RNA–Protein interactions for RNA: ENST00000610468.4

MUC1-222, Transcript of mucin 1, cell surface associated, human

TSL 1 (best)

Gene MUC1, Length 1,162 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MUC1-222	ENST00000610468	PRIM1	P49642	420 aa	Known RBP	19.46	■□□□□ 0.71
MUC1-222	ENST00000610468	CDCA8	Q53HL2	280 aa		19.46	■□□□□ 0.71
MUC1-222	ENST00000610468	NBPF6	Q5VWK0	638 aa		19.46	■□□□□ 0.71
MUC1-222	ENST00000610468	NBPF4	Q96M43	638 aa		19.46	■□□□□ 0.71
MUC1-222	ENST00000610468	KIF24	Q5T7B8	1368 aa		19.45	■□□□□ 0.7
MUC1-222	ENST00000610468	ARX	Q96QS3	562 aa		19.45	■□□□□ 0.7
MUC1-222	ENST00000610468	SHANK3	Q9BYB0	1731 aa		19.45	■□□□□ 0.7
MUC1-222	ENST00000610468	INSR	P06213	1382 aa		19.44	■□□□□ 0.7
MUC1-222	ENST00000610468	SMG6	Q86US8	1419 aa	Known RBP	19.44	■□□□□ 0.7
MUC1-222	ENST00000610468	UTRN	P46939	3433 aa		19.44	■□□□□ 0.7
MUC1-222	ENST00000610468	SLC16A10	Q8TF71	515 aa		19.43	■□□□□ 0.7
MUC1-222	ENST00000610468	FLT4	P35916	1363 aa		19.43	■□□□□ 0.7
MUC1-222	ENST00000610468	DOT1L	Q8TEK3	1739 aa		19.42	■□□□□ 0.7
MUC1-222	ENST00000610468	SYTL4	Q96C24	671 aa	Predicted RBP	19.42	■□□□□ 0.7
MUC1-222	ENST00000610468	PNPLA7	Q6ZV29	1317 aa		19.42	■□□□□ 0.7
MUC1-222	ENST00000610468	HSP90AB2P	Q58FF8	381 aa		19.41	■□□□□ 0.7
MUC1-222	ENST00000610468	RAPGEF4	Q8WZA2	1011 aa		19.41	■□□□□ 0.7
MUC1-222	ENST00000610468	CARD14	Q9BXL6	1004 aa		19.41	■□□□□ 0.7
MUC1-222	ENST00000610468	QSER1	Q2KHR3	1735 aa		19.4	■□□□□ 0.7
MUC1-222	ENST00000610468	USHBP1	Q8N6Y0	703 aa		19.4	■□□□□ 0.7
MUC1-222	ENST00000610468	PCGF6	Q9BYE7	350 aa		19.4	■□□□□ 0.7
MUC1-222	ENST00000610468	TIMELESS	Q9UNS1	1208 aa		19.4	■□□□□ 0.7
MUC1-222	ENST00000610468	RGPD2	P0DJD1	1756 aa		19.39	■□□□□ 0.7
MUC1-222	ENST00000610468	KCNQ4	P56696	695 aa		19.39	■□□□□ 0.69
MUC1-222	ENST00000610468	LY75	O60449	1722 aa		19.39	■□□□□ 0.69
MUC1-222	ENST00000610468	NCAPD2	Q15021	1401 aa		19.38	■□□□□ 0.69
MUC1-222	ENST00000610468	NSD3	Q9BZ95	1437 aa		19.38	■□□□□ 0.69
MUC1-222	ENST00000610468	TFCP2L1	Q9NZI6	479 aa		19.38	■□□□□ 0.69
MUC1-222	ENST00000610468	COL24A1	Q17RW2	1714 aa		19.37	■□□□□ 0.69
MUC1-222	ENST00000610468	PCDH11X	Q9BZA7	1347 aa		19.37	■□□□□ 0.69
MUC1-222	ENST00000610468	PCDH11Y	Q9BZA8	1340 aa		19.37	■□□□□ 0.69
MUC1-222	ENST00000610468	TAT	P17735	454 aa	Predicted RBP	19.37	■□□□□ 0.69
MUC1-222	ENST00000610468	CCNL1	Q9UK58	526 aa	Predicted RBP	19.37	■□□□□ 0.69
MUC1-222	ENST00000610468	KIF20B	Q96Q89	1820 aa		19.36	■□□□□ 0.69
MUC1-222	ENST00000610468	POLD1	P28340	1107 aa		19.35	■□□□□ 0.69
MUC1-222	ENST00000610468	CLSPN	Q9HAW4	1339 aa		19.34	■□□□□ 0.69
MUC1-222	ENST00000610468	EMILIN1	Q9Y6C2	1016 aa		19.34	■□□□□ 0.69
MUC1-222	ENST00000610468	CYP27B1	O15528	508 aa		19.33	■□□□□ 0.68
MUC1-222	ENST00000610468	ZNF784	Q8NCA9	323 aa	Predicted RBP	19.33	■□□□□ 0.68
MUC1-222	ENST00000610468	TUBGCP6	Q96RT7	1819 aa		19.32	■□□□□ 0.68
MUC1-222	ENST00000610468	ANKRD26	Q9UPS8	1709 aa		19.31	■□□□□ 0.68
MUC1-222	ENST00000610468	KAT6B	Q8WYB5	2073 aa		19.31	■□□□□ 0.68
MUC1-222	ENST00000610468	PALLD	Q8WX93	1383 aa		19.31	■□□□□ 0.68
MUC1-222	ENST00000610468	WASHC2A	Q641Q2	1341 aa		19.3	■□□□□ 0.68
MUC1-222	ENST00000610468	COL23A1	Q86Y22	540 aa	Predicted RBP	19.3	■□□□□ 0.68
MUC1-222	ENST00000610468	PKD1L3	Q7Z443	1732 aa		19.29	■□□□□ 0.68
MUC1-222	ENST00000610468	HMGB2	P26583	209 aa	Known RBP	19.29	■□□□□ 0.68
MUC1-222	ENST00000610468	NKX1-1	Q15270	411 aa	Predicted RBP	19.29	■□□□□ 0.68
MUC1-222	ENST00000610468	MPRIP	Q6WCQ1	1025 aa		19.27	■□□□□ 0.68
MUC1-222	ENST00000610468	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	19.27	■□□□□ 0.68
MUC1-222	ENST00000610468	TOGARAM1	Q9Y4F4	1720 aa		19.27	■□□□□ 0.68
MUC1-222	ENST00000610468	GOLGB1	Q14789	3259 aa	Known RBP	19.26	■□□□□ 0.67
MUC1-222	ENST00000610468	GPR162	Q16538	588 aa		19.26	■□□□□ 0.67
MUC1-222	ENST00000610468	NLGN2	Q8NFZ4	835 aa		19.26	■□□□□ 0.67
MUC1-222	ENST00000610468	POLK	Q9UBT6	870 aa		19.26	■□□□□ 0.67
MUC1-222	ENST00000610468	C5	P01031	1676 aa		19.25	■□□□□ 0.67
MUC1-222	ENST00000610468	PLEKHG2	Q9H7P9	1386 aa		19.25	■□□□□ 0.67
MUC1-222	ENST00000610468	PPM1G	O15355	546 aa	Predicted RBP	19.25	■□□□□ 0.67
MUC1-222	ENST00000610468	KLHL34	Q8N239	644 aa		19.25	■□□□□ 0.67
MUC1-222	ENST00000610468	SMARCC1	Q92922	1105 aa	Predicted RBP	19.25	■□□□□ 0.67
MUC1-222	ENST00000610468	EYA1	Q99502	592 aa		19.25	■□□□□ 0.67
MUC1-222	ENST00000610468	SPG7	Q9UQ90	795 aa		19.25	■□□□□ 0.67
MUC1-222	ENST00000610468	FLAD1	Q8NFF5	587 aa		19.24	■□□□□ 0.67
MUC1-222	ENST00000610468	PIGB	Q92521	554 aa		19.24	■□□□□ 0.67
MUC1-222	ENST00000610468	MSH5	O43196	834 aa		19.23	■□□□□ 0.67
MUC1-222	ENST00000610468	MSL1	Q68DK7	614 aa		19.21	■□□□□ 0.67
MUC1-222	ENST00000610468	C4B	P0C0L5	1744 aa		19.2	■□□□□ 0.66
MUC1-222	ENST00000610468	EIF4A2	Q14240	407 aa	Known RBP	19.2	■□□□□ 0.66
MUC1-222	ENST00000610468	AMIGO3	Q86WK7	504 aa		19.2	■□□□□ 0.66
MUC1-222	ENST00000610468	CHD4	Q14839	1912 aa		19.19	■□□□□ 0.66
MUC1-222	ENST00000610468	PHKG2	P15735	406 aa		19.19	■□□□□ 0.66
MUC1-222	ENST00000610468	AK7	Q96M32	723 aa		19.19	■□□□□ 0.66
MUC1-222	ENST00000610468	CD2AP	Q9Y5K6	639 aa		19.19	■□□□□ 0.66
MUC1-222	ENST00000610468	TAF1L	Q8IZX4	1826 aa		19.18	■□□□□ 0.66
MUC1-222	ENST00000610468	LOC102724428	A0A0B4J2F2	783 aa		19.18	■□□□□ 0.66
MUC1-222	ENST00000610468	YBX3	P16989	372 aa	Known RBP eCLIP	19.18	■□□□□ 0.66
MUC1-222	ENST00000610468	SIK1	P57059	783 aa		19.18	■□□□□ 0.66
MUC1-222	ENST00000610468	IFNL2	Q8IZJ0	200 aa		19.18	■□□□□ 0.66
MUC1-222	ENST00000610468	IGSF1	Q8N6C5	1336 aa		19.18	■□□□□ 0.66
MUC1-222	ENST00000610468	ITGB4	P16144	1822 aa		19.17	■□□□□ 0.66
MUC1-222	ENST00000610468	EIF4G2	P78344	907 aa	Known RBP eCLIP	19.17	■□□□□ 0.66
MUC1-222	ENST00000610468	PELP1	Q8IZL8	1130 aa	Known RBP	19.17	■□□□□ 0.66
MUC1-222	ENST00000610468	TMOD3	Q9NYL9	352 aa		19.17	■□□□□ 0.66
MUC1-222	ENST00000610468	MAP2	P11137	1827 aa	Known RBP	19.16	■□□□□ 0.66
MUC1-222	ENST00000610468	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	19.16	■□□□□ 0.66
MUC1-222	ENST00000610468	GRIN3B	O60391	1043 aa		19.16	■□□□□ 0.66
MUC1-222	ENST00000610468	SSFA2	P28290	1259 aa		19.16	■□□□□ 0.66
MUC1-222	ENST00000610468	ASAP1	Q9ULH1	1129 aa		19.16	■□□□□ 0.66
MUC1-222	ENST00000610468	HSPA5	P11021	654 aa	Known RBP	19.15	■□□□□ 0.66
MUC1-222	ENST00000610468	TNNT2	P45379	298 aa	Predicted RBP	19.15	■□□□□ 0.66
MUC1-222	ENST00000610468	LINC00116	Q8NCU8	138 aa		19.15	■□□□□ 0.66
MUC1-222	ENST00000610468	POLR3GL	Q9BT43	218 aa		19.14	■□□□□ 0.65
MUC1-222	ENST00000610468	PANK3	Q9H999	370 aa		19.14	■□□□□ 0.65
MUC1-222	ENST00000610468	ATG3	Q9NT62	314 aa		19.14	■□□□□ 0.65
MUC1-222	ENST00000610468	KDR	P35968	1356 aa		19.14	■□□□□ 0.65
MUC1-222	ENST00000610468	C1QTNF8	P60827	252 aa		19.13	■□□□□ 0.65
MUC1-222	ENST00000610468	ITPK1	Q13572	414 aa		19.13	■□□□□ 0.65
MUC1-222	ENST00000610468	UBR3	Q6ZT12	1888 aa		19.12	■□□□□ 0.65
MUC1-222	ENST00000610468	PHF14	O94880	888 aa		19.12	■□□□□ 0.65
MUC1-222	ENST00000610468	SMIM5	Q71RC9	77 aa		19.11	■□□□□ 0.65

Retrieved 100 of 20,778 RNA–protein pairs in 31 ms