RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 KRT32Q14532 448 aa10.47□□□□□ -0.73
VCL-206ENST00000623461 KIF5CO60282 957 aa10.47□□□□□ -0.73
VCL-206ENST00000623461 SH2B1Q9NRF2 756 aaPredicted RBP10.47□□□□□ -0.73
VCL-206ENST00000623461 TXLNAP40222 546 aa10.47□□□□□ -0.73
VCL-206ENST00000623461 HECW1Q76N89 1606 aa10.47□□□□□ -0.73
VCL-206ENST00000623461 ARHGAP29Q52LW3 1261 aa10.47□□□□□ -0.73
VCL-206ENST00000623461 AMOTL1Q8IY63 956 aa10.47□□□□□ -0.73
VCL-206ENST00000623461 MAP3K1Q13233 1512 aa10.46□□□□□ -0.73
VCL-206ENST00000623461 BLOC1S2Q6QNY1 142 aa10.46□□□□□ -0.73
VCL-206ENST00000623461 FAM193AP78312 1265 aa10.46□□□□□ -0.73
VCL-206ENST00000623461 ODF2Q5BJF6 829 aa10.46□□□□□ -0.73
VCL-206ENST00000623461 BRPF1P55201 1214 aaPredicted RBP10.46□□□□□ -0.73
VCL-206ENST00000623461 HSP90AB2PQ58FF8 381 aa10.46□□□□□ -0.73
VCL-206ENST00000623461 TSR2Q969E8 191 aaKnown RBP10.46□□□□□ -0.73
VCL-206ENST00000623461 RARSP54136 660 aaKnown RBP10.46□□□□□ -0.74
VCL-206ENST00000623461 DYDC1Q8WWB3 177 aa10.46□□□□□ -0.74
VCL-206ENST00000623461 BMP2KLQ5H9B9 411 aa10.46□□□□□ -0.74
VCL-206ENST00000623461 RRAGDQ9NQL2 400 aaPredicted RBP10.46□□□□□ -0.74
VCL-206ENST00000623461 GPRASP1Q5JY77 1395 aa10.46□□□□□ -0.74
VCL-206ENST00000623461 TRERF1Q96PN7 1200 aa10.46□□□□□ -0.74
VCL-206ENST00000623461 SNW1Q13573 536 aaKnown RBP10.45□□□□□ -0.74
VCL-206ENST00000623461 STIM1Q13586 685 aa10.45□□□□□ -0.74
VCL-206ENST00000623461 ALDH1L2Q3SY69 923 aa10.45□□□□□ -0.74
VCL-206ENST00000623461 CCDC83Q8IWF9 413 aa10.45□□□□□ -0.74
VCL-206ENST00000623461 DNAAF4Q8WXU2 420 aa10.45□□□□□ -0.74
VCL-206ENST00000623461 RBM33Q96EV2 1170 aaKnown RBP10.45□□□□□ -0.74
VCL-206ENST00000623461 UBE2HP62256 183 aa10.45□□□□□ -0.74
VCL-206ENST00000623461 HMOX1P09601 288 aa10.45□□□□□ -0.74
VCL-206ENST00000623461 C8orf34Q49A92 452 aa10.45□□□□□ -0.74
VCL-206ENST00000623461 CCDC150Q8NCX0 1101 aa10.45□□□□□ -0.74
VCL-206ENST00000623461 CFAP100Q494V2 611 aa10.45□□□□□ -0.74
VCL-206ENST00000623461 SART3Q15020 963 aaKnown RBP10.45□□□□□ -0.74
VCL-206ENST00000623461 ZNF397Q8NF99 534 aaPredicted RBP10.45□□□□□ -0.74
VCL-206ENST00000623461 LMAN1P49257 510 aa10.44□□□□□ -0.74
VCL-206ENST00000623461 VPS53Q5VIR6 699 aa10.44□□□□□ -0.74
VCL-206ENST00000623461 TMEM57Q8N5G2 664 aa10.44□□□□□ -0.74
VCL-206ENST00000623461 EID1Q9Y6B2 187 aa10.44□□□□□ -0.74
VCL-206ENST00000623461 LTV1Q96GA3 475 aaPredicted RBP10.44□□□□□ -0.74
VCL-206ENST00000623461 JAKMIP1Q96N16 626 aaKnown RBP10.44□□□□□ -0.74
VCL-206ENST00000623461 MINK1Q8N4C8 1332 aaPredicted RBP10.44□□□□□ -0.74
VCL-206ENST00000623461 DUSP27Q5VZP5 1158 aa10.44□□□□□ -0.74
VCL-206ENST00000623461 NECTIN2Q92692 538 aa10.44□□□□□ -0.74
VCL-206ENST00000623461 CAMK4Q16566 473 aa10.44□□□□□ -0.74
VCL-206ENST00000623461 CT47A1Q5JQC4 288 aaPredicted RBP10.44□□□□□ -0.74
VCL-206ENST00000623461 SKAP1Q86WV1 359 aa10.44□□□□□ -0.74
VCL-206ENST00000623461 SMARCC1Q92922 1105 aaPredicted RBP10.44□□□□□ -0.74
VCL-206ENST00000623461 SRRTQ9BXP5 876 aaKnown RBP10.44□□□□□ -0.74
VCL-206ENST00000623461 NUTM2DQ5VT03 806 aaPredicted RBP10.43□□□□□ -0.74
VCL-206ENST00000623461 NOL7Q9UMY1 257 aaKnown RBP10.43□□□□□ -0.74
VCL-206ENST00000623461 DNMBPQ6XZF7 1577 aa10.43□□□□□ -0.74
VCL-206ENST00000623461 ITSN2Q9NZM3 1697 aa10.43□□□□□ -0.74
VCL-206ENST00000623461 ABCC11Q96J66 1382 aa10.43□□□□□ -0.74
VCL-206ENST00000623461 TOP1P11387 765 aaKnown RBP10.43□□□□□ -0.74
VCL-206ENST00000623461 WASHC4Q2M389 1173 aa10.43□□□□□ -0.74
VCL-206ENST00000623461 THOC2Q8NI27 1593 aaKnown RBP10.43□□□□□ -0.74
VCL-206ENST00000623461 PRKAR2BP31323 418 aa10.43□□□□□ -0.74
VCL-206ENST00000623461 GGNBP2Q9H3C7 697 aa10.43□□□□□ -0.74
VCL-206ENST00000623461 STX1AQ16623 288 aa10.43□□□□□ -0.74
VCL-206ENST00000623461 PRXQ9BXM0 1461 aa10.42□□□□□ -0.74
VCL-206ENST00000623461 GABPB1Q06547 395 aaPredicted RBP10.42□□□□□ -0.74
VCL-206ENST00000623461 RAB3GAP1Q15042 981 aa10.42□□□□□ -0.74
VCL-206ENST00000623461 KIF4BQ2VIQ3 1234 aa10.42□□□□□ -0.74
VCL-206ENST00000623461 CFTRP13569 1480 aa10.42□□□□□ -0.74
VCL-206ENST00000623461 CDKL5O76039 1030 aa10.42□□□□□ -0.74
VCL-206ENST00000623461 MNAT1P51948 309 aa10.42□□□□□ -0.74
VCL-206ENST00000623461 TUBB4BP68371 445 aa10.42□□□□□ -0.74
VCL-206ENST00000623461 STK3Q13188 491 aa10.42□□□□□ -0.74
VCL-206ENST00000623461 IMMTQ16891 758 aaKnown RBP10.42□□□□□ -0.74
VCL-206ENST00000623461 LRRFIP2Q9Y608 721 aaKnown RBP10.42□□□□□ -0.74
VCL-206ENST00000623461 GOLGA6L10A0A0M3HER8 536 aa10.42□□□□□ -0.74
VCL-206ENST00000623461 KIAA1328Q86T90 577 aa10.42□□□□□ -0.74
VCL-206ENST00000623461 SMC5Q8IY18 1101 aa10.42□□□□□ -0.74
VCL-206ENST00000623461 RBM27Q9P2N5 1060 aaKnown RBP10.42□□□□□ -0.74
VCL-206ENST00000623461 NAIPQ13075 1403 aa10.42□□□□□ -0.74
VCL-206ENST00000623461 HMGB2P26583 209 aaKnown RBP10.42□□□□□ -0.74
VCL-206ENST00000623461 LUZP1Q86V48 1076 aa10.42□□□□□ -0.74
VCL-206ENST00000623461 SLC26A8Q96RN1 970 aa10.42□□□□□ -0.74
VCL-206ENST00000623461 GAS2L2Q8NHY3 880 aa10.41□□□□□ -0.74
VCL-206ENST00000623461 TTC5Q8N0Z6 440 aa10.41□□□□□ -0.74
VCL-206ENST00000623461 TRMT1Q9NXH9 659 aaKnown RBP10.41□□□□□ -0.74
VCL-206ENST00000623461 LIMCH1Q9UPQ0 1083 aa10.41□□□□□ -0.74
VCL-206ENST00000623461 CASTP20810 708 aaKnown RBP10.41□□□□□ -0.74
VCL-206ENST00000623461 TTC31Q49AM3 519 aaPredicted RBP10.41□□□□□ -0.74
VCL-206ENST00000623461 ARFGAP3Q9NP61 516 aa10.41□□□□□ -0.74
VCL-206ENST00000623461 V9GYY5 206 aaPredicted RBP10.41□□□□□ -0.74
VCL-206ENST00000623461 FGD5Q6ZNL6 1462 aa10.41□□□□□ -0.74
VCL-206ENST00000623461 SLU7O95391 586 aaKnown RBP10.41□□□□□ -0.74
VCL-206ENST00000623461 RASSF4Q9H2L5 321 aa10.41□□□□□ -0.74
VCL-206ENST00000623461 NF2P35240 595 aa10.4□□□□□ -0.74
VCL-206ENST00000623461 ZNF644Q9H582 1327 aaPredicted RBP10.4□□□□□ -0.74
VCL-206ENST00000623461 KAT6BQ8WYB5 2073 aa10.4□□□□□ -0.74
VCL-206ENST00000623461 ANKRD18AQ8IVF6 992 aa10.4□□□□□ -0.74
VCL-206ENST00000623461 IGHDP01880 384 aa10.4□□□□□ -0.74
VCL-206ENST00000623461 MX1P20591 662 aa10.4□□□□□ -0.74
VCL-206ENST00000623461 TBC1D9Q6ZT07 1266 aa10.4□□□□□ -0.74
VCL-206ENST00000623461 TRIM34Q9BYJ4 488 aa10.4□□□□□ -0.74
VCL-206ENST00000623461 IPO4Q8TEX9 1081 aaKnown RBP10.4□□□□□ -0.74
VCL-206ENST00000623461 NEUROD6Q96NK8 337 aa10.4□□□□□ -0.74
VCL-206ENST00000623461 HDAC1Q13547 482 aaPredicted RBP10.4□□□□□ -0.74
VCL-206ENST00000623461 RIC3Q7Z5B4 369 aa10.4□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms