RNA–Protein interactions for RNA: ENST00000637325.1

PNKP-228, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 100 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-228ENST00000637325 KIF7Q2M1P5 1343 aa18.92■□□□□ 0.62
PNKP-228ENST00000637325 BTAF1O14981 1849 aa18.91■□□□□ 0.62
PNKP-228ENST00000637325 TATP17735 454 aaPredicted RBP18.91■□□□□ 0.62
PNKP-228ENST00000637325 NSD2O96028 1365 aa18.91■□□□□ 0.62
PNKP-228ENST00000637325 MORC1Q86VD1 984 aa18.9■□□□□ 0.62
PNKP-228ENST00000637325 POLKQ9UBT6 870 aa18.9■□□□□ 0.62
PNKP-228ENST00000637325 SHANK3Q9BYB0 1731 aa18.9■□□□□ 0.62
PNKP-228ENST00000637325 WASHC2AQ641Q2 1341 aa18.9■□□□□ 0.62
PNKP-228ENST00000637325 MEGF6O75095 1541 aa18.9■□□□□ 0.62
PNKP-228ENST00000637325 SRCAPQ6ZRS2 3230 aa18.88■□□□□ 0.61
PNKP-228ENST00000637325 DOT1LQ8TEK3 1739 aa18.86■□□□□ 0.61
PNKP-228ENST00000637325 SYTL4Q96C24 671 aaPredicted RBP18.86■□□□□ 0.61
PNKP-228ENST00000637325 TXNRD1Q16881 649 aa18.85■□□□□ 0.61
PNKP-228ENST00000637325 LRP5O75197 1615 aa18.85■□□□□ 0.61
PNKP-228ENST00000637325 PROM2Q8N271 834 aa18.84■□□□□ 0.61
PNKP-228ENST00000637325 EYA1Q99502 592 aa18.83■□□□□ 0.6
PNKP-228ENST00000637325 PCDH11XQ9BZA7 1347 aa18.82■□□□□ 0.6
PNKP-228ENST00000637325 PCDH11YQ9BZA8 1340 aa18.82■□□□□ 0.6
PNKP-228ENST00000637325 PRIM1P49642 420 aaKnown RBP18.82■□□□□ 0.6
PNKP-228ENST00000637325 EIF4A2Q14240 407 aaKnown RBP18.82■□□□□ 0.6
PNKP-228ENST00000637325 AMER1Q5JTC6 1135 aaPredicted RBP18.81■□□□□ 0.6
PNKP-228ENST00000637325 STK32BQ9NY57 414 aa18.81■□□□□ 0.6
PNKP-228ENST00000637325 PKD1L3Q7Z443 1732 aa18.8■□□□□ 0.6
PNKP-228ENST00000637325 SPG7Q9UQ90 795 aa18.8■□□□□ 0.6
PNKP-228ENST00000637325 ANO8Q9HCE9 1232 aaPredicted RBP18.79■□□□□ 0.6
PNKP-228ENST00000637325 ITGB4P16144 1822 aa18.79■□□□□ 0.6
PNKP-228ENST00000637325 NCAPD2Q15021 1401 aa18.78■□□□□ 0.6
PNKP-228ENST00000637325 CC2D1BQ5T0F9 858 aaKnown RBP18.77■□□□□ 0.6
PNKP-228ENST00000637325 CYP27B1O15528 508 aa18.76■□□□□ 0.59
PNKP-228ENST00000637325 PER1O15534 1290 aaPredicted RBP18.76■□□□□ 0.59
PNKP-228ENST00000637325 CNGB1Q14028 1251 aaPredicted RBP18.76■□□□□ 0.59
PNKP-228ENST00000637325 LY75O60449 1722 aa18.75■□□□□ 0.59
PNKP-228ENST00000637325 SLC15A2Q16348 729 aa18.75■□□□□ 0.59
PNKP-228ENST00000637325 SLC27A3Q5K4L6 730 aa18.75■□□□□ 0.59
PNKP-228ENST00000637325 SPON1Q9HCB6 807 aa18.74■□□□□ 0.59
PNKP-228ENST00000637325 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.74■□□□□ 0.59
PNKP-228ENST00000637325 IGSF1Q8N6C5 1336 aa18.74■□□□□ 0.59
PNKP-228ENST00000637325 MPRIPQ6WCQ1 1025 aa18.73■□□□□ 0.59
PNKP-228ENST00000637325 CASZ1Q86V15 1759 aa18.73■□□□□ 0.59
PNKP-228ENST00000637325 MTHFSP49914 203 aa18.72■□□□□ 0.59
PNKP-228ENST00000637325 IFNL2Q8IZJ0 200 aa18.72■□□□□ 0.59
PNKP-228ENST00000637325 LRRC4BQ9NT99 713 aa18.72■□□□□ 0.59
PNKP-228ENST00000637325 TOGARAM1Q9Y4F4 1720 aa18.71■□□□□ 0.59
PNKP-228ENST00000637325 PLEKHO1Q53GL0 409 aaPredicted RBP18.71■□□□□ 0.59
PNKP-228ENST00000637325 PPP1R1BQ9UD71 204 aaPredicted RBP18.71■□□□□ 0.59
PNKP-228ENST00000637325 PAPPAQ13219 1627 aa18.71■□□□□ 0.58
PNKP-228ENST00000637325 NKX1-1Q15270 411 aaPredicted RBP18.7■□□□□ 0.58
PNKP-228ENST00000637325 CCNL1Q9UK58 526 aaPredicted RBP18.7■□□□□ 0.58
PNKP-228ENST00000637325 NPC1L1Q9UHC9 1359 aa18.69■□□□□ 0.58
PNKP-228ENST00000637325 PHKG2P15735 406 aa18.69■□□□□ 0.58
PNKP-228ENST00000637325 IL13P35225 146 aa18.69■□□□□ 0.58
PNKP-228ENST00000637325 KCNQ4P56696 695 aa18.69■□□□□ 0.58
PNKP-228ENST00000637325 SULT6B1Q6IMI4 303 aa18.69■□□□□ 0.58
PNKP-228ENST00000637325 PDGFDQ9GZP0 370 aaPredicted RBP18.69■□□□□ 0.58
PNKP-228ENST00000637325 ZBTB7AO95365 584 aa18.68■□□□□ 0.58
PNKP-228ENST00000637325 AMOTQ4VCS5 1084 aa18.68■□□□□ 0.58
PNKP-228ENST00000637325 PLEKHG2Q9H7P9 1386 aa18.68■□□□□ 0.58
PNKP-228ENST00000637325 QSER1Q2KHR3 1735 aa18.67■□□□□ 0.58
PNKP-228ENST00000637325 ZNF827Q17R98 1081 aa18.67■□□□□ 0.58
PNKP-228ENST00000637325 AEBP1Q8IUX7 1158 aa18.67■□□□□ 0.58
PNKP-228ENST00000637325 SMARCC1Q92922 1105 aaPredicted RBP18.67■□□□□ 0.58
PNKP-228ENST00000637325 TMOD3Q9NYL9 352 aa18.67■□□□□ 0.58
PNKP-228ENST00000637325 TAF1LQ8IZX4 1826 aa18.66■□□□□ 0.58
PNKP-228ENST00000637325 TUBGCP6Q96RT7 1819 aa18.66■□□□□ 0.58
PNKP-228ENST00000637325 HSP90AB1P08238 724 aaKnown RBP18.66■□□□□ 0.58
PNKP-228ENST00000637325 HMGB2P26583 209 aaKnown RBP18.66■□□□□ 0.58
PNKP-228ENST00000637325 ZNF530Q6P9A1 599 aaPredicted RBP18.66■□□□□ 0.58
PNKP-228ENST00000637325 PIGBQ92521 554 aa18.66■□□□□ 0.58
PNKP-228ENST00000637325 ATF5Q9Y2D1 282 aaPredicted RBP18.66■□□□□ 0.58
PNKP-228ENST00000637325 PALLDQ8WX93 1383 aa18.66■□□□□ 0.58
PNKP-228ENST00000637325 DIAPH1O60610 1272 aaKnown RBP18.65■□□□□ 0.58
PNKP-228ENST00000637325 AKT1S1Q96B36 256 aa18.65■□□□□ 0.58
PNKP-228ENST00000637325 TFCP2L1Q9NZI6 479 aa18.65■□□□□ 0.58
PNKP-228ENST00000637325 C5P01031 1676 aa18.64■□□□□ 0.57
PNKP-228ENST00000637325 C1orf141Q5JVX7 400 aa18.64■□□□□ 0.57
PNKP-228ENST00000637325 MTFR1LQ9H019 292 aa18.63■□□□□ 0.57
PNKP-228ENST00000637325 VIRMAQ69YN4 1812 aaKnown RBP18.63■□□□□ 0.57
PNKP-228ENST00000637325 KDRP35968 1356 aa18.61■□□□□ 0.57
PNKP-228ENST00000637325 HMOX1P09601 288 aa18.61■□□□□ 0.57
PNKP-228ENST00000637325 DCAF5Q96JK2 942 aa18.61■□□□□ 0.57
PNKP-228ENST00000637325 ERVV-2B6SEH9 535 aa18.6■□□□□ 0.57
PNKP-228ENST00000637325 MSH5O43196 834 aa18.59■□□□□ 0.57
PNKP-228ENST00000637325 CFAP53Q96M91 514 aa18.59■□□□□ 0.57
PNKP-228ENST00000637325 ASAP1Q9ULH1 1129 aa18.59■□□□□ 0.57
PNKP-228ENST00000637325 SCN11AQ9UI33 1791 aa18.59■□□□□ 0.57
PNKP-228ENST00000637325 PNPLA7Q6ZV29 1317 aa18.58■□□□□ 0.57
PNKP-228ENST00000637325 U2SURPO15042 1029 aaKnown RBP18.58■□□□□ 0.56
PNKP-228ENST00000637325 PTGER2P43116 358 aa18.58■□□□□ 0.56
PNKP-228ENST00000637325 CABP4P57796 275 aa18.58■□□□□ 0.56
PNKP-228ENST00000637325 SLC16A10Q8TF71 515 aa18.58■□□□□ 0.56
PNKP-228ENST00000637325 LOC102724428A0A0B4J2F2 783 aa18.57■□□□□ 0.56
PNKP-228ENST00000637325 SIK1P57059 783 aa18.57■□□□□ 0.56
PNKP-228ENST00000637325 ATG3Q9NT62 314 aa18.57■□□□□ 0.56
PNKP-228ENST00000637325 AKAP4Q5JQC9 854 aa18.56■□□□□ 0.56
PNKP-228ENST00000637325 AK7Q96M32 723 aa18.56■□□□□ 0.56
PNKP-228ENST00000637325 C4BP0C0L5 1744 aa18.56■□□□□ 0.56
PNKP-228ENST00000637325 KDM6AO15550 1401 aaPredicted RBP18.56■□□□□ 0.56
PNKP-228ENST00000637325 DCAF8L1A6NGE4 600 aa18.55■□□□□ 0.56
PNKP-228ENST00000637325 ATP6V1AP38606 617 aa18.55■□□□□ 0.56
PNKP-228ENST00000637325 COL3A1P02461 1466 aaPredicted RBP18.54■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms