RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 C6orf229H3BNL8 230 aa7.21□□□□□ -1.26
SCN1A-217ENST00000637988 ZBTB24O43167 697 aaPredicted RBP7.21□□□□□ -1.26
SCN1A-217ENST00000637988 LETM1O95202 739 aaPredicted RBP7.21□□□□□ -1.26
SCN1A-217ENST00000637988 CCT4P50991 539 aaKnown RBP7.21□□□□□ -1.26
SCN1A-217ENST00000637988 DDX46Q7L014 1031 aaKnown RBP7.21□□□□□ -1.26
SCN1A-217ENST00000637988 CCDC91Q7Z6B0 441 aa7.21□□□□□ -1.26
SCN1A-217ENST00000637988 ARID3AQ99856 593 aa7.21□□□□□ -1.26
SCN1A-217ENST00000637988 FAM13BQ9NYF5 915 aa7.21□□□□□ -1.26
SCN1A-217ENST00000637988 ZNF219Q9P2Y4 722 aaPredicted RBP7.21□□□□□ -1.26
SCN1A-217ENST00000637988 TAF12Q16514 161 aa7.21□□□□□ -1.26
SCN1A-217ENST00000637988 ZNF444Q8N0Y2 327 aaPredicted RBP7.21□□□□□ -1.26
SCN1A-217ENST00000637988 AIDAQ96BJ3 306 aa7.21□□□□□ -1.26
SCN1A-217ENST00000637988 CDK19Q9BWU1 502 aa7.21□□□□□ -1.26
SCN1A-217ENST00000637988 ABCF2Q9UG63 623 aa7.21□□□□□ -1.26
SCN1A-217ENST00000637988 NOM1Q5C9Z4 860 aaKnown RBP7.21□□□□□ -1.26
SCN1A-217ENST00000637988 TTC21AQ8NDW8 1320 aa7.21□□□□□ -1.26
SCN1A-217ENST00000637988 FGD5Q6ZNL6 1462 aa7.21□□□□□ -1.26
SCN1A-217ENST00000637988 CCDC117Q8IWD4 279 aaPredicted RBP7.21□□□□□ -1.26
SCN1A-217ENST00000637988 IFT140Q96RY7 1462 aa7.21□□□□□ -1.26
SCN1A-217ENST00000637988 BRPF1P55201 1214 aaPredicted RBP7.2□□□□□ -1.26
SCN1A-217ENST00000637988 NUCB2P80303 420 aa7.2□□□□□ -1.26
SCN1A-217ENST00000637988 CC2D2AQ9P2K1 1620 aa7.2□□□□□ -1.26
SCN1A-217ENST00000637988 METTL24Q5JXM2 366 aa7.2□□□□□ -1.26
SCN1A-217ENST00000637988 SPTY2D1Q68D10 685 aaPredicted RBP7.2□□□□□ -1.26
SCN1A-217ENST00000637988 JDP2Q8WYK2 163 aa7.2□□□□□ -1.26
SCN1A-217ENST00000637988 CNTLNQ9NXG0 1405 aa7.2□□□□□ -1.26
SCN1A-217ENST00000637988 LPXNO60711 386 aa7.2□□□□□ -1.26
SCN1A-217ENST00000637988 SLC5A1P13866 664 aa7.2□□□□□ -1.26
SCN1A-217ENST00000637988 IQCEQ6IPM2 695 aa7.2□□□□□ -1.26
SCN1A-217ENST00000637988 BAG3O95817 575 aa7.2□□□□□ -1.26
SCN1A-217ENST00000637988 HSP90AA2PQ14568 343 aaPredicted RBP7.2□□□□□ -1.26
SCN1A-217ENST00000637988 TTLL5Q6EMB2 1281 aa7.2□□□□□ -1.26
SCN1A-217ENST00000637988 TEX13AQ9BXU3 409 aaPredicted RBP7.2□□□□□ -1.26
SCN1A-217ENST00000637988 TRAF1Q13077 416 aa7.2□□□□□ -1.26
SCN1A-217ENST00000637988 CEP57L1Q8IYX8 460 aa7.2□□□□□ -1.26
SCN1A-217ENST00000637988 ZNF397Q8NF99 534 aaPredicted RBP7.2□□□□□ -1.26
SCN1A-217ENST00000637988 NOC2LQ9Y3T9 749 aaKnown RBP7.2□□□□□ -1.26
SCN1A-217ENST00000637988 ATAD2BQ9ULI0 1458 aa7.19□□□□□ -1.26
SCN1A-217ENST00000637988 MPRIPQ6WCQ1 1025 aa7.19□□□□□ -1.26
SCN1A-217ENST00000637988 BAG4O95429 457 aaKnown RBP7.19□□□□□ -1.26
SCN1A-217ENST00000637988 BMS1Q14692 1282 aaKnown RBP7.19□□□□□ -1.26
SCN1A-217ENST00000637988 RTN4Q9NQC3 1192 aaKnown RBP7.19□□□□□ -1.26
SCN1A-217ENST00000637988 SYNJ1O43426 1573 aa7.19□□□□□ -1.26
SCN1A-217ENST00000637988 TMEM266Q2M3C6 531 aa7.19□□□□□ -1.26
SCN1A-217ENST00000637988 CDC5LQ99459 802 aaKnown RBP7.19□□□□□ -1.26
SCN1A-217ENST00000637988 GSTO1P78417 241 aa7.19□□□□□ -1.26
SCN1A-217ENST00000637988 STK38Q15208 465 aa7.19□□□□□ -1.26
SCN1A-217ENST00000637988 CCDC82Q8N4S0 544 aa7.19□□□□□ -1.26
SCN1A-217ENST00000637988 MCM2P49736 904 aa7.19□□□□□ -1.26
SCN1A-217ENST00000637988 CETN1Q12798 172 aa7.19□□□□□ -1.26
SCN1A-217ENST00000637988 AMOTQ4VCS5 1084 aa7.19□□□□□ -1.26
SCN1A-217ENST00000637988 PPP1R42Q7Z4L9 355 aa7.19□□□□□ -1.26
SCN1A-217ENST00000637988 APBB1IPQ7Z5R6 666 aaPredicted RBP7.19□□□□□ -1.26
SCN1A-217ENST00000637988 PRC1O43663 620 aa7.19□□□□□ -1.26
SCN1A-217ENST00000637988 FGFR1OPO95684 399 aaKnown RBP7.19□□□□□ -1.26
SCN1A-217ENST00000637988 TSG101Q99816 390 aa7.19□□□□□ -1.26
SCN1A-217ENST00000637988 GGNBP2Q9H3C7 697 aa7.19□□□□□ -1.26
SCN1A-217ENST00000637988 STXBP4Q6ZWJ1 553 aa7.18□□□□□ -1.26
SCN1A-217ENST00000637988 CADPS2Q86UW7 1296 aa7.18□□□□□ -1.26
SCN1A-217ENST00000637988 PPFIBP1Q86W92 1011 aa7.18□□□□□ -1.26
SCN1A-217ENST00000637988 ZC3H6P61129 1189 aaKnown RBP7.18□□□□□ -1.26
SCN1A-217ENST00000637988 SIL1Q9H173 461 aa7.18□□□□□ -1.26
SCN1A-217ENST00000637988 NCOA2Q15596 1464 aa7.18□□□□□ -1.26
SCN1A-217ENST00000637988 GOLGA6L7A0A1B0GV03 622 aa7.18□□□□□ -1.26
SCN1A-217ENST00000637988 PARP3Q9Y6F1 533 aa7.18□□□□□ -1.26
SCN1A-217ENST00000637988 DAPK1P53355 1430 aa7.18□□□□□ -1.26
SCN1A-217ENST00000637988 VPS36Q86VN1 386 aa7.18□□□□□ -1.26
SCN1A-217ENST00000637988 KIF14Q15058 1648 aa7.18□□□□□ -1.26
SCN1A-217ENST00000637988 CCDC196A0A1B0GTZ2 297 aa7.18□□□□□ -1.26
SCN1A-217ENST00000637988 XPCQ01831 940 aaPredicted RBP7.18□□□□□ -1.26
SCN1A-217ENST00000637988 IMMTQ16891 758 aaKnown RBP7.18□□□□□ -1.26
SCN1A-217ENST00000637988 C8orf37Q96NL8 207 aa7.18□□□□□ -1.26
SCN1A-217ENST00000637988 CCDC12Q8WUD4 166 aaPredicted RBP7.18□□□□□ -1.26
SCN1A-217ENST00000637988 LDHCP07864 332 aa7.17□□□□□ -1.26
SCN1A-217ENST00000637988 ZGPATQ8N5A5 531 aaKnown RBP7.17□□□□□ -1.26
SCN1A-217ENST00000637988 PPM1EQ8WY54 764 aa7.17□□□□□ -1.26
SCN1A-217ENST00000637988 SRCIN1Q9C0H9 1055 aa7.17□□□□□ -1.26
SCN1A-217ENST00000637988 IDH1O75874 414 aaKnown RBP7.17□□□□□ -1.26
SCN1A-217ENST00000637988 SLU7O95391 586 aaKnown RBP7.17□□□□□ -1.26
SCN1A-217ENST00000637988 MAP3K12Q12852 859 aa7.17□□□□□ -1.26
SCN1A-217ENST00000637988 TMEM132EQ6IEE7 984 aa7.17□□□□□ -1.26
SCN1A-217ENST00000637988 GNAT3A8MTJ3 354 aa7.17□□□□□ -1.26
SCN1A-217ENST00000637988 IFIT5Q13325 482 aaKnown RBP7.17□□□□□ -1.26
SCN1A-217ENST00000637988 SKIDA1Q1XH10 827 aa7.17□□□□□ -1.26
SCN1A-217ENST00000637988 SAMM50Q9Y512 469 aa7.17□□□□□ -1.26
SCN1A-217ENST00000637988 APAF1O14727 1248 aa7.17□□□□□ -1.26
SCN1A-217ENST00000637988 KIF20AO95235 890 aa7.17□□□□□ -1.26
SCN1A-217ENST00000637988 BRDTQ58F21 947 aaPredicted RBP7.17□□□□□ -1.26
SCN1A-217ENST00000637988 IFT57Q9NWB7 429 aa7.17□□□□□ -1.26
SCN1A-217ENST00000637988 IQCA1Q86XH1 822 aa7.17□□□□□ -1.26
SCN1A-217ENST00000637988 SLC26A8Q96RN1 970 aa7.17□□□□□ -1.26
SCN1A-217ENST00000637988 ARHGEF6Q15052 776 aa7.17□□□□□ -1.26
SCN1A-217ENST00000637988 TRIM5Q9C035 493 aa7.17□□□□□ -1.26
SCN1A-217ENST00000637988 COG6Q9Y2V7 657 aa7.17□□□□□ -1.26
SCN1A-217ENST00000637988 CDC45O75419 566 aa7.16□□□□□ -1.26
SCN1A-217ENST00000637988 BIRC2Q13490 618 aa7.16□□□□□ -1.26
SCN1A-217ENST00000637988 KANK4Q5T7N3 995 aaPredicted RBP7.16□□□□□ -1.26
SCN1A-217ENST00000637988 ZNF354CQ86Y25 554 aa7.16□□□□□ -1.26
SCN1A-217ENST00000637988 TNNI2P48788 182 aa7.16□□□□□ -1.26
SCN1A-217ENST00000637988 CKAP2LQ8IYA6 745 aa7.16□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms