RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 DENND4BO75064 1496 aaPredicted RBP13.5□□□□□ -0.25
CLIP1-219ENST00000620786 ABCA10Q8WWZ4 1543 aa13.5□□□□□ -0.25
CLIP1-219ENST00000620786 RDXP35241 583 aaKnown RBP13.5□□□□□ -0.25
CLIP1-219ENST00000620786 USP5P45974 858 aa13.5□□□□□ -0.25
CLIP1-219ENST00000620786 TTLL12Q14166 644 aaPredicted RBP13.5□□□□□ -0.25
CLIP1-219ENST00000620786 NME9Q86XW9 330 aa13.5□□□□□ -0.25
CLIP1-219ENST00000620786 NOL7Q9UMY1 257 aaKnown RBP13.5□□□□□ -0.25
CLIP1-219ENST00000620786 BRPF1P55201 1214 aaPredicted RBP13.5□□□□□ -0.25
CLIP1-219ENST00000620786 RABEP1Q15276 862 aa13.5□□□□□ -0.25
CLIP1-219ENST00000620786 CRACR2BQ8N4Y2 399 aaPredicted RBP13.5□□□□□ -0.25
CLIP1-219ENST00000620786 CAGE1Q8TC20 777 aa13.5□□□□□ -0.25
CLIP1-219ENST00000620786 CTNNA3Q9UI47 895 aa13.5□□□□□ -0.25
CLIP1-219ENST00000620786 SMC2O95347 1197 aa13.5□□□□□ -0.25
CLIP1-219ENST00000620786 IBSPP21815 317 aaPredicted RBP13.49□□□□□ -0.25
CLIP1-219ENST00000620786 PIBF1Q8WXW3 757 aa13.49□□□□□ -0.25
CLIP1-219ENST00000620786 DUSP27Q5VZP5 1158 aa13.49□□□□□ -0.25
CLIP1-219ENST00000620786 JMYQ8N9B5 988 aa13.49□□□□□ -0.25
CLIP1-219ENST00000620786 IL1RAPL2Q9NP60 686 aa13.49□□□□□ -0.25
CLIP1-219ENST00000620786 MATR3P43243 847 aaKnown RBP eCLIP13.49□□□□□ -0.25
CLIP1-219ENST00000620786 AK7Q96M32 723 aa13.49□□□□□ -0.25
CLIP1-219ENST00000620786 AKAP2Q9Y2D5 859 aa13.49□□□□□ -0.25
CLIP1-219ENST00000620786 WDHD1O75717 1129 aaPredicted RBP13.49□□□□□ -0.25
CLIP1-219ENST00000620786 POLR3DP05423 398 aaPredicted RBP13.49□□□□□ -0.25
CLIP1-219ENST00000620786 SETQ01105 290 aaPredicted RBP13.49□□□□□ -0.25
CLIP1-219ENST00000620786 MVPQ14764 893 aaKnown RBP13.48□□□□□ -0.25
CLIP1-219ENST00000620786 PDCL3Q9H2J4 239 aa13.48□□□□□ -0.25
CLIP1-219ENST00000620786 DNAJC5BQ9UF47 199 aa13.48□□□□□ -0.25
CLIP1-219ENST00000620786 CDKL5O76039 1030 aa13.48□□□□□ -0.25
CLIP1-219ENST00000620786 LETM1O95202 739 aaPredicted RBP13.48□□□□□ -0.25
CLIP1-219ENST00000620786 IFIT1P09914 478 aaKnown RBP13.48□□□□□ -0.25
CLIP1-219ENST00000620786 LARP1Q6PKG0 1096 aaKnown RBP13.48□□□□□ -0.25
CLIP1-219ENST00000620786 CWC27Q6UX04 472 aaKnown RBP13.48□□□□□ -0.25
CLIP1-219ENST00000620786 SMARCE1Q969G3 411 aa13.48□□□□□ -0.25
CLIP1-219ENST00000620786 PIP4K2AP48426 406 aaPredicted RBP13.48□□□□□ -0.25
CLIP1-219ENST00000620786 MNS1Q8NEH6 495 aa13.48□□□□□ -0.25
CLIP1-219ENST00000620786 TMPOP42166 694 aaKnown RBP13.48□□□□□ -0.25
CLIP1-219ENST00000620786 FMNL2Q96PY5 1086 aa13.48□□□□□ -0.25
CLIP1-219ENST00000620786 TRMT112Q9UI30 125 aaKnown RBP13.48□□□□□ -0.25
CLIP1-219ENST00000620786 PCF11O94913 1555 aaKnown RBP13.47□□□□□ -0.25
CLIP1-219ENST00000620786 WASLO00401 505 aaPredicted RBP13.47□□□□□ -0.25
CLIP1-219ENST00000620786 TAF7Q15545 349 aaPredicted RBP13.47□□□□□ -0.25
CLIP1-219ENST00000620786 HSP90AB3PQ58FF7 597 aa13.47□□□□□ -0.25
CLIP1-219ENST00000620786 DZIP1Q86YF9 867 aaKnown RBP13.47□□□□□ -0.25
CLIP1-219ENST00000620786 AEBP1Q8IUX7 1158 aa13.47□□□□□ -0.25
CLIP1-219ENST00000620786 FIBPO43427 364 aa13.46□□□□□ -0.25
CLIP1-219ENST00000620786 CDR1P51861 262 aa13.46□□□□□ -0.25
CLIP1-219ENST00000620786 DCTN1Q14203 1278 aa13.46□□□□□ -0.25
CLIP1-219ENST00000620786 NUTM1Q86Y26 1132 aa13.46□□□□□ -0.25
CLIP1-219ENST00000620786 ZNF287Q9HBT7 754 aa13.46□□□□□ -0.25
CLIP1-219ENST00000620786 SSBP05455 408 aaKnown RBP eCLIP13.46□□□□□ -0.25
CLIP1-219ENST00000620786 TANGO6Q9C0B7 1094 aa13.46□□□□□ -0.25
CLIP1-219ENST00000620786 BCL11BQ9C0K0 894 aaPredicted RBP13.46□□□□□ -0.25
CLIP1-219ENST00000620786 STIM1Q13586 685 aa13.46□□□□□ -0.25
CLIP1-219ENST00000620786 IMMTQ16891 758 aaKnown RBP13.46□□□□□ -0.25
CLIP1-219ENST00000620786 THUMPD2Q9BTF0 503 aaKnown RBP13.46□□□□□ -0.26
CLIP1-219ENST00000620786 FANCAO15360 1455 aa13.46□□□□□ -0.26
CLIP1-219ENST00000620786 CHD1LQ86WJ1 897 aa13.46□□□□□ -0.26
CLIP1-219ENST00000620786 PDRG1Q9NUG6 133 aa13.45□□□□□ -0.26
CLIP1-219ENST00000620786 BLOC1S2Q6QNY1 142 aa13.45□□□□□ -0.26
CLIP1-219ENST00000620786 FAM13BQ9NYF5 915 aa13.45□□□□□ -0.26
CLIP1-219ENST00000620786 PTPN23Q9H3S7 1636 aa13.45□□□□□ -0.26
CLIP1-219ENST00000620786 CHMP4BP1P59074 171 aa13.45□□□□□ -0.26
CLIP1-219ENST00000620786 IFIT5Q13325 482 aaKnown RBP13.45□□□□□ -0.26
CLIP1-219ENST00000620786 SLC5A1P13866 664 aa13.44□□□□□ -0.26
CLIP1-219ENST00000620786 JAKMIP1Q96N16 626 aaKnown RBP13.44□□□□□ -0.26
CLIP1-219ENST00000620786 TRIM5Q9C035 493 aa13.44□□□□□ -0.26
CLIP1-219ENST00000620786 MSH6P52701 1360 aa13.44□□□□□ -0.26
CLIP1-219ENST00000620786 ME1P48163 572 aa13.44□□□□□ -0.26
CLIP1-219ENST00000620786 MKNK2Q9HBH9 465 aa13.44□□□□□ -0.26
CLIP1-219ENST00000620786 UBAP1LF5GYI3 381 aa13.44□□□□□ -0.26
CLIP1-219ENST00000620786 RNF214Q8ND24 703 aa13.44□□□□□ -0.26
CLIP1-219ENST00000620786 SEC63Q9UGP8 760 aaKnown RBP13.44□□□□□ -0.26
CLIP1-219ENST00000620786 MYO6Q9UM54 1294 aa13.43□□□□□ -0.26
CLIP1-219ENST00000620786 EMILIN1Q9Y6C2 1016 aa13.43□□□□□ -0.26
CLIP1-219ENST00000620786 MINDY4BA8MYZ0 360 aa13.43□□□□□ -0.26
CLIP1-219ENST00000620786 PRPF40AO75400 957 aaKnown RBP13.43□□□□□ -0.26
CLIP1-219ENST00000620786 BMP2KQ9NSY1 1161 aaPredicted RBP13.43□□□□□ -0.26
CLIP1-219ENST00000620786 DACH1Q9UI36 760 aa13.43□□□□□ -0.26
CLIP1-219ENST00000620786 IDI1Q13907 227 aa13.43□□□□□ -0.26
CLIP1-219ENST00000620786 WASF1Q92558 559 aa13.43□□□□□ -0.26
CLIP1-219ENST00000620786 ANKRD18BA2A2Z9 1011 aa13.43□□□□□ -0.26
CLIP1-219ENST00000620786 GPTP24298 496 aa13.42□□□□□ -0.26
CLIP1-219ENST00000620786 TNIP1Q15025 636 aa13.42□□□□□ -0.26
CLIP1-219ENST00000620786 CAVIN1Q6NZI2 390 aaKnown RBP13.42□□□□□ -0.26
CLIP1-219ENST00000620786 TNRQ92752 1358 aa13.42□□□□□ -0.26
CLIP1-219ENST00000620786 KRT32Q14532 448 aa13.42□□□□□ -0.26
CLIP1-219ENST00000620786 CADPS2Q86UW7 1296 aa13.42□□□□□ -0.26
CLIP1-219ENST00000620786 RPAP2Q8IXW5 612 aaPredicted RBP13.42□□□□□ -0.26
CLIP1-219ENST00000620786 C6orf229H3BNL8 230 aa13.42□□□□□ -0.26
CLIP1-219ENST00000620786 RFC4P35249 363 aa13.42□□□□□ -0.26
CLIP1-219ENST00000620786 TSPY26PQ9H489 355 aa13.42□□□□□ -0.26
CLIP1-219ENST00000620786 ADGRF5Q8IZF2 1346 aa13.42□□□□□ -0.26
CLIP1-219ENST00000620786 SCLT1Q96NL6 688 aa13.42□□□□□ -0.26
CLIP1-219ENST00000620786 ACBD3Q9H3P7 528 aa13.42□□□□□ -0.26
CLIP1-219ENST00000620786 ZNHIT6Q9NWK9 470 aaKnown RBP13.42□□□□□ -0.26
CLIP1-219ENST00000620786 NAIPQ13075 1403 aa13.42□□□□□ -0.26
CLIP1-219ENST00000620786 TOM1O60784 492 aa13.41□□□□□ -0.26
CLIP1-219ENST00000620786 WDR78Q5VTH9 848 aa13.41□□□□□ -0.26
CLIP1-219ENST00000620786 LARP1BQ659C4 914 aaKnown RBP13.41□□□□□ -0.26
CLIP1-219ENST00000620786 ZNF622Q969S3 477 aaKnown RBP eCLIP13.41□□□□□ -0.261e-6■■□□□ 14.2
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms