RNA–Protein interactions for RNA: ENST00000636172.1

CLN3-245, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,536 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-245ENST00000636172 VPS72Q15906 364 aa27.14■■□□□ 1.94
CLN3-245ENST00000636172 MTHFSDQ2M296 383 aaKnown RBP27.14■■□□□ 1.94
CLN3-245ENST00000636172 PLEKHG2Q9H7P9 1386 aa27.13■■□□□ 1.93
CLN3-245ENST00000636172 OVOS2A0A0G2JMS6 1433 aa27.13■■□□□ 1.93
CLN3-245ENST00000636172 TATP17735 454 aaPredicted RBP27.13■■□□□ 1.93
CLN3-245ENST00000636172 NEUROD2Q15784 382 aa27.13■■□□□ 1.93
CLN3-245ENST00000636172 PKD1L3Q7Z443 1732 aa27.13■■□□□ 1.93
CLN3-245ENST00000636172 ZBED9Q6R2W3 1325 aa27.13■■□□□ 1.93
CLN3-245ENST00000636172 DISP2A7MBM2 1401 aa27.12■■□□□ 1.93
CLN3-245ENST00000636172 IL2RBP14784 551 aa27.11■■□□□ 1.93
CLN3-245ENST00000636172 NGEFQ8N5V2 710 aa27.11■■□□□ 1.93
CLN3-245ENST00000636172 CCDC9Q9Y3X0 531 aaKnown RBP27.11■■□□□ 1.93
CLN3-245ENST00000636172 RIPK4P57078 832 aa27.1■■□□□ 1.93
CLN3-245ENST00000636172 NCBP3Q53F19 620 aaKnown RBP27.1■■□□□ 1.93
CLN3-245ENST00000636172 PLEKHO1Q53GL0 409 aaPredicted RBP27.1■■□□□ 1.93
CLN3-245ENST00000636172 GAS2L2Q8NHY3 880 aa27.1■■□□□ 1.93
CLN3-245ENST00000636172 AMOTQ4VCS5 1084 aa27.09■■□□□ 1.93
CLN3-245ENST00000636172 THRAP3Q9Y2W1 955 aaKnown RBP27.09■■□□□ 1.93
CLN3-245ENST00000636172 ATRNO75882 1429 aa27.09■■□□□ 1.93
CLN3-245ENST00000636172 CCDC27Q2M243 656 aa27.07■■□□□ 1.92
CLN3-245ENST00000636172 POTEAQ6S8J7 498 aa27.07■■□□□ 1.92
CLN3-245ENST00000636172 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP27.07■■□□□ 1.92
CLN3-245ENST00000636172 TRIM35Q9UPQ4 493 aa27.07■■□□□ 1.92
CLN3-245ENST00000636172 ZNF521Q96K83 1311 aa27.06■■□□□ 1.92
CLN3-245ENST00000636172 SHANK3Q9BYB0 1731 aa27.06■■□□□ 1.92
CLN3-245ENST00000636172 GLI3P10071 1580 aa27.05■■□□□ 1.92
CLN3-245ENST00000636172 ZNF530Q6P9A1 599 aaPredicted RBP27.05■■□□□ 1.92
CLN3-245ENST00000636172 BARGINQ6ZT62 677 aa27.05■■□□□ 1.92
CLN3-245ENST00000636172 WWC1Q8IX03 1113 aa27.05■■□□□ 1.92
CLN3-245ENST00000636172 TRPC5Q9UL62 973 aaPredicted RBP27.05■■□□□ 1.92
CLN3-245ENST00000636172 SPG7Q9UQ90 795 aa27.05■■□□□ 1.92
CLN3-245ENST00000636172 MAP3K5Q99683 1374 aa27.03■■□□□ 1.92
CLN3-245ENST00000636172 ZCRB1Q8TBF4 217 aaKnown RBP27.02■■□□□ 1.92
CLN3-245ENST00000636172 CDCA7Q9BWT1 371 aaPredicted RBP27.02■■□□□ 1.92
CLN3-245ENST00000636172 LMOD3Q0VAK6 560 aa27.01■■□□□ 1.91
CLN3-245ENST00000636172 LRRC37A3O60309 1634 aa27.01■■□□□ 1.91
CLN3-245ENST00000636172 GJD4Q96KN9 370 aaPredicted RBP27■■□□□ 1.91
CLN3-245ENST00000636172 GNAT3A8MTJ3 354 aa27■■□□□ 1.91
CLN3-245ENST00000636172 FAM98CQ17RN3 349 aaKnown RBP27■■□□□ 1.91
CLN3-245ENST00000636172 AKAP4Q5JQC9 854 aa27■■□□□ 1.91
CLN3-245ENST00000636172 QTRT2Q9H974 415 aaKnown RBP27■■□□□ 1.91
CLN3-245ENST00000636172 CYP27B1O15528 508 aa26.99■■□□□ 1.91
CLN3-245ENST00000636172 C1orf141Q5JVX7 400 aa26.99■■□□□ 1.91
CLN3-245ENST00000636172 THSD7AQ9UPZ6 1657 aa26.98■■□□□ 1.91
CLN3-245ENST00000636172 PCDH11XQ9BZA7 1347 aa26.98■■□□□ 1.91
CLN3-245ENST00000636172 PCDH11YQ9BZA8 1340 aa26.98■■□□□ 1.91
CLN3-245ENST00000636172 TNS2Q63HR2 1409 aa26.98■■□□□ 1.91
CLN3-245ENST00000636172 HTATSF1O43719 755 aaKnown RBP26.98■■□□□ 1.91
CLN3-245ENST00000636172 ZNF772Q68DY9 489 aaPredicted RBP26.98■■□□□ 1.91
CLN3-245ENST00000636172 VIRMAQ69YN4 1812 aaKnown RBP26.97■■□□□ 1.91
CLN3-245ENST00000636172 PHKG2P15735 406 aa26.97■■□□□ 1.91
CLN3-245ENST00000636172 DCTN1Q14203 1278 aa26.97■■□□□ 1.91
CLN3-245ENST00000636172 THUMPD2Q9BTF0 503 aaKnown RBP26.97■■□□□ 1.91
CLN3-245ENST00000636172 MCM10Q7L590 875 aa26.96■■□□□ 1.91
CLN3-245ENST00000636172 RTF1Q92541 710 aaKnown RBP26.96■■□□□ 1.91
CLN3-245ENST00000636172 ADAMTS7Q9UKP4 1686 aa26.96■■□□□ 1.91
CLN3-245ENST00000636172 WDR63Q8IWG1 891 aa26.95■■□□□ 1.91
CLN3-245ENST00000636172 IFNL2Q8IZJ0 200 aa26.95■■□□□ 1.91
CLN3-245ENST00000636172 EXOC5O00471 708 aa26.94■■□□□ 1.9
CLN3-245ENST00000636172 GOLGA2Q08379 1002 aa26.94■■□□□ 1.9
CLN3-245ENST00000636172 IL17REQ8NFR9 667 aa26.94■■□□□ 1.9
CLN3-245ENST00000636172 PDE3BQ13370 1112 aa26.93■■□□□ 1.9
CLN3-245ENST00000636172 CDCA7LQ96GN5 454 aa26.93■■□□□ 1.9
CLN3-245ENST00000636172 SCN11AQ9UI33 1791 aa26.92■■□□□ 1.9
CLN3-245ENST00000636172 DDB1Q16531 1140 aa26.92■■□□□ 1.9
CLN3-245ENST00000636172 MPRIPQ6WCQ1 1025 aa26.92■■□□□ 1.9
CLN3-245ENST00000636172 DDX54Q8TDD1 881 aaKnown RBP26.92■■□□□ 1.9
CLN3-245ENST00000636172 CEMIPQ8WUJ3 1361 aa26.92■■□□□ 1.9
CLN3-245ENST00000636172 KDM6AO15550 1401 aaPredicted RBP26.92■■□□□ 1.9
CLN3-245ENST00000636172 LGR6Q9HBX8 967 aa26.91■■□□□ 1.9
CLN3-245ENST00000636172 SPINK5Q9NQ38 1064 aaPredicted RBP26.91■■□□□ 1.9
CLN3-245ENST00000636172 ONECUT3O60422 494 aaPredicted RBP26.9■■□□□ 1.9
CLN3-245ENST00000636172 IL16Q14005 1332 aa26.9■■□□□ 1.9
CLN3-245ENST00000636172 RNMTO43148 476 aaKnown RBP26.89■■□□□ 1.89
CLN3-245ENST00000636172 HSP90AB1P08238 724 aaKnown RBP26.89■■□□□ 1.89
CLN3-245ENST00000636172 CALD1Q05682 793 aaKnown RBP26.89■■□□□ 1.89
CLN3-245ENST00000636172 SLFN5Q08AF3 891 aa26.88■■□□□ 1.89
CLN3-245ENST00000636172 NKX1-1Q15270 411 aaPredicted RBP26.88■■□□□ 1.89
CLN3-245ENST00000636172 DCAF5Q96JK2 942 aa26.88■■□□□ 1.89
CLN3-245ENST00000636172 A0A0G2JS52 829 aa26.87■■□□□ 1.89
CLN3-245ENST00000636172 MYT1Q01538 1121 aa26.87■■□□□ 1.89
CLN3-245ENST00000636172 E9PSI1 815 aa26.86■■□□□ 1.89
CLN3-245ENST00000636172 TOGARAM1Q9Y4F4 1720 aa26.86■■□□□ 1.89
CLN3-245ENST00000636172 RBM6P78332 1123 aaKnown RBP26.85■■□□□ 1.89
CLN3-245ENST00000636172 SIPA1L3O60292 1781 aaPredicted RBP26.85■■□□□ 1.89
CLN3-245ENST00000636172 TRMT2AQ8IZ69 625 aaKnown RBP26.85■■□□□ 1.89
CLN3-245ENST00000636172 MRC1P22897 1456 aa26.84■■□□□ 1.89
CLN3-245ENST00000636172 ZNF853P0CG23 659 aa26.84■■□□□ 1.89
CLN3-245ENST00000636172 SEPT12Q8IYM1 358 aa26.84■■□□□ 1.89
CLN3-245ENST00000636172 MARCH10Q8NA82 808 aaPredicted RBP26.84■■□□□ 1.89
CLN3-245ENST00000636172 IFT57Q9NWB7 429 aa26.84■■□□□ 1.89
CLN3-245ENST00000636172 DUSP27Q5VZP5 1158 aa26.82■■□□□ 1.88
CLN3-245ENST00000636172 CFAP44Q96MT7 982 aa26.82■■□□□ 1.88
CLN3-245ENST00000636172 LAS1LQ9Y4W2 734 aaKnown RBP26.82■■□□□ 1.88
CLN3-245ENST00000636172 GNAI1P63096 354 aa26.81■■□□□ 1.88
CLN3-245ENST00000636172 TEFQ10587 303 aa26.8■■□□□ 1.88
CLN3-245ENST00000636172 TSR2Q969E8 191 aaKnown RBP26.8■■□□□ 1.88
CLN3-245ENST00000636172 MYH16Q9H6N6 1097 aa26.8■■□□□ 1.88
CLN3-245ENST00000636172 FANCIQ9NVI1 1328 aa26.8■■□□□ 1.88
CLN3-245ENST00000636172 BRWD3Q6RI45 1802 aa26.79■■□□□ 1.88
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms