RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 DISP3Q9P2K9 1392 aa16.6■□□□□ 0.25
CPSF1-212ENST00000616140 SERPINC1P01008 464 aa16.6■□□□□ 0.25
CPSF1-212ENST00000616140 CCDC57Q2TAC2 916 aa16.6■□□□□ 0.25
CPSF1-212ENST00000616140 FILIP1Q7Z7B0 1213 aa16.6■□□□□ 0.25
CPSF1-212ENST00000616140 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.6■□□□□ 0.252e-10■■■■■ 32.8
CPSF1-212ENST00000616140 NUP62CLQ9H1M0 184 aa16.6■□□□□ 0.25
CPSF1-212ENST00000616140 PPP6R1Q9UPN7 881 aa16.6■□□□□ 0.25
CPSF1-212ENST00000616140 IDI1Q13907 227 aa16.6■□□□□ 0.25
CPSF1-212ENST00000616140 RUFY1Q96T51 708 aa16.6■□□□□ 0.25
CPSF1-212ENST00000616140 GLRX3O76003 335 aaKnown RBP16.6■□□□□ 0.25
CPSF1-212ENST00000616140 TOM1L2Q6ZVM7 507 aa16.6■□□□□ 0.25
CPSF1-212ENST00000616140 ZSCAN30Q86W11 494 aa16.59■□□□□ 0.25
CPSF1-212ENST00000616140 ZC3H6P61129 1189 aaKnown RBP16.59■□□□□ 0.25
CPSF1-212ENST00000616140 FILIP1LQ4L180 1135 aa16.59■□□□□ 0.25
CPSF1-212ENST00000616140 DDX11Q96FC9 970 aa16.59■□□□□ 0.25
CPSF1-212ENST00000616140 ACBD3Q9H3P7 528 aa16.59■□□□□ 0.25
CPSF1-212ENST00000616140 SSFA2P28290 1259 aa16.59■□□□□ 0.25
CPSF1-212ENST00000616140 TRIM22Q8IYM9 498 aa16.59■□□□□ 0.25
CPSF1-212ENST00000616140 SPG7Q9UQ90 795 aa16.59■□□□□ 0.25
CPSF1-212ENST00000616140 CTDP1Q9Y5B0 961 aaPredicted RBP16.59■□□□□ 0.25
CPSF1-212ENST00000616140 SETQ01105 290 aaPredicted RBP16.58■□□□□ 0.25
CPSF1-212ENST00000616140 CCDC43Q96MW1 224 aaKnown RBP16.58■□□□□ 0.25
CPSF1-212ENST00000616140 CFAP45Q9UL16 551 aa16.58■□□□□ 0.25
CPSF1-212ENST00000616140 KRT32Q14532 448 aa16.58■□□□□ 0.24
CPSF1-212ENST00000616140 CCDC83Q8IWF9 413 aa16.58■□□□□ 0.24
CPSF1-212ENST00000616140 CCDC112Q8NEF3 446 aa16.58■□□□□ 0.24
CPSF1-212ENST00000616140 TNPO1Q92973 898 aaKnown RBP16.58■□□□□ 0.24
CPSF1-212ENST00000616140 CCDC85AQ96PX6 553 aaPredicted RBP16.58■□□□□ 0.24
CPSF1-212ENST00000616140 PRDM11Q9NQV5 511 aa16.57■□□□□ 0.24
CPSF1-212ENST00000616140 PRPF40BQ6NWY9 871 aaKnown RBP16.57■□□□□ 0.24
CPSF1-212ENST00000616140 TXLNAP40222 546 aa16.56■□□□□ 0.24
CPSF1-212ENST00000616140 NACAP1Q9BZK3 213 aa16.56■□□□□ 0.24
CPSF1-212ENST00000616140 TAF7Q15545 349 aaPredicted RBP16.56■□□□□ 0.24
CPSF1-212ENST00000616140 CAGE1Q8TC20 777 aa16.56■□□□□ 0.24
CPSF1-212ENST00000616140 PTPRKQ15262 1439 aa16.56■□□□□ 0.24
CPSF1-212ENST00000616140 CEP57L1Q8IYX8 460 aa16.56■□□□□ 0.24
CPSF1-212ENST00000616140 UQCRHLA0A096LP55 91 aa16.55■□□□□ 0.24
CPSF1-212ENST00000616140 UQCRHP07919 91 aa16.55■□□□□ 0.24
CPSF1-212ENST00000616140 BMP2KLQ5H9B9 411 aa16.55■□□□□ 0.24
CPSF1-212ENST00000616140 BOLA2Q9H3K6 86 aa16.55■□□□□ 0.24
CPSF1-212ENST00000616140 MPHOSPH8Q99549 860 aa16.55■□□□□ 0.24
CPSF1-212ENST00000616140 TBC1D9Q6ZT07 1266 aa16.55■□□□□ 0.24
CPSF1-212ENST00000616140 NUP133Q8WUM0 1156 aa16.55■□□□□ 0.24
CPSF1-212ENST00000616140 TBC1D32Q96NH3 1257 aa16.55■□□□□ 0.24
CPSF1-212ENST00000616140 EPS15P42566 896 aa16.55■□□□□ 0.24
CPSF1-212ENST00000616140 PCDHB15Q9Y5E8 787 aa16.55■□□□□ 0.24
CPSF1-212ENST00000616140 LRRFIP2Q9Y608 721 aaKnown RBP16.55■□□□□ 0.24
CPSF1-212ENST00000616140 SCAF11Q99590 1463 aaKnown RBP16.54■□□□□ 0.24
CPSF1-212ENST00000616140 MAP3K11Q16584 847 aa16.54■□□□□ 0.24
CPSF1-212ENST00000616140 FAM177A1Q8N128 213 aaPredicted RBP16.54■□□□□ 0.24
CPSF1-212ENST00000616140 CTNNA3Q9UI47 895 aa16.54■□□□□ 0.24
CPSF1-212ENST00000616140 SMARCE1Q969G3 411 aa16.54■□□□□ 0.24
CPSF1-212ENST00000616140 AK7Q96M32 723 aa16.54■□□□□ 0.24
CPSF1-212ENST00000616140 CCP110O43303 1012 aa16.54■□□□□ 0.24
CPSF1-212ENST00000616140 FBXO31Q5XUX0 539 aaPredicted RBP16.54■□□□□ 0.24
CPSF1-212ENST00000616140 IKQ13123 557 aaPredicted RBP16.53■□□□□ 0.24
CPSF1-212ENST00000616140 ANKLE2Q86XL3 938 aa16.53■□□□□ 0.24
CPSF1-212ENST00000616140 USHBP1Q8N6Y0 703 aa16.53■□□□□ 0.24
CPSF1-212ENST00000616140 PATL2C9JE40 543 aaKnown RBP16.53■□□□□ 0.24
CPSF1-212ENST00000616140 RAB11FIP3O75154 756 aa16.53■□□□□ 0.24
CPSF1-212ENST00000616140 CAMK4Q16566 473 aa16.53■□□□□ 0.24
CPSF1-212ENST00000616140 SLC3A2P08195 630 aaKnown RBP16.53■□□□□ 0.24
CPSF1-212ENST00000616140 GNL3LQ9NVN8 582 aaKnown RBP16.53■□□□□ 0.24
CPSF1-212ENST00000616140 MAPKBP1O60336 1514 aa16.52■□□□□ 0.24
CPSF1-212ENST00000616140 FBLN1P23142 703 aa16.52■□□□□ 0.24
CPSF1-212ENST00000616140 FAM83GA6ND36 823 aa16.52■□□□□ 0.24
CPSF1-212ENST00000616140 CCDC69A6NI79 296 aa16.52■□□□□ 0.24
CPSF1-212ENST00000616140 IDH1O75874 414 aaKnown RBP16.52■□□□□ 0.24
CPSF1-212ENST00000616140 PDIA4P13667 645 aaKnown RBP16.52■□□□□ 0.24
CPSF1-212ENST00000616140 PRM3Q9NNZ6 103 aa16.52■□□□□ 0.24
CPSF1-212ENST00000616140 WASLO00401 505 aaPredicted RBP16.52■□□□□ 0.23
CPSF1-212ENST00000616140 PTCD1O75127 700 aaKnown RBP16.52■□□□□ 0.23
CPSF1-212ENST00000616140 FLIIQ13045 1269 aa16.52■□□□□ 0.23
CPSF1-212ENST00000616140 CT47A1Q5JQC4 288 aaPredicted RBP16.52■□□□□ 0.23
CPSF1-212ENST00000616140 GDPD2Q9HCC8 539 aa16.51■□□□□ 0.23
CPSF1-212ENST00000616140 LARP6Q9BRS8 491 aaKnown RBP16.51■□□□□ 0.23
CPSF1-212ENST00000616140 C14orf93Q9H972 538 aaKnown RBP16.51■□□□□ 0.23
CPSF1-212ENST00000616140 ZSCAN25Q6NSZ9 544 aa16.51■□□□□ 0.23
CPSF1-212ENST00000616140 CCDC8Q9H0W5 538 aaPredicted RBP16.51■□□□□ 0.23
CPSF1-212ENST00000616140 MAGEC2Q9UBF1 373 aaPredicted RBP16.51■□□□□ 0.23
CPSF1-212ENST00000616140 PIP4K2AP48426 406 aaPredicted RBP16.51■□□□□ 0.23
CPSF1-212ENST00000616140 PPFIBP1Q86W92 1011 aa16.51■□□□□ 0.23
CPSF1-212ENST00000616140 CDK5RAP3Q96JB5 506 aa16.51■□□□□ 0.23
CPSF1-212ENST00000616140 NOS1P29475 1434 aa16.5■□□□□ 0.23
CPSF1-212ENST00000616140 LARP1Q6PKG0 1096 aaKnown RBP16.5■□□□□ 0.23
CPSF1-212ENST00000616140 KCNH5Q8NCM2 988 aa16.5■□□□□ 0.23
CPSF1-212ENST00000616140 DNAAF4Q8WXU2 420 aa16.5■□□□□ 0.23
CPSF1-212ENST00000616140 MBIPQ9NS73 344 aa16.5■□□□□ 0.23
CPSF1-212ENST00000616140 CDKL5O76039 1030 aa16.49■□□□□ 0.23
CPSF1-212ENST00000616140 TDO2P48775 406 aa16.49■□□□□ 0.23
CPSF1-212ENST00000616140 SPINK5Q9NQ38 1064 aaPredicted RBP16.49■□□□□ 0.23
CPSF1-212ENST00000616140 CDR1P51861 262 aa16.49■□□□□ 0.23
CPSF1-212ENST00000616140 SCAND2PQ9GZW5 306 aaPredicted RBP16.49■□□□□ 0.23
CPSF1-212ENST00000616140 TSHZ3Q63HK5 1081 aa16.49■□□□□ 0.23
CPSF1-212ENST00000616140 ERCC4Q92889 916 aaPredicted RBP16.49■□□□□ 0.23
CPSF1-212ENST00000616140 MPRIPQ6WCQ1 1025 aa16.49■□□□□ 0.23
CPSF1-212ENST00000616140 UBAC1Q9BSL1 405 aa16.49■□□□□ 0.23
CPSF1-212ENST00000616140 LIMCH1Q9UPQ0 1083 aa16.49■□□□□ 0.23
CPSF1-212ENST00000616140 GRIN2AQ12879 1464 aa16.48■□□□□ 0.23
CPSF1-212ENST00000616140 CD109Q6YHK3 1445 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms