RNA–Protein interactions for RNA: ENST00000615442.1

PVT1-223, Transcript of Pvt1 oncogene, human

Gene PVT1, Length 165 nt, Biotype misc RNA, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PVT1-223	ENST00000615442	PNN	Q9H307	717 aa	Known RBP	14.01	□□□□□ -0.17
PVT1-223	ENST00000615442	SPG7	Q9UQ90	795 aa		14.01	□□□□□ -0.17
PVT1-223	ENST00000615442	RGPD1	P0DJD0	1748 aa		14.01	□□□□□ -0.17
PVT1-223	ENST00000615442	MEGF6	O75095	1541 aa		14	□□□□□ -0.17
PVT1-223	ENST00000615442	PLEKHO1	Q53GL0	409 aa	Predicted RBP	14	□□□□□ -0.17
PVT1-223	ENST00000615442	CCER2	I3L3R5	266 aa		13.99	□□□□□ -0.17
PVT1-223	ENST00000615442	WDR43	Q15061	677 aa	Known RBP eCLIP	13.99	□□□□□ -0.17
PVT1-223	ENST00000615442	CCDC184	Q52MB2	194 aa		13.99	□□□□□ -0.17
PVT1-223	ENST00000615442	RSPH6A	Q9H0K4	717 aa		13.99	□□□□□ -0.17
PVT1-223	ENST00000615442	MRS2	Q9HD23	443 aa		13.99	□□□□□ -0.17
PVT1-223	ENST00000615442	RGPD2	P0DJD1	1756 aa		13.99	□□□□□ -0.17
PVT1-223	ENST00000615442	ILDR2	Q71H61	639 aa		13.98	□□□□□ -0.17
PVT1-223	ENST00000615442	MARCH10	Q8NA82	808 aa	Predicted RBP	13.98	□□□□□ -0.17
PVT1-223	ENST00000615442	PARP4	Q9UKK3	1724 aa	Known RBP	13.98	□□□□□ -0.17
PVT1-223	ENST00000615442	TNS2	Q63HR2	1409 aa		13.98	□□□□□ -0.17
PVT1-223	ENST00000615442	PCDH11X	Q9BZA7	1347 aa		13.97	□□□□□ -0.17
PVT1-223	ENST00000615442	PCDH11Y	Q9BZA8	1340 aa		13.97	□□□□□ -0.17
PVT1-223	ENST00000615442	PRKAR2B	P31323	418 aa		13.97	□□□□□ -0.17
PVT1-223	ENST00000615442	FAM196A	Q6ZSG2	479 aa		13.97	□□□□□ -0.17
PVT1-223	ENST00000615442	DDX54	Q8TDD1	881 aa	Known RBP	13.97	□□□□□ -0.17
PVT1-223	ENST00000615442	PNISR	Q8TF01	805 aa	Known RBP	13.97	□□□□□ -0.17
PVT1-223	ENST00000615442	MIER1	Q8N108	512 aa		13.96	□□□□□ -0.17
PVT1-223	ENST00000615442	ADAMTS8	Q9UP79	889 aa		13.96	□□□□□ -0.17
PVT1-223	ENST00000615442	WNK3	Q9BYP7	1800 aa		13.95	□□□□□ -0.18
PVT1-223	ENST00000615442	LRRC37A3	O60309	1634 aa		13.95	□□□□□ -0.18
PVT1-223	ENST00000615442	NEFM	P07197	916 aa		13.95	□□□□□ -0.18
PVT1-223	ENST00000615442	IFNL2	Q8IZJ0	200 aa		13.95	□□□□□ -0.18
PVT1-223	ENST00000615442	PLEKHF1	Q96S99	279 aa		13.95	□□□□□ -0.18
PVT1-223	ENST00000615442	BCL9	O00512	1426 aa		13.95	□□□□□ -0.18
PVT1-223	ENST00000615442	CYP27B1	O15528	508 aa		13.94	□□□□□ -0.18
PVT1-223	ENST00000615442	PHKG2	P15735	406 aa		13.94	□□□□□ -0.18
PVT1-223	ENST00000615442	NKX1-1	Q15270	411 aa	Predicted RBP	13.94	□□□□□ -0.18
PVT1-223	ENST00000615442	MTHFSD	Q2M296	383 aa	Known RBP	13.94	□□□□□ -0.18
PVT1-223	ENST00000615442	GAS2L2	Q8NHY3	880 aa		13.94	□□□□□ -0.18
PVT1-223	ENST00000615442	PHACTR3	Q96KR7	559 aa		13.94	□□□□□ -0.18
PVT1-223	ENST00000615442	HSP90AB1	P08238	724 aa	Known RBP	13.93	□□□□□ -0.18
PVT1-223	ENST00000615442	C1orf141	Q5JVX7	400 aa		13.93	□□□□□ -0.18
PVT1-223	ENST00000615442	FAM182B	Q5T319	152 aa		13.93	□□□□□ -0.18
PVT1-223	ENST00000615442	ZNF530	Q6P9A1	599 aa	Predicted RBP	13.93	□□□□□ -0.18
PVT1-223	ENST00000615442	AKAP4	Q5JQC9	854 aa		13.92	□□□□□ -0.18
PVT1-223	ENST00000615442	RUNDC1	Q96C34	613 aa		13.92	□□□□□ -0.18
PVT1-223	ENST00000615442	MAPK8IP3	Q9UPT6	1336 aa		13.91	□□□□□ -0.18
PVT1-223	ENST00000615442	DCAF5	Q96JK2	942 aa		13.91	□□□□□ -0.18
PVT1-223	ENST00000615442	PKD1L3	Q7Z443	1732 aa		13.9	□□□□□ -0.18
PVT1-223	ENST00000615442	CCDC125	Q86Z20	511 aa		13.9	□□□□□ -0.18
PVT1-223	ENST00000615442	BRWD3	Q6RI45	1802 aa		13.9	□□□□□ -0.18
PVT1-223	ENST00000615442	GNAT3	A8MTJ3	354 aa		13.89	□□□□□ -0.19
PVT1-223	ENST00000615442	HTATSF1	O43719	755 aa	Known RBP	13.89	□□□□□ -0.19
PVT1-223	ENST00000615442	CCDC146	Q8IYE0	955 aa		13.89	□□□□□ -0.19
PVT1-223	ENST00000615442	NFE2L2	Q16236	605 aa		13.88	□□□□□ -0.19
PVT1-223	ENST00000615442	FAM9B	Q8IZU0	186 aa		13.88	□□□□□ -0.19
PVT1-223	ENST00000615442	BCL11B	Q9C0K0	894 aa	Predicted RBP	13.88	□□□□□ -0.19
PVT1-223	ENST00000615442	ERVV-2	B6SEH9	535 aa		13.87	□□□□□ -0.19
PVT1-223	ENST00000615442	MPRIP	Q6WCQ1	1025 aa		13.87	□□□□□ -0.19
PVT1-223	ENST00000615442	MAP3K5	Q99683	1374 aa		13.86	□□□□□ -0.19
PVT1-223	ENST00000615442	TRIM37	O94972	964 aa		13.86	□□□□□ -0.19
PVT1-223	ENST00000615442	TMPO	P42166	694 aa	Known RBP	13.86	□□□□□ -0.19
PVT1-223	ENST00000615442	PRIM1	P49642	420 aa	Known RBP	13.86	□□□□□ -0.19
PVT1-223	ENST00000615442	RTF1	Q92541	710 aa	Known RBP	13.86	□□□□□ -0.19
PVT1-223	ENST00000615442	ACSBG1	Q96GR2	724 aa		13.86	□□□□□ -0.19
PVT1-223	ENST00000615442	SHANK3	Q9BYB0	1731 aa		13.86	□□□□□ -0.19
PVT1-223	ENST00000615442	RNMT	O43148	476 aa	Known RBP	13.85	□□□□□ -0.19
PVT1-223	ENST00000615442	KCNQ2	O43526	872 aa		13.85	□□□□□ -0.19
PVT1-223	ENST00000615442	RIPK4	P57078	832 aa		13.85	□□□□□ -0.19
PVT1-223	ENST00000615442	SF3B2	Q13435	895 aa	Known RBP	13.85	□□□□□ -0.19
PVT1-223	ENST00000615442	UPF1	Q92900	1129 aa	Known RBP eCLIP	13.85	□□□□□ -0.19
PVT1-223	ENST00000615442	LGR6	Q9HBX8	967 aa		13.85	□□□□□ -0.19
PVT1-223	ENST00000615442	APAF1	O14727	1248 aa		13.84	□□□□□ -0.19
PVT1-223	ENST00000615442	CABP4	P57796	275 aa		13.84	□□□□□ -0.19
PVT1-223	ENST00000615442	LMOD3	Q0VAK6	560 aa		13.84	□□□□□ -0.19
PVT1-223	ENST00000615442	NCBP3	Q53F19	620 aa	Known RBP	13.84	□□□□□ -0.19
PVT1-223	ENST00000615442	IL17RE	Q8NFR9	667 aa		13.84	□□□□□ -0.19
PVT1-223	ENST00000615442	SYTL4	Q96C24	671 aa	Predicted RBP	13.84	□□□□□ -0.19
PVT1-223	ENST00000615442	KDM6A	O15550	1401 aa	Predicted RBP	13.83	□□□□□ -0.2
PVT1-223	ENST00000615442	TMOD3	Q9NYL9	352 aa		13.83	□□□□□ -0.2
PVT1-223	ENST00000615442	APBA3	O96018	575 aa		13.82	□□□□□ -0.2
PVT1-223	ENST00000615442	PTF1A	Q7RTS3	328 aa		13.82	□□□□□ -0.2
PVT1-223	ENST00000615442	NFATC2IP	Q8NCF5	419 aa		13.82	□□□□□ -0.2
PVT1-223	ENST00000615442	PIGB	Q92521	554 aa		13.82	□□□□□ -0.2
PVT1-223	ENST00000615442	SLC52A2	Q9HAB3	445 aa		13.82	□□□□□ -0.2
PVT1-223	ENST00000615442	CEMIP	Q8WUJ3	1361 aa		13.82	□□□□□ -0.2
PVT1-223	ENST00000615442	SOCS7	O14512	581 aa		13.81	□□□□□ -0.2
PVT1-223	ENST00000615442	PLSCR1	O15162	318 aa		13.81	□□□□□ -0.2
PVT1-223	ENST00000615442	TEF	Q10587	303 aa		13.81	□□□□□ -0.2
PVT1-223	ENST00000615442	NEUROD2	Q15784	382 aa		13.81	□□□□□ -0.2
PVT1-223	ENST00000615442	MCM10	Q7L590	875 aa		13.81	□□□□□ -0.2
PVT1-223	ENST00000615442	NGEF	Q8N5V2	710 aa		13.81	□□□□□ -0.2
PVT1-223	ENST00000615442	RRP7A	Q9Y3A4	280 aa	Known RBP	13.81	□□□□□ -0.2
PVT1-223	ENST00000615442	BAG6	P46379	1132 aa		13.8	□□□□□ -0.2
PVT1-223	ENST00000615442	CCDC27	Q2M243	656 aa		13.8	□□□□□ -0.2
PVT1-223	ENST00000615442	TRIM35	Q9UPQ4	493 aa		13.8	□□□□□ -0.2
PVT1-223	ENST00000615442	DCTN1	Q14203	1278 aa		13.79	□□□□□ -0.2
PVT1-223	ENST00000615442	SMARCC1	Q92922	1105 aa	Predicted RBP	13.79	□□□□□ -0.2
PVT1-223	ENST00000615442	NHS	Q6T4R5	1651 aa		13.79	□□□□□ -0.2
PVT1-223	ENST00000615442	ADAMTS7	Q9UKP4	1686 aa		13.79	□□□□□ -0.2
PVT1-223	ENST00000615442	MRC1	P22897	1456 aa		13.77	□□□□□ -0.21
PVT1-223	ENST00000615442	TAF7	Q15545	349 aa	Predicted RBP	13.77	□□□□□ -0.21
PVT1-223	ENST00000615442	DOT1L	Q8TEK3	1739 aa		13.77	□□□□□ -0.21
PVT1-223	ENST00000615442	CAMKK2	Q96RR4	588 aa		13.77	□□□□□ -0.21
PVT1-223	ENST00000615442	ATG3	Q9NT62	314 aa		13.77	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 15 ms