RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 UPF1Q92900 1129 aaKnown RBP eCLIP27.33■■□□□ 1.97
PTCD3-220ENST00000627371 PLEKHG2Q9H7P9 1386 aa27.33■■□□□ 1.97
PTCD3-220ENST00000627371 KDRP35968 1356 aa27.32■■□□□ 1.96
PTCD3-220ENST00000627371 ZCRB1Q8TBF4 217 aaKnown RBP27.31■■□□□ 1.96
PTCD3-220ENST00000627371 BCL9O00512 1426 aa27.31■■□□□ 1.96
PTCD3-220ENST00000627371 TNS1Q9HBL0 1735 aaKnown RBP27.3■■□□□ 1.96
PTCD3-220ENST00000627371 PRKRIP1Q9H875 184 aaPredicted RBP27.3■■□□□ 1.96
PTCD3-220ENST00000627371 MYBBP1AQ9BQG0 1328 aaKnown RBP27.3■■□□□ 1.96
PTCD3-220ENST00000627371 SULT6B1Q6IMI4 303 aa27.28■■□□□ 1.96
PTCD3-220ENST00000627371 AEBP1Q8IUX7 1158 aa27.28■■□□□ 1.96
PTCD3-220ENST00000627371 KAT6BQ8WYB5 2073 aa27.26■■□□□ 1.95
PTCD3-220ENST00000627371 PCDH11XQ9BZA7 1347 aa27.25■■□□□ 1.95
PTCD3-220ENST00000627371 PCDH11YQ9BZA8 1340 aa27.25■■□□□ 1.95
PTCD3-220ENST00000627371 NHSQ6T4R5 1651 aa27.25■■□□□ 1.95
PTCD3-220ENST00000627371 CCDC125Q86Z20 511 aa27.25■■□□□ 1.95
PTCD3-220ENST00000627371 DDX54Q8TDD1 881 aaKnown RBP27.25■■□□□ 1.95
PTCD3-220ENST00000627371 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP27.24■■□□□ 1.951e-12■■□□□ 13.1
PTCD3-220ENST00000627371 DOT1LQ8TEK3 1739 aa27.24■■□□□ 1.95
PTCD3-220ENST00000627371 U2SURPO15042 1029 aaKnown RBP27.23■■□□□ 1.95
PTCD3-220ENST00000627371 NUDCQ9Y266 331 aa27.23■■□□□ 1.95
PTCD3-220ENST00000627371 HMOX1P09601 288 aa27.22■■□□□ 1.95
PTCD3-220ENST00000627371 SPG7Q9UQ90 795 aa27.22■■□□□ 1.95
PTCD3-220ENST00000627371 TRIM37O94972 964 aa27.2■■□□□ 1.94
PTCD3-220ENST00000627371 CYP27B1O15528 508 aa27.18■■□□□ 1.94
PTCD3-220ENST00000627371 SF3B2Q13435 895 aaKnown RBP27.18■■□□□ 1.94
PTCD3-220ENST00000627371 AMOTQ4VCS5 1084 aa27.18■■□□□ 1.94
PTCD3-220ENST00000627371 TOGARAM1Q9Y4F4 1720 aa27.18■■□□□ 1.94
PTCD3-220ENST00000627371 PLEKHO1Q53GL0 409 aaPredicted RBP27.17■■□□□ 1.94
PTCD3-220ENST00000627371 BTAF1O14981 1849 aa27.16■■□□□ 1.94
PTCD3-220ENST00000627371 ANP32CO43423 234 aa27.15■■□□□ 1.94
PTCD3-220ENST00000627371 U2AF1L5P0DN76 240 aaPredicted RBP27.15■■□□□ 1.94
PTCD3-220ENST00000627371 U2AF1Q01081 240 aaKnown RBP eCLIP27.15■■□□□ 1.94
PTCD3-220ENST00000627371 ITGB4P16144 1822 aa27.15■■□□□ 1.94
PTCD3-220ENST00000627371 RGPD3A6NKT7 1758 aaPredicted RBP27.14■■□□□ 1.94
PTCD3-220ENST00000627371 RGPD4Q7Z3J3 1758 aa27.14■■□□□ 1.94
PTCD3-220ENST00000627371 VIRMAQ69YN4 1812 aaKnown RBP27.14■■□□□ 1.94
PTCD3-220ENST00000627371 PHKG2P15735 406 aa27.13■■□□□ 1.93
PTCD3-220ENST00000627371 IFNL2Q8IZJ0 200 aa27.13■■□□□ 1.93
PTCD3-220ENST00000627371 ACSBG1Q96GR2 724 aa27.13■■□□□ 1.93
PTCD3-220ENST00000627371 BCL11BQ9C0K0 894 aaPredicted RBP27.13■■□□□ 1.93
PTCD3-220ENST00000627371 RSPH6AQ9H0K4 717 aa27.13■■□□□ 1.93
PTCD3-220ENST00000627371 NKX1-1Q15270 411 aaPredicted RBP27.12■■□□□ 1.93
PTCD3-220ENST00000627371 ZNF530Q6P9A1 599 aaPredicted RBP27.11■■□□□ 1.93
PTCD3-220ENST00000627371 KCNQ2O43526 872 aa27.1■■□□□ 1.93
PTCD3-220ENST00000627371 BAG6P46379 1132 aa27.1■■□□□ 1.93
PTCD3-220ENST00000627371 PTF1AQ7RTS3 328 aa27.1■■□□□ 1.93
PTCD3-220ENST00000627371 SCN11AQ9UI33 1791 aa27.09■■□□□ 1.93
PTCD3-220ENST00000627371 FCHSD2O94868 740 aa27.09■■□□□ 1.93
PTCD3-220ENST00000627371 PRKAR2BP31323 418 aa27.09■■□□□ 1.93
PTCD3-220ENST00000627371 APBA3O96018 575 aa27.08■■□□□ 1.93
PTCD3-220ENST00000627371 DEFB132Q7Z7B7 95 aa27.08■■□□□ 1.93
PTCD3-220ENST00000627371 RREB1Q92766 1687 aa27.07■■□□□ 1.92
PTCD3-220ENST00000627371 HSP90AB1P08238 724 aaKnown RBP27.06■■□□□ 1.92
PTCD3-220ENST00000627371 C1orf141Q5JVX7 400 aa27.06■■□□□ 1.92
PTCD3-220ENST00000627371 PRIM1P49642 420 aaKnown RBP27.05■■□□□ 1.92
PTCD3-220ENST00000627371 MTHFSDQ2M296 383 aaKnown RBP27.05■■□□□ 1.92
PTCD3-220ENST00000627371 ADAMTS7Q9UKP4 1686 aa27.05■■□□□ 1.92
PTCD3-220ENST00000627371 SYTL4Q96C24 671 aaPredicted RBP27.04■■□□□ 1.92
PTCD3-220ENST00000627371 KDM6AO15550 1401 aaPredicted RBP27.04■■□□□ 1.92
PTCD3-220ENST00000627371 EN1Q05925 392 aaPredicted RBP27.03■■□□□ 1.92
PTCD3-220ENST00000627371 AKAP4Q5JQC9 854 aa27.03■■□□□ 1.92
PTCD3-220ENST00000627371 DCAF5Q96JK2 942 aa27.03■■□□□ 1.92
PTCD3-220ENST00000627371 GAS2L2Q8NHY3 880 aa27.02■■□□□ 1.92
PTCD3-220ENST00000627371 PHACTR3Q96KR7 559 aa27.02■■□□□ 1.92
PTCD3-220ENST00000627371 DLG5Q8TDM6 1919 aa27.02■■□□□ 1.92
PTCD3-220ENST00000627371 PLSCR1O15162 318 aa27.01■■□□□ 1.91
PTCD3-220ENST00000627371 CAMKK2Q96RR4 588 aa27.01■■□□□ 1.91
PTCD3-220ENST00000627371 LY75O60449 1722 aa27■■□□□ 1.91
PTCD3-220ENST00000627371 NUP188Q5SRE5 1749 aa27■■□□□ 1.91
PTCD3-220ENST00000627371 WDR43Q15061 677 aaKnown RBP eCLIP27■■□□□ 1.91
PTCD3-220ENST00000627371 PNNQ9H307 717 aaKnown RBP27■■□□□ 1.91
PTCD3-220ENST00000627371 PLEKHF1Q96S99 279 aa26.99■■□□□ 1.91
PTCD3-220ENST00000627371 EZH2Q15910 746 aaKnown RBP26.98■■□□□ 1.91
PTCD3-220ENST00000627371 CCDC184Q52MB2 194 aa26.98■■□□□ 1.91
PTCD3-220ENST00000627371 MAP3K5Q99683 1374 aa26.97■■□□□ 1.91
PTCD3-220ENST00000627371 ERVV-2B6SEH9 535 aa26.97■■□□□ 1.91
PTCD3-220ENST00000627371 MPRIPQ6WCQ1 1025 aa26.97■■□□□ 1.91
PTCD3-220ENST00000627371 MRC1P22897 1456 aa26.96■■□□□ 1.91
PTCD3-220ENST00000627371 NEFMP07197 916 aa26.96■■□□□ 1.91
PTCD3-220ENST00000627371 TMOD3Q9NYL9 352 aa26.95■■□□□ 1.9
PTCD3-220ENST00000627371 MAPK8IP3Q9UPT6 1336 aa26.93■■□□□ 1.9
PTCD3-220ENST00000627371 GNAT3A8MTJ3 354 aa26.93■■□□□ 1.9
PTCD3-220ENST00000627371 PIGBQ92521 554 aa26.93■■□□□ 1.9
PTCD3-220ENST00000627371 MRS2Q9HD23 443 aa26.93■■□□□ 1.9
PTCD3-220ENST00000627371 ADAMTS8Q9UP79 889 aa26.93■■□□□ 1.9
PTCD3-220ENST00000627371 SIPA1L3O60292 1781 aaPredicted RBP26.93■■□□□ 1.9
PTCD3-220ENST00000627371 RNMTO43148 476 aaKnown RBP26.92■■□□□ 1.9
PTCD3-220ENST00000627371 LGR6Q9HBX8 967 aa26.91■■□□□ 1.9
PTCD3-220ENST00000627371 CABP4P57796 275 aa26.9■■□□□ 1.9
PTCD3-220ENST00000627371 TXNRD1Q16881 649 aa26.89■■□□□ 1.9
PTCD3-220ENST00000627371 PROM2Q8N271 834 aa26.89■■□□□ 1.9
PTCD3-220ENST00000627371 PAPPAQ13219 1627 aa26.89■■□□□ 1.9
PTCD3-220ENST00000627371 PALLDQ8WX93 1383 aa26.88■■□□□ 1.89
PTCD3-220ENST00000627371 CEMIPQ8WUJ3 1361 aa26.87■■□□□ 1.89
PTCD3-220ENST00000627371 NFE2L2Q16236 605 aa26.87■■□□□ 1.89
PTCD3-220ENST00000627371 DIEXFQ68CQ4 756 aaKnown RBP26.87■■□□□ 1.89
PTCD3-220ENST00000627371 SMARCC1Q92922 1105 aaPredicted RBP26.87■■□□□ 1.89
PTCD3-220ENST00000627371 SLC52A2Q9HAB3 445 aa26.87■■□□□ 1.89
PTCD3-220ENST00000627371 TAF1LQ8IZX4 1826 aa26.86■■□□□ 1.89
PTCD3-220ENST00000627371 CCDC146Q8IYE0 955 aa26.86■■□□□ 1.89
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms