RNA–Protein interactions for RNA: ENST00000618500.4

SNCA-213, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 3,022 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-213ENST00000618500 JMYQ8N9B5 988 aa6.74□□□□□ -1.33
SNCA-213ENST00000618500 NCAPD2Q15021 1401 aa6.74□□□□□ -1.33
SNCA-213ENST00000618500 RGPD2P0DJD1 1756 aa6.74□□□□□ -1.33
SNCA-213ENST00000618500 ERBB3P21860 1342 aa6.74□□□□□ -1.33
SNCA-213ENST00000618500 CENPJQ9HC77 1338 aaPredicted RBP6.74□□□□□ -1.33
SNCA-213ENST00000618500 FLAD1Q8NFF5 587 aa6.74□□□□□ -1.33
SNCA-213ENST00000618500 USP35Q9P2H5 1018 aa6.74□□□□□ -1.33
SNCA-213ENST00000618500 KIF20BQ96Q89 1820 aa6.73□□□□□ -1.33
SNCA-213ENST00000618500 SRCAPQ6ZRS2 3230 aa6.73□□□□□ -1.33
SNCA-213ENST00000618500 TTC21BQ7Z4L5 1316 aa6.73□□□□□ -1.33
SNCA-213ENST00000618500 C4AP0C0L4 1744 aa6.73□□□□□ -1.33
SNCA-213ENST00000618500 EDC4Q6P2E9 1401 aaKnown RBP6.73□□□□□ -1.33
SNCA-213ENST00000618500 YBX3P16989 372 aaKnown RBP eCLIP6.73□□□□□ -1.33
SNCA-213ENST00000618500 PUS7Q96PZ0 661 aaKnown RBP6.73□□□□□ -1.33
SNCA-213ENST00000618500 AXIN2Q9Y2T1 843 aa6.73□□□□□ -1.33
SNCA-213ENST00000618500 CGNL1Q0VF96 1302 aa6.73□□□□□ -1.33
SNCA-213ENST00000618500 IL2RBP14784 551 aa6.73□□□□□ -1.33
SNCA-213ENST00000618500 CNKSR2Q8WXI2 1034 aa6.73□□□□□ -1.33
SNCA-213ENST00000618500 RAB3GAP2Q9H2M9 1393 aa6.73□□□□□ -1.33
SNCA-213ENST00000618500 LRRC4BQ9NT99 713 aa6.72□□□□□ -1.33
SNCA-213ENST00000618500 DNAJC5GQ8N7S2 189 aa6.72□□□□□ -1.33
SNCA-213ENST00000618500 EVC2Q86UK5 1308 aa6.71□□□□□ -1.33
SNCA-213ENST00000618500 KIF24Q5T7B8 1368 aa6.71□□□□□ -1.34
SNCA-213ENST00000618500 NRXN2Q9P2S2 1712 aa6.71□□□□□ -1.34
SNCA-213ENST00000618500 KIF3CO14782 793 aa6.71□□□□□ -1.34
SNCA-213ENST00000618500 PRELPP51888 382 aa6.71□□□□□ -1.34
SNCA-213ENST00000618500 NLRP6P59044 892 aa6.71□□□□□ -1.34
SNCA-213ENST00000618500 TIAM2Q8IVF5 1701 aa6.71□□□□□ -1.34
SNCA-213ENST00000618500 THSD7BQ9C0I4 1608 aa6.71□□□□□ -1.34
SNCA-213ENST00000618500 NLGN2Q8NFZ4 835 aa6.71□□□□□ -1.34
SNCA-213ENST00000618500 RBM46Q8TBY0 533 aaKnown RBP6.71□□□□□ -1.34
SNCA-213ENST00000618500 FSTL1Q12841 308 aa6.7□□□□□ -1.34
SNCA-213ENST00000618500 NUTM2GQ5VZR2 741 aa6.7□□□□□ -1.34
SNCA-213ENST00000618500 DCAF11Q8TEB1 546 aa6.7□□□□□ -1.34
SNCA-213ENST00000618500 GPBP1L1Q9HC44 474 aaPredicted RBP6.7□□□□□ -1.34
SNCA-213ENST00000618500 ARFGEF2Q9Y6D5 1785 aa6.7□□□□□ -1.34
SNCA-213ENST00000618500 SBF1O95248 1867 aa6.7□□□□□ -1.34
SNCA-213ENST00000618500 SLC34A2O95436 690 aa6.7□□□□□ -1.34
SNCA-213ENST00000618500 N4BP2Q86UW6 1770 aaPredicted RBP6.69□□□□□ -1.34
SNCA-213ENST00000618500 ZC3H4Q9UPT8 1303 aaKnown RBP6.69□□□□□ -1.34
SNCA-213ENST00000618500 ADAMTS7Q9UKP4 1686 aa6.69□□□□□ -1.34
SNCA-213ENST00000618500 PLEKHG5O94827 1062 aa6.69□□□□□ -1.34
SNCA-213ENST00000618500 VIRMAQ69YN4 1812 aaKnown RBP6.69□□□□□ -1.34
SNCA-213ENST00000618500 KDM6AO15550 1401 aaPredicted RBP6.69□□□□□ -1.34
SNCA-213ENST00000618500 KTN1Q86UP2 1357 aaKnown RBP6.68□□□□□ -1.34
SNCA-213ENST00000618500 MEGF6O75095 1541 aa6.68□□□□□ -1.34
SNCA-213ENST00000618500 DICER1Q9UPY3 1922 aaKnown RBP6.68□□□□□ -1.34
SNCA-213ENST00000618500 SMG6Q86US8 1419 aaKnown RBP6.68□□□□□ -1.34
SNCA-213ENST00000618500 TOMM70O94826 608 aa6.68□□□□□ -1.34
SNCA-213ENST00000618500 CABP1Q9NZU7 370 aa6.68□□□□□ -1.34
SNCA-213ENST00000618500 SRPK2P78362 688 aaKnown RBP6.67□□□□□ -1.34
SNCA-213ENST00000618500 MAP3K19Q56UN5 1328 aa6.67□□□□□ -1.34
SNCA-213ENST00000618500 KLRG1Q96E93 195 aa6.67□□□□□ -1.34
SNCA-213ENST00000618500 PCDH10Q9P2E7 1040 aa6.67□□□□□ -1.34
SNCA-213ENST00000618500 COL23A1Q86Y22 540 aaPredicted RBP6.66□□□□□ -1.34
SNCA-213ENST00000618500 IP6K1Q92551 441 aa6.66□□□□□ -1.34
SNCA-213ENST00000618500 CSB-PGBD3P0DP91 1061 aa6.66□□□□□ -1.34
SNCA-213ENST00000618500 ANKRD24Q8TF21 1146 aa6.66□□□□□ -1.34
SNCA-213ENST00000618500 CABP2Q9NPB3 220 aa6.66□□□□□ -1.34
SNCA-213ENST00000618500 USP47Q96K76 1375 aa6.66□□□□□ -1.34
SNCA-213ENST00000618500 SSFA2P28290 1259 aa6.66□□□□□ -1.34
SNCA-213ENST00000618500 TFCP2L1Q9NZI6 479 aa6.66□□□□□ -1.34
SNCA-213ENST00000618500 IGSF1Q8N6C5 1336 aa6.65□□□□□ -1.34
SNCA-213ENST00000618500 TJP1Q07157 1748 aa6.65□□□□□ -1.34
SNCA-213ENST00000618500 TGFB2P61812 414 aa6.65□□□□□ -1.34
SNCA-213ENST00000618500 KDRP35968 1356 aa6.64□□□□□ -1.35
SNCA-213ENST00000618500 SMARCC1Q92922 1105 aaPredicted RBP6.64□□□□□ -1.35
SNCA-213ENST00000618500 CCNL1Q9UK58 526 aaPredicted RBP6.64□□□□□ -1.35
SNCA-213ENST00000618500 ACSBG1Q96GR2 724 aa6.64□□□□□ -1.35
SNCA-213ENST00000618500 ADAMTSL1Q8N6G6 1762 aa6.63□□□□□ -1.35
SNCA-213ENST00000618500 NKX1-1Q15270 411 aaPredicted RBP6.63□□□□□ -1.35
SNCA-213ENST00000618500 PALLDQ8WX93 1383 aa6.63□□□□□ -1.35
SNCA-213ENST00000618500 PCDH11XQ9BZA7 1347 aa6.63□□□□□ -1.35
SNCA-213ENST00000618500 PCDH11YQ9BZA8 1340 aa6.63□□□□□ -1.35
SNCA-213ENST00000618500 KDM2AQ9Y2K7 1162 aa6.62□□□□□ -1.35
SNCA-213ENST00000618500 NBPF1Q3BBV0 1214 aa6.62□□□□□ -1.35
SNCA-213ENST00000618500 ZCRB1Q8TBF4 217 aaKnown RBP6.62□□□□□ -1.35
SNCA-213ENST00000618500 NLRP2Q9NX02 1062 aa6.62□□□□□ -1.35
SNCA-213ENST00000618500 INSRP06213 1382 aa6.61□□□□□ -1.35
SNCA-213ENST00000618500 SCN4AP35499 1836 aa6.61□□□□□ -1.35
SNCA-213ENST00000618500 A0A1W2PP64 1363 aa6.61□□□□□ -1.35
SNCA-213ENST00000618500 TONSLQ96HA7 1378 aa6.61□□□□□ -1.35
SNCA-213ENST00000618500 SLC24A1O60721 1099 aa6.61□□□□□ -1.35
SNCA-213ENST00000618500 PELP1Q8IZL8 1130 aaKnown RBP6.61□□□□□ -1.35
SNCA-213ENST00000618500 AFDNP55196 1824 aaKnown RBP6.61□□□□□ -1.35
SNCA-213ENST00000618500 FER1L6Q2WGJ9 1857 aa6.61□□□□□ -1.35
SNCA-213ENST00000618500 SCN7AQ01118 1682 aa6.61□□□□□ -1.35
SNCA-213ENST00000618500 KDM2BQ8NHM5 1336 aa6.6□□□□□ -1.35
SNCA-213ENST00000618500 ZBTB22O15209 634 aa6.6□□□□□ -1.35
SNCA-213ENST00000618500 HOXC9P31274 260 aa6.6□□□□□ -1.35
SNCA-213ENST00000618500 PRIM1P49642 420 aaKnown RBP6.6□□□□□ -1.35
SNCA-213ENST00000618500 UBR2Q8IWV8 1755 aa6.6□□□□□ -1.35
SNCA-213ENST00000618500 SCN11AQ9UI33 1791 aa6.6□□□□□ -1.35
SNCA-213ENST00000618500 HDGFL2Q7Z4V5 671 aaPredicted RBP6.6□□□□□ -1.35
SNCA-213ENST00000618500 SMC1BQ8NDV3 1235 aa6.6□□□□□ -1.35
SNCA-213ENST00000618500 DCAF5Q96JK2 942 aa6.6□□□□□ -1.35
SNCA-213ENST00000618500 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP6.6□□□□□ -1.35
SNCA-213ENST00000618500 KCPQ6ZWJ8 1503 aa6.59□□□□□ -1.35
SNCA-213ENST00000618500 RC3H1Q5TC82 1133 aaKnown RBP6.59□□□□□ -1.35
SNCA-213ENST00000618500 TNS4Q8IZW8 715 aa6.59□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms