RNA–Protein interactions for RNA: ENST00000621783.4

CPNE3-212, Transcript of copine 3, humanhuman

TSL 5

Gene CPNE3, Length 817 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-212ENST00000621783 CRB1P82279 1406 aa13.94□□□□□ -0.18
CPNE3-212ENST00000621783 STRN4Q9NRL3 753 aa13.94□□□□□ -0.18
CPNE3-212ENST00000621783 BTG4Q9NY30 223 aa13.94□□□□□ -0.18
CPNE3-212ENST00000621783 MAP3K5Q99683 1374 aa13.94□□□□□ -0.18
CPNE3-212ENST00000621783 IL16Q14005 1332 aa13.93□□□□□ -0.18
CPNE3-212ENST00000621783 SPATA31A6Q5VVP1 1343 aa13.93□□□□□ -0.18
CPNE3-212ENST00000621783 LARP1Q6PKG0 1096 aaKnown RBP13.93□□□□□ -0.18
CPNE3-212ENST00000621783 TOM1L2Q6ZVM7 507 aa13.93□□□□□ -0.18
CPNE3-212ENST00000621783 TRMT2AQ8IZ69 625 aaKnown RBP13.93□□□□□ -0.18
CPNE3-212ENST00000621783 THUMPD2Q9BTF0 503 aaKnown RBP13.93□□□□□ -0.18
CPNE3-212ENST00000621783 SLIT2O94813 1529 aa13.93□□□□□ -0.18
CPNE3-212ENST00000621783 OVOS2A0A0G2JMS6 1433 aa13.92□□□□□ -0.18
CPNE3-212ENST00000621783 EVA1CP58658 441 aa13.92□□□□□ -0.18
CPNE3-212ENST00000621783 RAPGEF4Q8WZA2 1011 aa13.92□□□□□ -0.18
CPNE3-212ENST00000621783 CARD10Q9BWT7 1032 aa13.92□□□□□ -0.18
CPNE3-212ENST00000621783 CALD1Q05682 793 aaKnown RBP13.91□□□□□ -0.18
CPNE3-212ENST00000621783 DCTN1Q14203 1278 aa13.91□□□□□ -0.18
CPNE3-212ENST00000621783 PLEKHO1Q53GL0 409 aaPredicted RBP13.91□□□□□ -0.18
CPNE3-212ENST00000621783 SHANK3Q9BYB0 1731 aa13.9□□□□□ -0.18
CPNE3-212ENST00000621783 TATP17735 454 aaPredicted RBP13.9□□□□□ -0.18
CPNE3-212ENST00000621783 MAPK8IP2Q13387 824 aaPredicted RBP13.9□□□□□ -0.18
CPNE3-212ENST00000621783 AMOTQ4VCS5 1084 aa13.9□□□□□ -0.18
CPNE3-212ENST00000621783 ZNF530Q6P9A1 599 aaPredicted RBP13.9□□□□□ -0.18
CPNE3-212ENST00000621783 MYH16Q9H6N6 1097 aa13.9□□□□□ -0.18
CPNE3-212ENST00000621783 ADAMTS7Q9UKP4 1686 aa13.9□□□□□ -0.18
CPNE3-212ENST00000621783 FANCIQ9NVI1 1328 aa13.9□□□□□ -0.19
CPNE3-212ENST00000621783 GNAT3A8MTJ3 354 aa13.89□□□□□ -0.19
CPNE3-212ENST00000621783 HTATSF1O43719 755 aaKnown RBP13.89□□□□□ -0.19
CPNE3-212ENST00000621783 MCM10Q7L590 875 aa13.89□□□□□ -0.19
CPNE3-212ENST00000621783 VIRMAQ69YN4 1812 aaKnown RBP13.89□□□□□ -0.19
CPNE3-212ENST00000621783 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.89□□□□□ -0.19
CPNE3-212ENST00000621783 DISP2A7MBM2 1401 aa13.89□□□□□ -0.19
CPNE3-212ENST00000621783 RTF1Q92541 710 aaKnown RBP13.88□□□□□ -0.19
CPNE3-212ENST00000621783 TSR2Q969E8 191 aaKnown RBP13.88□□□□□ -0.19
CPNE3-212ENST00000621783 IFT57Q9NWB7 429 aa13.88□□□□□ -0.19
CPNE3-212ENST00000621783 AKAP4Q5JQC9 854 aa13.87□□□□□ -0.19
CPNE3-212ENST00000621783 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.87□□□□□ -0.191e-6■□□□□ 11.1
CPNE3-212ENST00000621783 CEMIPQ8WUJ3 1361 aa13.86□□□□□ -0.19
CPNE3-212ENST00000621783 ZNF853P0CG23 659 aa13.86□□□□□ -0.19
CPNE3-212ENST00000621783 IL2RBP14784 551 aa13.86□□□□□ -0.19
CPNE3-212ENST00000621783 GNAI1P63096 354 aa13.86□□□□□ -0.19
CPNE3-212ENST00000621783 C1orf141Q5JVX7 400 aa13.86□□□□□ -0.19
CPNE3-212ENST00000621783 C8orf37Q96NL8 207 aa13.86□□□□□ -0.19
CPNE3-212ENST00000621783 RCAN3Q9UKA8 241 aa13.86□□□□□ -0.19
CPNE3-212ENST00000621783 SPG7Q9UQ90 795 aa13.86□□□□□ -0.19
CPNE3-212ENST00000621783 LAS1LQ9Y4W2 734 aaKnown RBP13.86□□□□□ -0.19
CPNE3-212ENST00000621783 SUPT16HQ9Y5B9 1047 aaKnown RBP13.86□□□□□ -0.19
CPNE3-212ENST00000621783 SCN11AQ9UI33 1791 aa13.86□□□□□ -0.19
CPNE3-212ENST00000621783 KDM6AO15550 1401 aaPredicted RBP13.85□□□□□ -0.19
CPNE3-212ENST00000621783 CFAP44Q96MT7 982 aa13.85□□□□□ -0.19
CPNE3-212ENST00000621783 SIPA1L3O60292 1781 aaPredicted RBP13.85□□□□□ -0.19
CPNE3-212ENST00000621783 BCL9LQ86UU0 1499 aa13.85□□□□□ -0.19
CPNE3-212ENST00000621783 KDM3BQ7LBC6 1761 aa13.84□□□□□ -0.19
CPNE3-212ENST00000621783 PHKG2P15735 406 aa13.84□□□□□ -0.19
CPNE3-212ENST00000621783 IL17REQ8NFR9 667 aa13.84□□□□□ -0.19
CPNE3-212ENST00000621783 MBIPQ9NS73 344 aa13.84□□□□□ -0.19
CPNE3-212ENST00000621783 USP35Q9P2H5 1018 aa13.84□□□□□ -0.19
CPNE3-212ENST00000621783 MRC1P22897 1456 aa13.84□□□□□ -0.19
CPNE3-212ENST00000621783 SPATA31A1Q5TZJ5 1347 aa13.84□□□□□ -0.19
CPNE3-212ENST00000621783 EXOSC9Q06265 439 aaKnown RBP13.83□□□□□ -0.2
CPNE3-212ENST00000621783 NGLY1Q96IV0 654 aa13.83□□□□□ -0.2
CPNE3-212ENST00000621783 SPATA31A5Q5VU36 1347 aa13.83□□□□□ -0.2
CPNE3-212ENST00000621783 RNF123Q5XPI4 1314 aa13.83□□□□□ -0.2
CPNE3-212ENST00000621783 SPATA31A7Q8IWB4 1347 aa13.83□□□□□ -0.2
CPNE3-212ENST00000621783 PCDH11XQ9BZA7 1347 aa13.83□□□□□ -0.2
CPNE3-212ENST00000621783 PCDH11YQ9BZA8 1340 aa13.83□□□□□ -0.2
CPNE3-212ENST00000621783 TNS2Q63HR2 1409 aa13.82□□□□□ -0.2
CPNE3-212ENST00000621783 RNMTO43148 476 aaKnown RBP13.82□□□□□ -0.2
CPNE3-212ENST00000621783 MEX3CQ5U5Q3 659 aaKnown RBP13.82□□□□□ -0.2
CPNE3-212ENST00000621783 MPRIPQ6WCQ1 1025 aa13.82□□□□□ -0.2
CPNE3-212ENST00000621783 UNC5CLQ8IV45 518 aa13.82□□□□□ -0.2
CPNE3-212ENST00000621783 FNBP4Q8N3X1 1017 aaPredicted RBP13.82□□□□□ -0.2
CPNE3-212ENST00000621783 ZCRB1Q8TBF4 217 aaKnown RBP13.82□□□□□ -0.2
CPNE3-212ENST00000621783 TOGARAM1Q9Y4F4 1720 aa13.81□□□□□ -0.2
CPNE3-212ENST00000621783 CHL1O00533 1208 aa13.81□□□□□ -0.2
CPNE3-212ENST00000621783 CYP27B1O15528 508 aa13.81□□□□□ -0.2
CPNE3-212ENST00000621783 IFNL2Q8IZJ0 200 aa13.81□□□□□ -0.2
CPNE3-212ENST00000621783 LGR6Q9HBX8 967 aa13.81□□□□□ -0.2
CPNE3-212ENST00000621783 CT47B1P0C2W7 299 aaPredicted RBP13.8□□□□□ -0.2
CPNE3-212ENST00000621783 RRP1P56182 461 aaKnown RBP13.8□□□□□ -0.2
CPNE3-212ENST00000621783 VPS72Q15906 364 aa13.8□□□□□ -0.2
CPNE3-212ENST00000621783 THRAP3Q9Y2W1 955 aaKnown RBP13.8□□□□□ -0.2
CPNE3-212ENST00000621783 GTF3C3Q9Y5Q9 886 aa13.8□□□□□ -0.2
CPNE3-212ENST00000621783 NEFLP07196 543 aa13.79□□□□□ -0.2
CPNE3-212ENST00000621783 HSP90AB1P08238 724 aaKnown RBP13.79□□□□□ -0.2
CPNE3-212ENST00000621783 TSPYL4Q9UJ04 414 aa13.79□□□□□ -0.2
CPNE3-212ENST00000621783 USP21Q9UK80 565 aa13.79□□□□□ -0.2
CPNE3-212ENST00000621783 CCDC9Q9Y3X0 531 aaKnown RBP13.79□□□□□ -0.2
CPNE3-212ENST00000621783 TEFQ10587 303 aa13.78□□□□□ -0.2
CPNE3-212ENST00000621783 TAF7Q15545 349 aaPredicted RBP13.78□□□□□ -0.2
CPNE3-212ENST00000621783 BABAM1Q9NWV8 329 aa13.78□□□□□ -0.2
CPNE3-212ENST00000621783 MIS18AQ9NYP9 233 aa13.78□□□□□ -0.2
CPNE3-212ENST00000621783 AFF2P51816 1311 aa13.78□□□□□ -0.2
CPNE3-212ENST00000621783 GLI3P10071 1580 aa13.78□□□□□ -0.2
CPNE3-212ENST00000621783 THSD7AQ9UPZ6 1657 aa13.78□□□□□ -0.2
CPNE3-212ENST00000621783 ATRNO75882 1429 aa13.77□□□□□ -0.21
CPNE3-212ENST00000621783 RARSP54136 660 aaKnown RBP13.77□□□□□ -0.21
CPNE3-212ENST00000621783 PAPPAQ13219 1627 aa13.77□□□□□ -0.21
CPNE3-212ENST00000621783 BARGINQ6ZT62 677 aa13.77□□□□□ -0.21
CPNE3-212ENST00000621783 DCAF5Q96JK2 942 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms