RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 MX1P20591 662 aa15.21■□□□□ 0.03
LIG1-221ENST00000613670 ZRSR1Q15695 479 aaKnown RBP15.21■□□□□ 0.03
LIG1-221ENST00000613670 CCDC9Q9Y3X0 531 aaKnown RBP15.21■□□□□ 0.03
LIG1-221ENST00000613670 PPIP5K1Q6PFW1 1433 aa15.21■□□□□ 0.03
LIG1-221ENST00000613670 CEP85Q6P2H3 762 aa15.21■□□□□ 0.03
LIG1-221ENST00000613670 CDC42BPBQ9Y5S2 1711 aa15.21■□□□□ 0.03
LIG1-221ENST00000613670 CCT4P50991 539 aaKnown RBP15.21■□□□□ 0.02
LIG1-221ENST00000613670 LMBRD1Q9NUN5 540 aa15.21■□□□□ 0.02
LIG1-221ENST00000613670 CCDC61Q9Y6R9 512 aa15.21■□□□□ 0.02
LIG1-221ENST00000613670 LRSAM1Q6UWE0 723 aa15.2■□□□□ 0.02
LIG1-221ENST00000613670 MAP7D2Q96T17 732 aa15.2■□□□□ 0.02
LIG1-221ENST00000613670 ZNF692Q9BU19 519 aaPredicted RBP15.2■□□□□ 0.02
LIG1-221ENST00000613670 WDR33Q9C0J8 1336 aaKnown RBP15.2■□□□□ 0.02
LIG1-221ENST00000613670 UNC13BO14795 1591 aa15.2■□□□□ 0.02
LIG1-221ENST00000613670 GOLGA6L6A8MZA4 724 aa15.2■□□□□ 0.02
LIG1-221ENST00000613670 PDE1AP54750 535 aa15.2■□□□□ 0.02
LIG1-221ENST00000613670 MADDQ8WXG6 1647 aa15.19■□□□□ 0.02
LIG1-221ENST00000613670 CLASP1Q7Z460 1538 aa15.19■□□□□ 0.02
LIG1-221ENST00000613670 CWC27Q6UX04 472 aaKnown RBP15.19■□□□□ 0.02
LIG1-221ENST00000613670 ZNF592Q92610 1267 aa15.19■□□□□ 0.02
LIG1-221ENST00000613670 CD109Q6YHK3 1445 aa15.18■□□□□ 0.02
LIG1-221ENST00000613670 PUS7Q96PZ0 661 aaKnown RBP15.18■□□□□ 0.02
LIG1-221ENST00000613670 ZKSCAN5Q9Y2L8 839 aa15.18■□□□□ 0.02
LIG1-221ENST00000613670 ATP7AQ04656 1500 aa15.18■□□□□ 0.02
LIG1-221ENST00000613670 CLTCL1P53675 1640 aa15.18■□□□□ 0.02
LIG1-221ENST00000613670 CCDC30Q5VVM6 783 aa15.18■□□□□ 0.02
LIG1-221ENST00000613670 HSP90B1P14625 803 aaKnown RBP15.17■□□□□ 0.02
LIG1-221ENST00000613670 HSP90AB2PQ58FF8 381 aa15.17■□□□□ 0.02
LIG1-221ENST00000613670 TMEM63CQ9P1W3 806 aa15.17■□□□□ 0.02
LIG1-221ENST00000613670 MYO5CQ9NQX4 1742 aa15.17■□□□□ 0.02
LIG1-221ENST00000613670 C9orf78Q9NZ63 289 aaPredicted RBP15.17■□□□□ 0.02
LIG1-221ENST00000613670 LRRFIP2Q9Y608 721 aaKnown RBP15.17■□□□□ 0.02
LIG1-221ENST00000613670 FOSBP53539 338 aa15.17■□□□□ 0.02
LIG1-221ENST00000613670 KIF2CQ99661 725 aa15.17■□□□□ 0.02
LIG1-221ENST00000613670 HCLS1P14317 486 aaPredicted RBP15.16■□□□□ 0.02
LIG1-221ENST00000613670 ZKSCAN1P17029 563 aaPredicted RBP15.16■□□□□ 0.02
LIG1-221ENST00000613670 FERMT3Q86UX7 667 aa15.16■□□□□ 0.02
LIG1-221ENST00000613670 GPATCH3Q96I76 525 aa15.16■□□□□ 0.02
LIG1-221ENST00000613670 IFIT2P09913 472 aaKnown RBP15.16■□□□□ 0.02
LIG1-221ENST00000613670 CYB5RLQ6IPT4 315 aa15.16■□□□□ 0.02
LIG1-221ENST00000613670 WASLO00401 505 aaPredicted RBP15.16■□□□□ 0.02
LIG1-221ENST00000613670 SRGAP3O43295 1099 aa15.16■□□□□ 0.02
LIG1-221ENST00000613670 HDGFL1Q5TGJ6 251 aa15.16■□□□□ 0.02
LIG1-221ENST00000613670 G2E3Q7L622 706 aa15.16■□□□□ 0.02
LIG1-221ENST00000613670 ZSCAN21Q9Y5A6 473 aaPredicted RBP15.16■□□□□ 0.02
LIG1-221ENST00000613670 FOXO3O43524 673 aa15.15■□□□□ 0.02
LIG1-221ENST00000613670 ZNF445P59923 1031 aa15.15■□□□□ 0.02
LIG1-221ENST00000613670 FBXW7Q969H0 707 aa15.15■□□□□ 0.02
LIG1-221ENST00000613670 TTC12Q9H892 705 aaPredicted RBP15.15■□□□□ 0.02
LIG1-221ENST00000613670 NLRP6P59044 892 aa15.15■□□□□ 0.02
LIG1-221ENST00000613670 SASS6Q6UVJ0 657 aa15.15■□□□□ 0.02
LIG1-221ENST00000613670 BICD2Q8TD16 824 aa15.15■□□□□ 0.02
LIG1-221ENST00000613670 NPATQ14207 1427 aa15.15■□□□□ 0.02
LIG1-221ENST00000613670 CNTROBQ8N137 903 aa15.14■□□□□ 0.01
LIG1-221ENST00000613670 RUFY2Q8WXA3 655 aa15.14■□□□□ 0.01
LIG1-221ENST00000613670 PPP1R9BQ96SB3 815 aa15.14■□□□□ 0.01
LIG1-221ENST00000613670 ESYT1Q9BSJ8 1104 aa15.14■□□□□ 0.01
LIG1-221ENST00000613670 SPG7Q9UQ90 795 aa15.14■□□□□ 0.01
LIG1-221ENST00000613670 FAM177BA6PVY3 158 aa15.14■□□□□ 0.01
LIG1-221ENST00000613670 NCBP3Q53F19 620 aaKnown RBP15.14■□□□□ 0.01
LIG1-221ENST00000613670 CCDC83Q8IWF9 413 aa15.14■□□□□ 0.01
LIG1-221ENST00000613670 GPT2Q8TD30 523 aa15.14■□□□□ 0.01
LIG1-221ENST00000613670 IL13P35225 146 aa15.14■□□□□ 0.01
LIG1-221ENST00000613670 USP48Q86UV5 1035 aa15.14■□□□□ 0.01
LIG1-221ENST00000613670 NLRP1Q9C000 1473 aa15.13■□□□□ 0.01
LIG1-221ENST00000613670 LAMC1P11047 1609 aa15.13■□□□□ 0.01
LIG1-221ENST00000613670 NOL7Q9UMY1 257 aaKnown RBP15.13■□□□□ 0.01
LIG1-221ENST00000613670 TEFQ10587 303 aa15.13■□□□□ 0.01
LIG1-221ENST00000613670 MSH6P52701 1360 aa15.13■□□□□ 0.01
LIG1-221ENST00000613670 ABCC4O15439 1325 aa15.13■□□□□ 0.01
LIG1-221ENST00000613670 ERCC6L2Q5T890 1561 aa15.13■□□□□ 0.01
LIG1-221ENST00000613670 ADCY5O95622 1261 aa15.13■□□□□ 0.01
LIG1-221ENST00000613670 CASTP20810 708 aaKnown RBP15.12■□□□□ 0.01
LIG1-221ENST00000613670 MTERF4Q7Z6M4 381 aaKnown RBP15.12■□□□□ 0.01
LIG1-221ENST00000613670 JAKMIP1Q96N16 626 aaKnown RBP15.12■□□□□ 0.01
LIG1-221ENST00000613670 CNPY2Q9Y2B0 182 aa15.12■□□□□ 0.01
LIG1-221ENST00000613670 ABCC1P33527 1531 aa15.12■□□□□ 0.01
LIG1-221ENST00000613670 FLIIQ13045 1269 aa15.12■□□□□ 0.01
LIG1-221ENST00000613670 EIF4A2Q14240 407 aaKnown RBP15.12■□□□□ 0.01
LIG1-221ENST00000613670 CAMK4Q16566 473 aa15.12■□□□□ 0.01
LIG1-221ENST00000613670 OSCARQ8IYS5 282 aa15.12■□□□□ 0.01
LIG1-221ENST00000613670 CLASRPQ8N2M8 674 aaKnown RBP15.12■□□□□ 0.01
LIG1-221ENST00000613670 PLXNC1O60486 1568 aa15.12■□□□□ 0.01
LIG1-221ENST00000613670 PTPRCP08575 1304 aa15.12■□□□□ 0.01
LIG1-221ENST00000613670 ASXL2Q76L83 1435 aa15.12■□□□□ 0.01
LIG1-221ENST00000613670 H3BQV1 296 aa15.12■□□□□ 0.01
LIG1-221ENST00000613670 STK3Q13188 491 aa15.12■□□□□ 0.01
LIG1-221ENST00000613670 IFFO2Q5TF58 517 aa15.12■□□□□ 0.01
LIG1-221ENST00000613670 GIMAP6Q6P9H5 292 aa15.12■□□□□ 0.01
LIG1-221ENST00000613670 C17orf53Q8N3J3 647 aaPredicted RBP15.11■□□□□ 0.01
LIG1-221ENST00000613670 CBX1P83916 185 aa15.11■□□□□ 0.01
LIG1-221ENST00000613670 TRIM5Q9C035 493 aa15.11■□□□□ 0.01
LIG1-221ENST00000613670 NSFL1CQ9UNZ2 370 aaKnown RBP15.11■□□□□ 0.01
LIG1-221ENST00000613670 MYOM2P54296 1465 aa15.11■□□□□ 0.01
LIG1-221ENST00000613670 HMGN5P82970 282 aaKnown RBP15.11■□□□□ 0.01
LIG1-221ENST00000613670 TSC1Q92574 1164 aa15.11■□□□□ 0.01
LIG1-221ENST00000613670 SLC26A8Q96RN1 970 aa15.11■□□□□ 0.01
LIG1-221ENST00000613670 GADD45BO75293 160 aaPredicted RBP15.11■□□□□ 0.01
LIG1-221ENST00000613670 AIMP1Q12904 312 aaKnown RBP15.11■□□□□ 0.01
LIG1-221ENST00000613670 SRCIN1Q9C0H9 1055 aa15.11■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms