RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 FAM182BQ5T319 152 aa24.75■■□□□ 1.55
CLN3-259ENST00000637551 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP24.75■■□□□ 1.55
CLN3-259ENST00000637551 PARD3Q8TEW0 1356 aa24.74■■□□□ 1.55
CLN3-259ENST00000637551 KDRP35968 1356 aa24.73■■□□□ 1.55
CLN3-259ENST00000637551 EZH2Q15910 746 aaKnown RBP24.73■■□□□ 1.55
CLN3-259ENST00000637551 MTHFSP49914 203 aa24.72■■□□□ 1.55
CLN3-259ENST00000637551 MARCH10Q8NA82 808 aaPredicted RBP24.72■■□□□ 1.55
CLN3-259ENST00000637551 EYA1Q99502 592 aa24.72■■□□□ 1.55
CLN3-259ENST00000637551 NHSQ6T4R5 1651 aa24.72■■□□□ 1.55
CLN3-259ENST00000637551 TATP17735 454 aaPredicted RBP24.71■■□□□ 1.55
CLN3-259ENST00000637551 COL3A1P02461 1466 aaPredicted RBP24.7■■□□□ 1.55
CLN3-259ENST00000637551 CAMKK2Q96RR4 588 aa24.7■■□□□ 1.54
CLN3-259ENST00000637551 PCDH11XQ9BZA7 1347 aa24.69■■□□□ 1.54
CLN3-259ENST00000637551 PCDH11YQ9BZA8 1340 aa24.69■■□□□ 1.54
CLN3-259ENST00000637551 ZCRB1Q8TBF4 217 aaKnown RBP24.69■■□□□ 1.54
CLN3-259ENST00000637551 IL13P35225 146 aa24.67■■□□□ 1.54
CLN3-259ENST00000637551 BCL11BQ9C0K0 894 aaPredicted RBP24.66■■□□□ 1.54
CLN3-259ENST00000637551 RALBP1Q15311 655 aa24.65■■□□□ 1.54
CLN3-259ENST00000637551 CFAP53Q96M91 514 aa24.65■■□□□ 1.54
CLN3-259ENST00000637551 USHBP1Q8N6Y0 703 aa24.64■■□□□ 1.54
CLN3-259ENST00000637551 SPG7Q9UQ90 795 aa24.64■■□□□ 1.54
CLN3-259ENST00000637551 DIAPH1O60610 1272 aaKnown RBP24.63■■□□□ 1.53
CLN3-259ENST00000637551 TRIM37O94972 964 aa24.62■■□□□ 1.53
CLN3-259ENST00000637551 PPP2R1AP30153 589 aa24.62■■□□□ 1.53
CLN3-259ENST00000637551 RREB1Q92766 1687 aa24.62■■□□□ 1.53
CLN3-259ENST00000637551 PLSCR1O15162 318 aa24.61■■□□□ 1.53
CLN3-259ENST00000637551 DDX10Q13206 875 aaKnown RBP24.61■■□□□ 1.53
CLN3-259ENST00000637551 AMOTQ4VCS5 1084 aa24.61■■□□□ 1.53
CLN3-259ENST00000637551 DOT1LQ8TEK3 1739 aa24.6■■□□□ 1.53
CLN3-259ENST00000637551 ZNF316A6NFI3 1004 aaPredicted RBP24.59■■□□□ 1.53
CLN3-259ENST00000637551 NKX1-1Q15270 411 aaPredicted RBP24.59■■□□□ 1.53
CLN3-259ENST00000637551 APBA3O96018 575 aa24.58■■□□□ 1.53
CLN3-259ENST00000637551 KAT6BQ8WYB5 2073 aa24.57■■□□□ 1.52
CLN3-259ENST00000637551 BTAF1O14981 1849 aa24.57■■□□□ 1.52
CLN3-259ENST00000637551 DDX54Q8TDD1 881 aaKnown RBP24.56■■□□□ 1.52
CLN3-259ENST00000637551 NUDCQ9Y266 331 aa24.56■■□□□ 1.52
CLN3-259ENST00000637551 PLEKHO1Q53GL0 409 aaPredicted RBP24.55■■□□□ 1.52
CLN3-259ENST00000637551 CYP27B1O15528 508 aa24.54■■□□□ 1.52
CLN3-259ENST00000637551 HSP90AB1P08238 724 aaKnown RBP24.54■■□□□ 1.52
CLN3-259ENST00000637551 SULT6B1Q6IMI4 303 aa24.54■■□□□ 1.52
CLN3-259ENST00000637551 IFNL2Q8IZJ0 200 aa24.54■■□□□ 1.52
CLN3-259ENST00000637551 NUP188Q5SRE5 1749 aa24.53■■□□□ 1.52
CLN3-259ENST00000637551 HMGB2P26583 209 aaKnown RBP24.53■■□□□ 1.52
CLN3-259ENST00000637551 NBPF14Q5TI25 921 aa24.53■■□□□ 1.52
CLN3-259ENST00000637551 DCAF8L1A6NGE4 600 aa24.52■■□□□ 1.52
CLN3-259ENST00000637551 SPON1Q9HCB6 807 aa24.52■■□□□ 1.52
CLN3-259ENST00000637551 TOGARAM1Q9Y4F4 1720 aa24.51■■□□□ 1.51
CLN3-259ENST00000637551 MYBBP1AQ9BQG0 1328 aaKnown RBP24.51■■□□□ 1.51
CLN3-259ENST00000637551 ITGB4P16144 1822 aa24.5■■□□□ 1.51
CLN3-259ENST00000637551 PHKG2P15735 406 aa24.5■■□□□ 1.51
CLN3-259ENST00000637551 PPP1R1BQ9UD71 204 aaPredicted RBP24.5■■□□□ 1.51
CLN3-259ENST00000637551 KCNQ2O43526 872 aa24.49■■□□□ 1.51
CLN3-259ENST00000637551 AEBP1Q8IUX7 1158 aa24.49■■□□□ 1.51
CLN3-259ENST00000637551 LY75O60449 1722 aa24.48■■□□□ 1.51
CLN3-259ENST00000637551 ADAMTS7Q9UKP4 1686 aa24.47■■□□□ 1.51
CLN3-259ENST00000637551 DCAF5Q96JK2 942 aa24.47■■□□□ 1.51
CLN3-259ENST00000637551 PRKRIP1Q9H875 184 aaPredicted RBP24.46■■□□□ 1.51
CLN3-259ENST00000637551 SCN11AQ9UI33 1791 aa24.45■■□□□ 1.5
CLN3-259ENST00000637551 FCHSD2O94868 740 aa24.45■■□□□ 1.5
CLN3-259ENST00000637551 ERVV-2B6SEH9 535 aa24.44■■□□□ 1.5
CLN3-259ENST00000637551 CNGB1Q14028 1251 aaPredicted RBP24.44■■□□□ 1.5
CLN3-259ENST00000637551 C1orf141Q5JVX7 400 aa24.44■■□□□ 1.5
CLN3-259ENST00000637551 U2SURPO15042 1029 aaKnown RBP24.43■■□□□ 1.5
CLN3-259ENST00000637551 PRIM1P49642 420 aaKnown RBP24.43■■□□□ 1.5
CLN3-259ENST00000637551 ZNF530Q6P9A1 599 aaPredicted RBP24.43■■□□□ 1.5
CLN3-259ENST00000637551 ACSBG1Q96GR2 724 aa24.43■■□□□ 1.5
CLN3-259ENST00000637551 AKAP4Q5JQC9 854 aa24.42■■□□□ 1.5
CLN3-259ENST00000637551 SLC27A3Q5K4L6 730 aa24.42■■□□□ 1.5
CLN3-259ENST00000637551 ZNF831Q5JPB2 1677 aa24.41■■□□□ 1.5
CLN3-259ENST00000637551 MRC1P22897 1456 aa24.41■■□□□ 1.5
CLN3-259ENST00000637551 HMOX1P09601 288 aa24.41■■□□□ 1.5
CLN3-259ENST00000637551 GAS2L2Q8NHY3 880 aa24.41■■□□□ 1.5
CLN3-259ENST00000637551 RSPH6AQ9H0K4 717 aa24.41■■□□□ 1.5
CLN3-259ENST00000637551 PNNQ9H307 717 aaKnown RBP24.41■■□□□ 1.5
CLN3-259ENST00000637551 VIRMAQ69YN4 1812 aaKnown RBP24.4■■□□□ 1.5
CLN3-259ENST00000637551 PAPPAQ13219 1627 aa24.4■■□□□ 1.5
CLN3-259ENST00000637551 PTF1AQ7RTS3 328 aa24.4■■□□□ 1.5
CLN3-259ENST00000637551 SMARCC1Q92922 1105 aaPredicted RBP24.4■■□□□ 1.5
CLN3-259ENST00000637551 KDM6AO15550 1401 aaPredicted RBP24.39■■□□□ 1.5
CLN3-259ENST00000637551 ZNF784Q8NCA9 323 aaPredicted RBP24.39■■□□□ 1.49
CLN3-259ENST00000637551 UTRNP46939 3433 aa24.39■■□□□ 1.49
CLN3-259ENST00000637551 U2AF1L5P0DN76 240 aaPredicted RBP24.38■■□□□ 1.49
CLN3-259ENST00000637551 U2AF1Q01081 240 aaKnown RBP eCLIP24.38■■□□□ 1.49
CLN3-259ENST00000637551 TXNRD1Q16881 649 aa24.38■■□□□ 1.49
CLN3-259ENST00000637551 SYTL4Q96C24 671 aaPredicted RBP24.38■■□□□ 1.49
CLN3-259ENST00000637551 TMOD3Q9NYL9 352 aa24.37■■□□□ 1.49
CLN3-259ENST00000637551 QSER1Q2KHR3 1735 aa24.35■■□□□ 1.49
CLN3-259ENST00000637551 PROM2Q8N271 834 aa24.35■■□□□ 1.49
CLN3-259ENST00000637551 CICQ96RK0 1608 aaPredicted RBP24.35■■□□□ 1.49
CLN3-259ENST00000637551 MAP3K5Q99683 1374 aa24.34■■□□□ 1.49
CLN3-259ENST00000637551 PRKAR2BP31323 418 aa24.34■■□□□ 1.49
CLN3-259ENST00000637551 MTHFSDQ2M296 383 aaKnown RBP24.34■■□□□ 1.49
CLN3-259ENST00000637551 NEFMP07197 916 aa24.33■■□□□ 1.49
CLN3-259ENST00000637551 PALLDQ8WX93 1383 aa24.32■■□□□ 1.48
CLN3-259ENST00000637551 MPRIPQ6WCQ1 1025 aa24.32■■□□□ 1.48
CLN3-259ENST00000637551 PIGBQ92521 554 aa24.32■■□□□ 1.48
CLN3-259ENST00000637551 TAF1LQ8IZX4 1826 aa24.31■■□□□ 1.48
CLN3-259ENST00000637551 HTATSF1O43719 755 aaKnown RBP24.31■■□□□ 1.48
CLN3-259ENST00000637551 CASZ1Q86V15 1759 aa24.3■■□□□ 1.48
CLN3-259ENST00000637551 SENP3-EIF4A1A0A087X0R7 540 aa24.3■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms