RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 KIF20BQ96Q89 1820 aa17.26■□□□□ 0.35
PNKP-217ENST00000625216 USHBP1Q8N6Y0 703 aa17.25■□□□□ 0.35
PNKP-217ENST00000625216 KNSTRNQ9Y448 316 aa17.25■□□□□ 0.35
PNKP-217ENST00000625216 RGPD3A6NKT7 1758 aaPredicted RBP17.25■□□□□ 0.35
PNKP-217ENST00000625216 RGPD4Q7Z3J3 1758 aa17.25■□□□□ 0.35
PNKP-217ENST00000625216 MEGF6O75095 1541 aa17.23■□□□□ 0.35
PNKP-217ENST00000625216 LRP5O75197 1615 aa17.22■□□□□ 0.35
PNKP-217ENST00000625216 PRIM1P49642 420 aaKnown RBP17.22■□□□□ 0.35
PNKP-217ENST00000625216 ANO8Q9HCE9 1232 aaPredicted RBP17.22■□□□□ 0.35
PNKP-217ENST00000625216 STK32BQ9NY57 414 aa17.22■□□□□ 0.35
PNKP-217ENST00000625216 NUP188Q5SRE5 1749 aa17.21■□□□□ 0.35
PNKP-217ENST00000625216 TNNT2P45379 298 aaPredicted RBP17.21■□□□□ 0.35
PNKP-217ENST00000625216 MORC1Q86VD1 984 aa17.21■□□□□ 0.35
PNKP-217ENST00000625216 PCDH11XQ9BZA7 1347 aa17.21■□□□□ 0.34
PNKP-217ENST00000625216 PCDH11YQ9BZA8 1340 aa17.21■□□□□ 0.34
PNKP-217ENST00000625216 NHSQ6T4R5 1651 aa17.2■□□□□ 0.34
PNKP-217ENST00000625216 SLC15A2Q16348 729 aa17.2■□□□□ 0.34
PNKP-217ENST00000625216 SLC27A3Q5K4L6 730 aa17.2■□□□□ 0.34
PNKP-217ENST00000625216 SYTL4Q96C24 671 aaPredicted RBP17.2■□□□□ 0.34
PNKP-217ENST00000625216 EYA1Q99502 592 aa17.2■□□□□ 0.34
PNKP-217ENST00000625216 SPON1Q9HCB6 807 aa17.2■□□□□ 0.34
PNKP-217ENST00000625216 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.2■□□□□ 0.34
PNKP-217ENST00000625216 NCAPD2Q15021 1401 aa17.19■□□□□ 0.34
PNKP-217ENST00000625216 EIF4A2Q14240 407 aaKnown RBP17.18■□□□□ 0.34
PNKP-217ENST00000625216 SPG7Q9UQ90 795 aa17.18■□□□□ 0.34
PNKP-217ENST00000625216 CYP27B1O15528 508 aa17.16■□□□□ 0.34
PNKP-217ENST00000625216 HMGB2P26583 209 aaKnown RBP17.16■□□□□ 0.34
PNKP-217ENST00000625216 AMER1Q5JTC6 1135 aaPredicted RBP17.16■□□□□ 0.34
PNKP-217ENST00000625216 PLEKHG2Q9H7P9 1386 aa17.15■□□□□ 0.34
PNKP-217ENST00000625216 RGPD2P0DJD1 1756 aa17.15■□□□□ 0.34
PNKP-217ENST00000625216 NKX1-1Q15270 411 aaPredicted RBP17.15■□□□□ 0.34
PNKP-217ENST00000625216 LRRC4BQ9NT99 713 aa17.15■□□□□ 0.34
PNKP-217ENST00000625216 ANKRD26Q9UPS8 1709 aa17.14■□□□□ 0.33
PNKP-217ENST00000625216 PER1O15534 1290 aaPredicted RBP17.14■□□□□ 0.33
PNKP-217ENST00000625216 IGSF1Q8N6C5 1336 aa17.13■□□□□ 0.33
PNKP-217ENST00000625216 MAP2P11137 1827 aaKnown RBP17.12■□□□□ 0.33
PNKP-217ENST00000625216 IFNL2Q8IZJ0 200 aa17.12■□□□□ 0.33
PNKP-217ENST00000625216 MIER1Q8N108 512 aa17.12■□□□□ 0.33
PNKP-217ENST00000625216 PPP1R1BQ9UD71 204 aaPredicted RBP17.12■□□□□ 0.33
PNKP-217ENST00000625216 AKT1S1Q96B36 256 aa17.11■□□□□ 0.33
PNKP-217ENST00000625216 BTAF1O14981 1849 aa17.11■□□□□ 0.33
PNKP-217ENST00000625216 KAT6BQ8WYB5 2073 aa17.11■□□□□ 0.33
PNKP-217ENST00000625216 MPRIPQ6WCQ1 1025 aa17.1■□□□□ 0.33
PNKP-217ENST00000625216 SMARCC1Q92922 1105 aaPredicted RBP17.1■□□□□ 0.33
PNKP-217ENST00000625216 PDGFDQ9GZP0 370 aaPredicted RBP17.1■□□□□ 0.33
PNKP-217ENST00000625216 MTFR1LQ9H019 292 aa17.1■□□□□ 0.33
PNKP-217ENST00000625216 CCNL1Q9UK58 526 aaPredicted RBP17.1■□□□□ 0.33
PNKP-217ENST00000625216 ZBTB7AO95365 584 aa17.09■□□□□ 0.33
PNKP-217ENST00000625216 PHKG2P15735 406 aa17.09■□□□□ 0.33
PNKP-217ENST00000625216 ZNF827Q17R98 1081 aa17.09■□□□□ 0.33
PNKP-217ENST00000625216 AMOTQ4VCS5 1084 aa17.09■□□□□ 0.33
PNKP-217ENST00000625216 PLEKHO1Q53GL0 409 aaPredicted RBP17.09■□□□□ 0.33
PNKP-217ENST00000625216 SHANK3Q9BYB0 1731 aa17.09■□□□□ 0.33
PNKP-217ENST00000625216 NPC1L1Q9UHC9 1359 aa17.08■□□□□ 0.32
PNKP-217ENST00000625216 SLC16A10Q8TF71 515 aa17.08■□□□□ 0.32
PNKP-217ENST00000625216 HSP90AB1P08238 724 aaKnown RBP17.07■□□□□ 0.32
PNKP-217ENST00000625216 IL13P35225 146 aa17.07■□□□□ 0.32
PNKP-217ENST00000625216 TFCP2L1Q9NZI6 479 aa17.07■□□□□ 0.32
PNKP-217ENST00000625216 ATF5Q9Y2D1 282 aaPredicted RBP17.07■□□□□ 0.32
PNKP-217ENST00000625216 PTGER2P43116 358 aa17.06■□□□□ 0.32
PNKP-217ENST00000625216 MTHFSP49914 203 aa17.06■□□□□ 0.32
PNKP-217ENST00000625216 PIGBQ92521 554 aa17.06■□□□□ 0.32
PNKP-217ENST00000625216 DOT1LQ8TEK3 1739 aa17.06■□□□□ 0.32
PNKP-217ENST00000625216 PALLDQ8WX93 1383 aa17.05■□□□□ 0.32
PNKP-217ENST00000625216 KCNQ4P56696 695 aa17.05■□□□□ 0.32
PNKP-217ENST00000625216 CC2D1BQ5T0F9 858 aaKnown RBP17.05■□□□□ 0.32
PNKP-217ENST00000625216 TMOD3Q9NYL9 352 aa17.05■□□□□ 0.32
PNKP-217ENST00000625216 PAPPAQ13219 1627 aa17.05■□□□□ 0.32
PNKP-217ENST00000625216 CASZ1Q86V15 1759 aa17.05■□□□□ 0.32
PNKP-217ENST00000625216 PKD1L3Q7Z443 1732 aa17.04■□□□□ 0.32
PNKP-217ENST00000625216 SULT6B1Q6IMI4 303 aa17.04■□□□□ 0.32
PNKP-217ENST00000625216 DCAF5Q96JK2 942 aa17.04■□□□□ 0.32
PNKP-217ENST00000625216 ERVV-2B6SEH9 535 aa17.03■□□□□ 0.32
PNKP-217ENST00000625216 SGIP1Q9BQI5 828 aa17.03■□□□□ 0.32
PNKP-217ENST00000625216 KDRP35968 1356 aa17.02■□□□□ 0.32
PNKP-217ENST00000625216 PNPLA7Q6ZV29 1317 aa17.02■□□□□ 0.32
PNKP-217ENST00000625216 DCAF8L1A6NGE4 600 aa17.02■□□□□ 0.32
PNKP-217ENST00000625216 ANP32CO43423 234 aa17.02■□□□□ 0.32
PNKP-217ENST00000625216 ZNF530Q6P9A1 599 aaPredicted RBP17.02■□□□□ 0.32
PNKP-217ENST00000625216 AEBP1Q8IUX7 1158 aa17.02■□□□□ 0.32
PNKP-217ENST00000625216 FLAD1Q8NFF5 587 aa17.02■□□□□ 0.32
PNKP-217ENST00000625216 LY75O60449 1722 aa17■□□□□ 0.31
PNKP-217ENST00000625216 DIAPH1O60610 1272 aaKnown RBP17■□□□□ 0.31
PNKP-217ENST00000625216 C1orf141Q5JVX7 400 aa17■□□□□ 0.31
PNKP-217ENST00000625216 ARXQ96QS3 562 aa17■□□□□ 0.31
PNKP-217ENST00000625216 LOC102724428A0A0B4J2F2 783 aa16.99■□□□□ 0.31
PNKP-217ENST00000625216 POLD1P28340 1107 aa16.99■□□□□ 0.31
PNKP-217ENST00000625216 SIK1P57059 783 aa16.99■□□□□ 0.31
PNKP-217ENST00000625216 PRKRIP1Q9H875 184 aaPredicted RBP16.98■□□□□ 0.31
PNKP-217ENST00000625216 ATG3Q9NT62 314 aa16.98■□□□□ 0.31
PNKP-217ENST00000625216 ASAP1Q9ULH1 1129 aa16.98■□□□□ 0.31
PNKP-217ENST00000625216 CABP4P57796 275 aa16.97■□□□□ 0.31
PNKP-217ENST00000625216 COL23A1Q86Y22 540 aaPredicted RBP16.97■□□□□ 0.31
PNKP-217ENST00000625216 MSH5O43196 834 aa16.96■□□□□ 0.31
PNKP-217ENST00000625216 AKAP4Q5JQC9 854 aa16.96■□□□□ 0.31
PNKP-217ENST00000625216 AK7Q96M32 723 aa16.96■□□□□ 0.31
PNKP-217ENST00000625216 SYT17Q9BSW7 474 aa16.96■□□□□ 0.31
PNKP-217ENST00000625216 FHDC1Q9C0D6 1143 aaPredicted RBP16.96■□□□□ 0.31
PNKP-217ENST00000625216 TOGARAM1Q9Y4F4 1720 aa16.95■□□□□ 0.3
PNKP-217ENST00000625216 MAP3K5Q99683 1374 aa16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms