RNA–Protein interactions for RNA: ENST00000611107.1

SNCA-212, Transcript of synuclein alpha, humanhuman

TSL 5 BASIC

Gene SNCA, Length 297 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-212ENST00000611107 RGPD4Q7Z3J3 1758 aa11.95□□□□□ -0.5
SNCA-212ENST00000611107 NCAPD2Q15021 1401 aa11.94□□□□□ -0.5
SNCA-212ENST00000611107 TOGARAM1Q9Y4F4 1720 aa11.94□□□□□ -0.5
SNCA-212ENST00000611107 PER1O15534 1290 aaPredicted RBP11.94□□□□□ -0.5
SNCA-212ENST00000611107 AMER1Q5JTC6 1135 aaPredicted RBP11.94□□□□□ -0.5
SNCA-212ENST00000611107 DDX54Q8TDD1 881 aaKnown RBP11.94□□□□□ -0.5
SNCA-212ENST00000611107 BCL11BQ9C0K0 894 aaPredicted RBP11.94□□□□□ -0.5
SNCA-212ENST00000611107 PDGFDQ9GZP0 370 aaPredicted RBP11.94□□□□□ -0.5
SNCA-212ENST00000611107 NSD2O96028 1365 aa11.93□□□□□ -0.5
SNCA-212ENST00000611107 EYA1Q99502 592 aa11.93□□□□□ -0.5
SNCA-212ENST00000611107 PKD1L3Q7Z443 1732 aa11.93□□□□□ -0.5
SNCA-212ENST00000611107 EIF4A2Q14240 407 aaKnown RBP11.92□□□□□ -0.5
SNCA-212ENST00000611107 ITGB4P16144 1822 aa11.91□□□□□ -0.5
SNCA-212ENST00000611107 KCNQ4P56696 695 aa11.91□□□□□ -0.5
SNCA-212ENST00000611107 ZCRB1Q8TBF4 217 aaKnown RBP11.91□□□□□ -0.5
SNCA-212ENST00000611107 SMG6Q86US8 1419 aaKnown RBP11.91□□□□□ -0.5
SNCA-212ENST00000611107 KIF24Q5T7B8 1368 aa11.91□□□□□ -0.5
SNCA-212ENST00000611107 PAPPAQ13219 1627 aa11.9□□□□□ -0.5
SNCA-212ENST00000611107 PLSCR1O15162 318 aa11.9□□□□□ -0.5
SNCA-212ENST00000611107 CYP27B1O15528 508 aa11.9□□□□□ -0.5
SNCA-212ENST00000611107 LRRC4BQ9NT99 713 aa11.9□□□□□ -0.5
SNCA-212ENST00000611107 CASZ1Q86V15 1759 aa11.9□□□□□ -0.51
SNCA-212ENST00000611107 TUBGCP6Q96RT7 1819 aa11.89□□□□□ -0.51
SNCA-212ENST00000611107 PRIM1P49642 420 aaKnown RBP11.89□□□□□ -0.51
SNCA-212ENST00000611107 CNGB1Q14028 1251 aaPredicted RBP11.89□□□□□ -0.51
SNCA-212ENST00000611107 TXNRD1Q16881 649 aa11.89□□□□□ -0.51
SNCA-212ENST00000611107 PARD3Q8TEW0 1356 aa11.89□□□□□ -0.51
SNCA-212ENST00000611107 LRP5O75197 1615 aa11.89□□□□□ -0.51
SNCA-212ENST00000611107 MORC1Q86VD1 984 aa11.88□□□□□ -0.51
SNCA-212ENST00000611107 AEBP1Q8IUX7 1158 aa11.88□□□□□ -0.51
SNCA-212ENST00000611107 LY75O60449 1722 aa11.88□□□□□ -0.51
SNCA-212ENST00000611107 TATP17735 454 aaPredicted RBP11.87□□□□□ -0.51
SNCA-212ENST00000611107 CC2D1BQ5T0F9 858 aaKnown RBP11.87□□□□□ -0.51
SNCA-212ENST00000611107 KNSTRNQ9Y448 316 aa11.87□□□□□ -0.51
SNCA-212ENST00000611107 VIRMAQ69YN4 1812 aaKnown RBP11.86□□□□□ -0.51
SNCA-212ENST00000611107 RAPGEF4Q8WZA2 1011 aa11.86□□□□□ -0.51
SNCA-212ENST00000611107 IGSF1Q8N6C5 1336 aa11.86□□□□□ -0.51
SNCA-212ENST00000611107 ZNF827Q17R98 1081 aa11.85□□□□□ -0.51
SNCA-212ENST00000611107 IL13P35225 146 aa11.84□□□□□ -0.51
SNCA-212ENST00000611107 SYTL4Q96C24 671 aaPredicted RBP11.84□□□□□ -0.51
SNCA-212ENST00000611107 TAF1LQ8IZX4 1826 aa11.83□□□□□ -0.51
SNCA-212ENST00000611107 COL3A1P02461 1466 aaPredicted RBP11.83□□□□□ -0.52
SNCA-212ENST00000611107 MTHFSP49914 203 aa11.83□□□□□ -0.52
SNCA-212ENST00000611107 PCDH11XQ9BZA7 1347 aa11.82□□□□□ -0.52
SNCA-212ENST00000611107 PCDH11YQ9BZA8 1340 aa11.82□□□□□ -0.52
SNCA-212ENST00000611107 NPC1L1Q9UHC9 1359 aa11.81□□□□□ -0.52
SNCA-212ENST00000611107 PHKG2P15735 406 aa11.81□□□□□ -0.52
SNCA-212ENST00000611107 NKX1-1Q15270 411 aaPredicted RBP11.81□□□□□ -0.52
SNCA-212ENST00000611107 SLC15A2Q16348 729 aa11.81□□□□□ -0.52
SNCA-212ENST00000611107 SMIM5Q71RC9 77 aa11.81□□□□□ -0.52
SNCA-212ENST00000611107 AMIGO3Q86WK7 504 aa11.81□□□□□ -0.52
SNCA-212ENST00000611107 PIGBQ92521 554 aa11.81□□□□□ -0.52
SNCA-212ENST00000611107 AKT1S1Q96B36 256 aa11.81□□□□□ -0.52
SNCA-212ENST00000611107 KDM6AO15550 1401 aaPredicted RBP11.8□□□□□ -0.52
SNCA-212ENST00000611107 NBPF14Q5TI25 921 aa11.8□□□□□ -0.52
SNCA-212ENST00000611107 C5P01031 1676 aa11.79□□□□□ -0.52
SNCA-212ENST00000611107 ZBTB7AO95365 584 aa11.79□□□□□ -0.52
SNCA-212ENST00000611107 SULT6B1Q6IMI4 303 aa11.79□□□□□ -0.52
SNCA-212ENST00000611107 MPRIPQ6WCQ1 1025 aa11.79□□□□□ -0.52
SNCA-212ENST00000611107 QSER1Q2KHR3 1735 aa11.78□□□□□ -0.52
SNCA-212ENST00000611107 HMOX1P09601 288 aa11.78□□□□□ -0.52
SNCA-212ENST00000611107 ASAP1Q9ULH1 1129 aa11.78□□□□□ -0.52
SNCA-212ENST00000611107 ATF5Q9Y2D1 282 aaPredicted RBP11.78□□□□□ -0.52
SNCA-212ENST00000611107 KDRP35968 1356 aa11.78□□□□□ -0.52
SNCA-212ENST00000611107 SCN11AQ9UI33 1791 aa11.77□□□□□ -0.52
SNCA-212ENST00000611107 PTGER2P43116 358 aa11.77□□□□□ -0.53
SNCA-212ENST00000611107 SLC4A9Q96Q91 983 aa11.77□□□□□ -0.53
SNCA-212ENST00000611107 STK32BQ9NY57 414 aa11.77□□□□□ -0.53
SNCA-212ENST00000611107 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.77□□□□□ -0.53
SNCA-212ENST00000611107 SPG7Q9UQ90 795 aa11.77□□□□□ -0.53
SNCA-212ENST00000611107 PNPLA7Q6ZV29 1317 aa11.77□□□□□ -0.53
SNCA-212ENST00000611107 SGIP1Q9BQI5 828 aa11.76□□□□□ -0.53
SNCA-212ENST00000611107 COL24A1Q17RW2 1714 aa11.76□□□□□ -0.53
SNCA-212ENST00000611107 PALLDQ8WX93 1383 aa11.76□□□□□ -0.53
SNCA-212ENST00000611107 UBR3Q6ZT12 1888 aa11.75□□□□□ -0.53
SNCA-212ENST00000611107 ZNF316A6NFI3 1004 aaPredicted RBP11.75□□□□□ -0.53
SNCA-212ENST00000611107 ITPK1Q13572 414 aa11.75□□□□□ -0.53
SNCA-212ENST00000611107 ZNF530Q6P9A1 599 aaPredicted RBP11.75□□□□□ -0.53
SNCA-212ENST00000611107 IFNL2Q8IZJ0 200 aa11.75□□□□□ -0.53
SNCA-212ENST00000611107 ATG3Q9NT62 314 aa11.75□□□□□ -0.53
SNCA-212ENST00000611107 CCNL1Q9UK58 526 aaPredicted RBP11.75□□□□□ -0.53
SNCA-212ENST00000611107 MYH14Q7Z406 1995 aaKnown RBP11.75□□□□□ -0.53
SNCA-212ENST00000611107 PPP2R1AP30153 589 aa11.74□□□□□ -0.53
SNCA-212ENST00000611107 DDX10Q13206 875 aaKnown RBP11.74□□□□□ -0.53
SNCA-212ENST00000611107 SLC27A3Q5K4L6 730 aa11.74□□□□□ -0.53
SNCA-212ENST00000611107 LGR6Q9HBX8 967 aa11.74□□□□□ -0.53
SNCA-212ENST00000611107 C4BP0C0L5 1744 aa11.74□□□□□ -0.53
SNCA-212ENST00000611107 DIAPH1O60610 1272 aaKnown RBP11.73□□□□□ -0.53
SNCA-212ENST00000611107 PLEKHO1Q53GL0 409 aaPredicted RBP11.73□□□□□ -0.53
SNCA-212ENST00000611107 COL23A1Q86Y22 540 aaPredicted RBP11.73□□□□□ -0.53
SNCA-212ENST00000611107 LINC00116Q8NCU8 138 aa11.73□□□□□ -0.53
SNCA-212ENST00000611107 DLG5Q8TDM6 1919 aa11.73□□□□□ -0.53
SNCA-212ENST00000611107 SPON1Q9HCB6 807 aa11.73□□□□□ -0.53
SNCA-212ENST00000611107 ADAMTS7Q9UKP4 1686 aa11.73□□□□□ -0.53
SNCA-212ENST00000611107 MTHFSDQ2M296 383 aaKnown RBP11.72□□□□□ -0.53
SNCA-212ENST00000611107 COL5A3P25940 1745 aaPredicted RBP11.72□□□□□ -0.53
SNCA-212ENST00000611107 PHACTR3Q96KR7 559 aa11.71□□□□□ -0.53
SNCA-212ENST00000611107 TMOD3Q9NYL9 352 aa11.71□□□□□ -0.53
SNCA-212ENST00000611107 TJP1Q07157 1748 aa11.71□□□□□ -0.54
SNCA-212ENST00000611107 LOC102724428A0A0B4J2F2 783 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms