RNA–Protein interactions for RNA: ENST00000634712.2

LINC00339-207, long intergenic non-protein coding RNA 339, humanhuman

TSL 5

Gene LINC00339, Length 1,388 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-207ENST00000634712 PLSCR1O15162 318 aa21.33■■□□□ 1
LINC00339-207ENST00000634712 EIF4A2Q14240 407 aaKnown RBP21.33■■□□□ 1
LINC00339-207ENST00000634712 PTF1AQ7RTS3 328 aa21.33■■□□□ 1
LINC00339-207ENST00000634712 EYA1Q99502 592 aa21.33■■□□□ 1
LINC00339-207ENST00000634712 KCNQ2O43526 872 aa21.32■■□□□ 1
LINC00339-207ENST00000634712 NBPF14Q5TI25 921 aa21.31■■□□□ 1
LINC00339-207ENST00000634712 SYTL4Q96C24 671 aaPredicted RBP21.29■■□□□ 1
LINC00339-207ENST00000634712 PSDA5PKW4 1024 aaPredicted RBP21.28■■□□□ 1
LINC00339-207ENST00000634712 PCDH11XQ9BZA7 1347 aa21.28■■□□□ 1
LINC00339-207ENST00000634712 PCDH11YQ9BZA8 1340 aa21.28■■□□□ 1
LINC00339-207ENST00000634712 SPG7Q9UQ90 795 aa21.28■■□□□ 1
LINC00339-207ENST00000634712 NPC1L1Q9UHC9 1359 aa21.26■□□□□ 0.99
LINC00339-207ENST00000634712 MTHFSP49914 203 aa21.26■□□□□ 0.99
LINC00339-207ENST00000634712 R3HDM1Q15032 1099 aaKnown RBP21.26■□□□□ 0.99
LINC00339-207ENST00000634712 PRIM1P49642 420 aaKnown RBP21.25■□□□□ 0.99
LINC00339-207ENST00000634712 NHSQ6T4R5 1651 aa21.24■□□□□ 0.99
LINC00339-207ENST00000634712 TXNRD1Q16881 649 aa21.23■□□□□ 0.99
LINC00339-207ENST00000634712 NCAPD2Q15021 1401 aa21.23■□□□□ 0.99
LINC00339-207ENST00000634712 IGSF1Q8N6C5 1336 aa21.23■□□□□ 0.99
LINC00339-207ENST00000634712 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.23■□□□□ 0.99
LINC00339-207ENST00000634712 ZEB1P37275 1124 aaPredicted RBP21.22■□□□□ 0.99
LINC00339-207ENST00000634712 RREB1Q92766 1687 aa21.21■□□□□ 0.99
LINC00339-207ENST00000634712 CYP27B1O15528 508 aa21.21■□□□□ 0.99
LINC00339-207ENST00000634712 PROM2Q8N271 834 aa21.21■□□□□ 0.99
LINC00339-207ENST00000634712 RGPD3A6NKT7 1758 aaPredicted RBP21.2■□□□□ 0.98
LINC00339-207ENST00000634712 RGPD4Q7Z3J3 1758 aa21.2■□□□□ 0.98
LINC00339-207ENST00000634712 SHANK3Q9BYB0 1731 aa21.2■□□□□ 0.98
LINC00339-207ENST00000634712 IL13P35225 146 aa21.2■□□□□ 0.98
LINC00339-207ENST00000634712 PLEKHO1Q53GL0 409 aaPredicted RBP21.19■□□□□ 0.98
LINC00339-207ENST00000634712 SULT6B1Q6IMI4 303 aa21.19■□□□□ 0.98
LINC00339-207ENST00000634712 IFNL2Q8IZJ0 200 aa21.19■□□□□ 0.98
LINC00339-207ENST00000634712 DIAPH1O60610 1272 aaKnown RBP21.18■□□□□ 0.98
LINC00339-207ENST00000634712 NUP188Q5SRE5 1749 aa21.18■□□□□ 0.98
LINC00339-207ENST00000634712 BTAF1O14981 1849 aa21.17■□□□□ 0.98
LINC00339-207ENST00000634712 AMOTQ4VCS5 1084 aa21.16■□□□□ 0.98
LINC00339-207ENST00000634712 MPRIPQ6WCQ1 1025 aa21.16■□□□□ 0.98
LINC00339-207ENST00000634712 STK32BQ9NY57 414 aa21.16■□□□□ 0.98
LINC00339-207ENST00000634712 DOT1LQ8TEK3 1739 aa21.16■□□□□ 0.98
LINC00339-207ENST00000634712 PLEKHG2Q9H7P9 1386 aa21.15■□□□□ 0.98
LINC00339-207ENST00000634712 NKX1-1Q15270 411 aaPredicted RBP21.15■□□□□ 0.98
LINC00339-207ENST00000634712 AEBP1Q8IUX7 1158 aa21.15■□□□□ 0.98
LINC00339-207ENST00000634712 PKD1L3Q7Z443 1732 aa21.15■□□□□ 0.98
LINC00339-207ENST00000634712 PHKG2P15735 406 aa21.14■□□□□ 0.98
LINC00339-207ENST00000634712 CFAP53Q96M91 514 aa21.14■□□□□ 0.98
LINC00339-207ENST00000634712 SLC27A3Q5K4L6 730 aa21.13■□□□□ 0.97
LINC00339-207ENST00000634712 HSP90AB1P08238 724 aaKnown RBP21.12■□□□□ 0.97
LINC00339-207ENST00000634712 ZNF530Q6P9A1 599 aaPredicted RBP21.12■□□□□ 0.97
LINC00339-207ENST00000634712 ANO8Q9HCE9 1232 aaPredicted RBP21.12■□□□□ 0.97
LINC00339-207ENST00000634712 HMOX1P09601 288 aa21.11■□□□□ 0.97
LINC00339-207ENST00000634712 C1orf141Q5JVX7 400 aa21.11■□□□□ 0.97
LINC00339-207ENST00000634712 U2SURPO15042 1029 aaKnown RBP21.1■□□□□ 0.97
LINC00339-207ENST00000634712 SLC15A2Q16348 729 aa21.1■□□□□ 0.97
LINC00339-207ENST00000634712 PPP2R1AP30153 589 aa21.1■□□□□ 0.97
LINC00339-207ENST00000634712 TMOD3Q9NYL9 352 aa21.1■□□□□ 0.97
LINC00339-207ENST00000634712 KDRP35968 1356 aa21.09■□□□□ 0.97
LINC00339-207ENST00000634712 SRCAPQ6ZRS2 3230 aa21.09■□□□□ 0.97
LINC00339-207ENST00000634712 DDX10Q13206 875 aaKnown RBP21.09■□□□□ 0.97
LINC00339-207ENST00000634712 SMARCC1Q92922 1105 aaPredicted RBP21.09■□□□□ 0.97
LINC00339-207ENST00000634712 LRRC4BQ9NT99 713 aa21.09■□□□□ 0.97
LINC00339-207ENST00000634712 CCNL1Q9UK58 526 aaPredicted RBP21.09■□□□□ 0.97
LINC00339-207ENST00000634712 HMGB2P26583 209 aaKnown RBP21.08■□□□□ 0.96
LINC00339-207ENST00000634712 PIGBQ92521 554 aa21.08■□□□□ 0.96
LINC00339-207ENST00000634712 DCAF5Q96JK2 942 aa21.08■□□□□ 0.96
LINC00339-207ENST00000634712 NUDCQ9Y266 331 aa21.08■□□□□ 0.96
LINC00339-207ENST00000634712 ERVV-2B6SEH9 535 aa21.06■□□□□ 0.96
LINC00339-207ENST00000634712 KCNQ4P56696 695 aa21.06■□□□□ 0.96
LINC00339-207ENST00000634712 PALLDQ8WX93 1383 aa21.04■□□□□ 0.96
LINC00339-207ENST00000634712 CABP4P57796 275 aa21.04■□□□□ 0.96
LINC00339-207ENST00000634712 SPON1Q9HCB6 807 aa21.04■□□□□ 0.96
LINC00339-207ENST00000634712 ITGB4P16144 1822 aa21.03■□□□□ 0.96
LINC00339-207ENST00000634712 AKAP4Q5JQC9 854 aa21.03■□□□□ 0.96
LINC00339-207ENST00000634712 TOGARAM1Q9Y4F4 1720 aa21.03■□□□□ 0.96
LINC00339-207ENST00000634712 COL3A1P02461 1466 aaPredicted RBP21.02■□□□□ 0.96
LINC00339-207ENST00000634712 TFCP2L1Q9NZI6 479 aa21.02■□□□□ 0.96
LINC00339-207ENST00000634712 ZNF827Q17R98 1081 aa21.01■□□□□ 0.95
LINC00339-207ENST00000634712 LY75O60449 1722 aa21.01■□□□□ 0.95
LINC00339-207ENST00000634712 AKT1S1Q96B36 256 aa21■□□□□ 0.95
LINC00339-207ENST00000634712 ASAP1Q9ULH1 1129 aa21■□□□□ 0.95
LINC00339-207ENST00000634712 LRP5O75197 1615 aa21■□□□□ 0.95
LINC00339-207ENST00000634712 U2AF1L5P0DN76 240 aaPredicted RBP20.99■□□□□ 0.95
LINC00339-207ENST00000634712 U2AF1Q01081 240 aaKnown RBP eCLIP20.99■□□□□ 0.95
LINC00339-207ENST00000634712 RALBP1Q15311 655 aa20.99■□□□□ 0.95
LINC00339-207ENST00000634712 MTHFSDQ2M296 383 aaKnown RBP20.99■□□□□ 0.95
LINC00339-207ENST00000634712 PDGFDQ9GZP0 370 aaPredicted RBP20.99■□□□□ 0.95
LINC00339-207ENST00000634712 ZBTB7AO95365 584 aa20.98■□□□□ 0.95
LINC00339-207ENST00000634712 PPP1R1BQ9UD71 204 aaPredicted RBP20.98■□□□□ 0.95
LINC00339-207ENST00000634712 PAPPAQ13219 1627 aa20.98■□□□□ 0.95
LINC00339-207ENST00000634712 LOC102724428A0A0B4J2F2 783 aa20.97■□□□□ 0.95
LINC00339-207ENST00000634712 SIK1P57059 783 aa20.97■□□□□ 0.95
LINC00339-207ENST00000634712 ATG3Q9NT62 314 aa20.97■□□□□ 0.95
LINC00339-207ENST00000634712 KDM6AO15550 1401 aaPredicted RBP20.97■□□□□ 0.95
LINC00339-207ENST00000634712 NFATC2IPQ8NCF5 419 aa20.97■□□□□ 0.95
LINC00339-207ENST00000634712 GAS2L2Q8NHY3 880 aa20.97■□□□□ 0.95
LINC00339-207ENST00000634712 ATF5Q9Y2D1 282 aaPredicted RBP20.97■□□□□ 0.95
LINC00339-207ENST00000634712 ATP6V1AP38606 617 aa20.96■□□□□ 0.95
LINC00339-207ENST00000634712 RBM42Q9BTD8 480 aaKnown RBP20.96■□□□□ 0.95
LINC00339-207ENST00000634712 MSH5O43196 834 aa20.95■□□□□ 0.94
LINC00339-207ENST00000634712 PRKAR2BP31323 418 aa20.95■□□□□ 0.94
LINC00339-207ENST00000634712 MTFR1LQ9H019 292 aa20.95■□□□□ 0.94
LINC00339-207ENST00000634712 RNMTO43148 476 aaKnown RBP20.94■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms