RNA–Protein interactions for RNA: ENST00000617310.4

SMARCA1-205, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1, humanhuman

TSL 2

Gene SMARCA1, Length 4,291 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1-205ENST00000617310 METTL24Q5JXM2 366 aa12.24□□□□□ -0.45
SMARCA1-205ENST00000617310 A0A087WZG4 1122 aa12.24□□□□□ -0.45
SMARCA1-205ENST00000617310 ZSCAN29Q8IWY8 852 aaPredicted RBP12.24□□□□□ -0.45
SMARCA1-205ENST00000617310 BICD2Q8TD16 824 aa12.24□□□□□ -0.45
SMARCA1-205ENST00000617310 GNL3LQ9NVN8 582 aaKnown RBP12.23□□□□□ -0.45
SMARCA1-205ENST00000617310 FMNL2Q96PY5 1086 aa12.23□□□□□ -0.45
SMARCA1-205ENST00000617310 RAI14Q9P0K7 980 aa12.23□□□□□ -0.45
SMARCA1-205ENST00000617310 LRPPRCP42704 1394 aaKnown RBP12.23□□□□□ -0.45
SMARCA1-205ENST00000617310 GCP02774 474 aa12.23□□□□□ -0.45
SMARCA1-205ENST00000617310 RARSP54136 660 aaKnown RBP12.23□□□□□ -0.45
SMARCA1-205ENST00000617310 IGHMBP2P38935 993 aaKnown RBP12.22□□□□□ -0.45
SMARCA1-205ENST00000617310 ERC1Q8IUD2 1116 aa12.22□□□□□ -0.45
SMARCA1-205ENST00000617310 PI4KAP2A4QPH2 592 aa12.22□□□□□ -0.45
SMARCA1-205ENST00000617310 STK3Q13188 491 aa12.22□□□□□ -0.45
SMARCA1-205ENST00000617310 CSPP1Q1MSJ5 1256 aa12.22□□□□□ -0.45
SMARCA1-205ENST00000617310 PPIP5K1Q6PFW1 1433 aa12.22□□□□□ -0.45
SMARCA1-205ENST00000617310 LARP1Q6PKG0 1096 aaKnown RBP12.22□□□□□ -0.45
SMARCA1-205ENST00000617310 PI4KAP1Q8N8J0 262 aa12.22□□□□□ -0.45
SMARCA1-205ENST00000617310 LRP2BPQ9P2M1 347 aa12.22□□□□□ -0.45
SMARCA1-205ENST00000617310 CWC27Q6UX04 472 aaKnown RBP12.22□□□□□ -0.45
SMARCA1-205ENST00000617310 UBE3BQ7Z3V4 1068 aa12.22□□□□□ -0.45
SMARCA1-205ENST00000617310 FLIIQ13045 1269 aa12.21□□□□□ -0.45
SMARCA1-205ENST00000617310 GCC1Q96CN9 775 aa12.21□□□□□ -0.45
SMARCA1-205ENST00000617310 IFT57Q9NWB7 429 aa12.21□□□□□ -0.45
SMARCA1-205ENST00000617310 POLKQ9UBT6 870 aa12.21□□□□□ -0.45
SMARCA1-205ENST00000617310 ATP6V1DQ9Y5K8 247 aa12.21□□□□□ -0.45
SMARCA1-205ENST00000617310 LMTK3Q96Q04 1460 aa12.21□□□□□ -0.45
SMARCA1-205ENST00000617310 CCDC8Q9H0W5 538 aaPredicted RBP12.21□□□□□ -0.45
SMARCA1-205ENST00000617310 LRRFIP2Q9Y608 721 aaKnown RBP12.21□□□□□ -0.45
SMARCA1-205ENST00000617310 NINLQ9Y2I6 1382 aa12.21□□□□□ -0.45
SMARCA1-205ENST00000617310 DUOX2Q9NRD8 1548 aa12.21□□□□□ -0.46
SMARCA1-205ENST00000617310 EIF4A2Q14240 407 aaKnown RBP12.21□□□□□ -0.46
SMARCA1-205ENST00000617310 TPD52L1Q16890 204 aaPredicted RBP12.21□□□□□ -0.46
SMARCA1-205ENST00000617310 KRT24Q2M2I5 525 aa12.21□□□□□ -0.46
SMARCA1-205ENST00000617310 ZCRB1Q8TBF4 217 aaKnown RBP12.21□□□□□ -0.46
SMARCA1-205ENST00000617310 DNAAF4Q8WXU2 420 aa12.21□□□□□ -0.46
SMARCA1-205ENST00000617310 BOLA2Q9H3K6 86 aa12.21□□□□□ -0.46
SMARCA1-205ENST00000617310 DBF4Q9UBU7 674 aaPredicted RBP12.21□□□□□ -0.46
SMARCA1-205ENST00000617310 SHROOM2Q13796 1616 aa12.21□□□□□ -0.46
SMARCA1-205ENST00000617310 MBIPQ9NS73 344 aa12.2□□□□□ -0.46
SMARCA1-205ENST00000617310 GOLGA6L3A6NEY3 463 aa12.2□□□□□ -0.46
SMARCA1-205ENST00000617310 DDB1Q16531 1140 aa12.2□□□□□ -0.46
SMARCA1-205ENST00000617310 TESK2Q96S53 571 aa12.2□□□□□ -0.46
SMARCA1-205ENST00000617310 ZNF652Q9Y2D9 606 aa12.2□□□□□ -0.46
SMARCA1-205ENST00000617310 CHD1LQ86WJ1 897 aa12.2□□□□□ -0.46
SMARCA1-205ENST00000617310 PIBF1Q8WXW3 757 aa12.2□□□□□ -0.46
SMARCA1-205ENST00000617310 AK7Q96M32 723 aa12.2□□□□□ -0.46
SMARCA1-205ENST00000617310 ARID3AQ99856 593 aa12.2□□□□□ -0.46
SMARCA1-205ENST00000617310 CARD14Q9BXL6 1004 aa12.2□□□□□ -0.46
SMARCA1-205ENST00000617310 ANKIB1Q9P2G1 1089 aa12.2□□□□□ -0.46
SMARCA1-205ENST00000617310 BECN2A8MW95 431 aa12.19□□□□□ -0.46
SMARCA1-205ENST00000617310 CT47B1P0C2W7 299 aaPredicted RBP12.19□□□□□ -0.46
SMARCA1-205ENST00000617310 TBX22Q9Y458 520 aa12.19□□□□□ -0.46
SMARCA1-205ENST00000617310 LTKP29376 864 aa12.19□□□□□ -0.46
SMARCA1-205ENST00000617310 SAFBQ15424 915 aaKnown RBP eCLIP12.19□□□□□ -0.46
SMARCA1-205ENST00000617310 BTG4Q9NY30 223 aa12.19□□□□□ -0.46
SMARCA1-205ENST00000617310 TPM4P67936 248 aa12.19□□□□□ -0.46
SMARCA1-205ENST00000617310 CFAP65Q6ZU64 1925 aaKnown RBP12.19□□□□□ -0.46
SMARCA1-205ENST00000617310 TRIM27P14373 513 aa12.18□□□□□ -0.46
SMARCA1-205ENST00000617310 KIAA2012Q0VF49 1180 aa12.18□□□□□ -0.46
SMARCA1-205ENST00000617310 SNRKQ9NRH2 765 aa12.18□□□□□ -0.46
SMARCA1-205ENST00000617310 CEBPZQ03701 1054 aaKnown RBP12.18□□□□□ -0.46
SMARCA1-205ENST00000617310 SART3Q15020 963 aaKnown RBP12.18□□□□□ -0.46
SMARCA1-205ENST00000617310 MAP3K2Q9Y2U5 619 aa12.18□□□□□ -0.46
SMARCA1-205ENST00000617310 IFIT5Q13325 482 aaKnown RBP12.18□□□□□ -0.46
SMARCA1-205ENST00000617310 AAMPQ13685 434 aa12.18□□□□□ -0.46
SMARCA1-205ENST00000617310 NFATC2IPQ8NCF5 419 aa12.18□□□□□ -0.46
SMARCA1-205ENST00000617310 C6orf229H3BNL8 230 aa12.17□□□□□ -0.46
SMARCA1-205ENST00000617310 NUP133Q8WUM0 1156 aa12.17□□□□□ -0.46
SMARCA1-205ENST00000617310 CCDC43Q96MW1 224 aaKnown RBP12.17□□□□□ -0.46
SMARCA1-205ENST00000617310 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.17□□□□□ -0.46
SMARCA1-205ENST00000617310 CEP170Q5SW79 1584 aa12.17□□□□□ -0.46
SMARCA1-205ENST00000617310 TDO2P48775 406 aa12.17□□□□□ -0.46
SMARCA1-205ENST00000617310 TSHZ3Q63HK5 1081 aa12.17□□□□□ -0.46
SMARCA1-205ENST00000617310 MAP3K19Q56UN5 1328 aa12.17□□□□□ -0.46
SMARCA1-205ENST00000617310 CCAR1Q8IX12 1150 aaKnown RBP12.17□□□□□ -0.46
SMARCA1-205ENST00000617310 RPAP2Q8IXW5 612 aaPredicted RBP12.17□□□□□ -0.46
SMARCA1-205ENST00000617310 PHACTR3Q96KR7 559 aa12.17□□□□□ -0.46
SMARCA1-205ENST00000617310 EYA1Q99502 592 aa12.16□□□□□ -0.46
SMARCA1-205ENST00000617310 PRAG1Q86YV5 1406 aa12.16□□□□□ -0.46
SMARCA1-205ENST00000617310 YEATS2Q9ULM3 1422 aa12.16□□□□□ -0.46
SMARCA1-205ENST00000617310 MTHFSDQ2M296 383 aaKnown RBP12.16□□□□□ -0.46
SMARCA1-205ENST00000617310 COPS6Q7L5N1 327 aa12.16□□□□□ -0.46
SMARCA1-205ENST00000617310 CHPF2Q9P2E5 772 aa12.16□□□□□ -0.46
SMARCA1-205ENST00000617310 RFC4P35249 363 aa12.15□□□□□ -0.46
SMARCA1-205ENST00000617310 XAGE3Q8WTP9 111 aa12.15□□□□□ -0.46
SMARCA1-205ENST00000617310 UPF3BQ9BZI7 483 aaKnown RBP12.15□□□□□ -0.46
SMARCA1-205ENST00000617310 CHMP5Q9NZZ3 219 aa12.15□□□□□ -0.46
SMARCA1-205ENST00000617310 IQSEC3Q9UPP2 1182 aaPredicted RBP12.15□□□□□ -0.46
SMARCA1-205ENST00000617310 ANKRD36BQ8N2N9 1353 aa12.15□□□□□ -0.46
SMARCA1-205ENST00000617310 TTC21AQ8NDW8 1320 aa12.15□□□□□ -0.46
SMARCA1-205ENST00000617310 GOLGA6L19H0YKK7 550 aa12.15□□□□□ -0.46
SMARCA1-205ENST00000617310 PTMSP20962 102 aa12.15□□□□□ -0.46
SMARCA1-205ENST00000617310 PSMA5P28066 241 aa12.15□□□□□ -0.46
SMARCA1-205ENST00000617310 ATP6V1AP38606 617 aa12.15□□□□□ -0.46
SMARCA1-205ENST00000617310 LDHAL6AQ6ZMR3 332 aa12.15□□□□□ -0.46
SMARCA1-205ENST00000617310 ZNF622Q969S3 477 aaKnown RBP eCLIP12.15□□□□□ -0.46
SMARCA1-205ENST00000617310 NACAP1Q9BZK3 213 aa12.15□□□□□ -0.46
SMARCA1-205ENST00000617310 DDX11L8A8MPP1 907 aa12.14□□□□□ -0.47
SMARCA1-205ENST00000617310 SNRPA1P09661 255 aaKnown RBP12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms