RNA–Protein interactions for RNA: ENST00000606878.1

LINC00240-203, long intergenic non-protein coding RNA 240, humanhuman

TSL 1 (best)

Gene LINC00240, Length 927 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00240-203ENST00000606878 ZEB1P37275 1124 aaPredicted RBP22.46■■□□□ 1.19
LINC00240-203ENST00000606878 MTHFSP49914 203 aa22.46■■□□□ 1.19
LINC00240-203ENST00000606878 SPG7Q9UQ90 795 aa22.45■■□□□ 1.18
LINC00240-203ENST00000606878 MEGF6O75095 1541 aa22.45■■□□□ 1.18
LINC00240-203ENST00000606878 ANKRD26Q9UPS8 1709 aa22.45■■□□□ 1.18
LINC00240-203ENST00000606878 NBPF14Q5TI25 921 aa22.44■■□□□ 1.18
LINC00240-203ENST00000606878 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.43■■□□□ 1.18
LINC00240-203ENST00000606878 RGPD2P0DJD1 1756 aa22.43■■□□□ 1.18
LINC00240-203ENST00000606878 PCDH11XQ9BZA7 1347 aa22.42■■□□□ 1.18
LINC00240-203ENST00000606878 PCDH11YQ9BZA8 1340 aa22.42■■□□□ 1.18
LINC00240-203ENST00000606878 PRIM1P49642 420 aaKnown RBP22.42■■□□□ 1.18
LINC00240-203ENST00000606878 SYTL4Q96C24 671 aaPredicted RBP22.42■■□□□ 1.18
LINC00240-203ENST00000606878 KAT6BQ8WYB5 2073 aa22.42■■□□□ 1.18
LINC00240-203ENST00000606878 TNS1Q9HBL0 1735 aaKnown RBP22.4■■□□□ 1.18
LINC00240-203ENST00000606878 IGSF1Q8N6C5 1336 aa22.4■■□□□ 1.18
LINC00240-203ENST00000606878 IL13P35225 146 aa22.4■■□□□ 1.18
LINC00240-203ENST00000606878 PSDA5PKW4 1024 aaPredicted RBP22.39■■□□□ 1.17
LINC00240-203ENST00000606878 CYP27B1O15528 508 aa22.39■■□□□ 1.17
LINC00240-203ENST00000606878 TXNRD1Q16881 649 aa22.39■■□□□ 1.17
LINC00240-203ENST00000606878 PROM2Q8N271 834 aa22.39■■□□□ 1.17
LINC00240-203ENST00000606878 NCAPD2Q15021 1401 aa22.39■■□□□ 1.17
LINC00240-203ENST00000606878 R3HDM1Q15032 1099 aaKnown RBP22.38■■□□□ 1.17
LINC00240-203ENST00000606878 PLEKHO1Q53GL0 409 aaPredicted RBP22.37■■□□□ 1.17
LINC00240-203ENST00000606878 SBF2Q86WG5 1849 aa22.36■■□□□ 1.17
LINC00240-203ENST00000606878 DIAPH1O60610 1272 aaKnown RBP22.36■■□□□ 1.17
LINC00240-203ENST00000606878 SULT6B1Q6IMI4 303 aa22.36■■□□□ 1.17
LINC00240-203ENST00000606878 NKX1-1Q15270 411 aaPredicted RBP22.35■■□□□ 1.17
LINC00240-203ENST00000606878 IFNL2Q8IZJ0 200 aa22.35■■□□□ 1.17
LINC00240-203ENST00000606878 AMOTQ4VCS5 1084 aa22.34■■□□□ 1.17
LINC00240-203ENST00000606878 AEBP1Q8IUX7 1158 aa22.33■■□□□ 1.17
LINC00240-203ENST00000606878 PLEKHG2Q9H7P9 1386 aa22.31■■□□□ 1.16
LINC00240-203ENST00000606878 PHKG2P15735 406 aa22.31■■□□□ 1.16
LINC00240-203ENST00000606878 MPRIPQ6WCQ1 1025 aa22.31■■□□□ 1.16
LINC00240-203ENST00000606878 CFAP53Q96M91 514 aa22.31■■□□□ 1.16
LINC00240-203ENST00000606878 PPP2R1AP30153 589 aa22.3■■□□□ 1.16
LINC00240-203ENST00000606878 DDX10Q13206 875 aaKnown RBP22.3■■□□□ 1.16
LINC00240-203ENST00000606878 HSP90AB1P08238 724 aaKnown RBP22.29■■□□□ 1.16
LINC00240-203ENST00000606878 SLC27A3Q5K4L6 730 aa22.29■■□□□ 1.16
LINC00240-203ENST00000606878 STK32BQ9NY57 414 aa22.29■■□□□ 1.16
LINC00240-203ENST00000606878 HMOX1P09601 288 aa22.28■■□□□ 1.16
LINC00240-203ENST00000606878 NHSQ6T4R5 1651 aa22.27■■□□□ 1.16
LINC00240-203ENST00000606878 U2SURPO15042 1029 aaKnown RBP22.27■■□□□ 1.16
LINC00240-203ENST00000606878 ZNF530Q6P9A1 599 aaPredicted RBP22.27■■□□□ 1.16
LINC00240-203ENST00000606878 KDRP35968 1356 aa22.26■■□□□ 1.15
LINC00240-203ENST00000606878 C1orf141Q5JVX7 400 aa22.26■■□□□ 1.15
LINC00240-203ENST00000606878 SLC15A2Q16348 729 aa22.25■■□□□ 1.15
LINC00240-203ENST00000606878 PIGBQ92521 554 aa22.25■■□□□ 1.15
LINC00240-203ENST00000606878 SMARCC1Q92922 1105 aaPredicted RBP22.25■■□□□ 1.15
LINC00240-203ENST00000606878 DCAF5Q96JK2 942 aa22.25■■□□□ 1.15
LINC00240-203ENST00000606878 NUDCQ9Y266 331 aa22.25■■□□□ 1.15
LINC00240-203ENST00000606878 HMGB2P26583 209 aaKnown RBP22.24■■□□□ 1.15
LINC00240-203ENST00000606878 ANO8Q9HCE9 1232 aaPredicted RBP22.24■■□□□ 1.15
LINC00240-203ENST00000606878 LRRC4BQ9NT99 713 aa22.24■■□□□ 1.15
LINC00240-203ENST00000606878 TMOD3Q9NYL9 352 aa22.24■■□□□ 1.15
LINC00240-203ENST00000606878 ERVV-2B6SEH9 535 aa22.23■■□□□ 1.15
LINC00240-203ENST00000606878 SHANK3Q9BYB0 1731 aa22.23■■□□□ 1.15
LINC00240-203ENST00000606878 CCNL1Q9UK58 526 aaPredicted RBP22.22■■□□□ 1.15
LINC00240-203ENST00000606878 RGPD3A6NKT7 1758 aaPredicted RBP22.22■■□□□ 1.15
LINC00240-203ENST00000606878 RGPD4Q7Z3J3 1758 aa22.22■■□□□ 1.15
LINC00240-203ENST00000606878 RREB1Q92766 1687 aa22.21■■□□□ 1.15
LINC00240-203ENST00000606878 BTAF1O14981 1849 aa22.2■■□□□ 1.14
LINC00240-203ENST00000606878 KCNQ4P56696 695 aa22.2■■□□□ 1.14
LINC00240-203ENST00000606878 PKD1L3Q7Z443 1732 aa22.2■■□□□ 1.14
LINC00240-203ENST00000606878 CABP4P57796 275 aa22.19■■□□□ 1.14
LINC00240-203ENST00000606878 RALBP1Q15311 655 aa22.19■■□□□ 1.14
LINC00240-203ENST00000606878 AKAP4Q5JQC9 854 aa22.19■■□□□ 1.14
LINC00240-203ENST00000606878 NUP188Q5SRE5 1749 aa22.19■■□□□ 1.14
LINC00240-203ENST00000606878 PALLDQ8WX93 1383 aa22.17■■□□□ 1.14
LINC00240-203ENST00000606878 U2AF1L5P0DN76 240 aaPredicted RBP22.17■■□□□ 1.14
LINC00240-203ENST00000606878 U2AF1Q01081 240 aaKnown RBP eCLIP22.17■■□□□ 1.14
LINC00240-203ENST00000606878 DOT1LQ8TEK3 1739 aa22.17■■□□□ 1.14
LINC00240-203ENST00000606878 MTHFSDQ2M296 383 aaKnown RBP22.16■■□□□ 1.14
LINC00240-203ENST00000606878 AKT1S1Q96B36 256 aa22.16■■□□□ 1.14
LINC00240-203ENST00000606878 ASAP1Q9ULH1 1129 aa22.16■■□□□ 1.14
LINC00240-203ENST00000606878 COL3A1P02461 1466 aaPredicted RBP22.15■■□□□ 1.14
LINC00240-203ENST00000606878 SPON1Q9HCB6 807 aa22.15■■□□□ 1.14
LINC00240-203ENST00000606878 ATG3Q9NT62 314 aa22.15■■□□□ 1.14
LINC00240-203ENST00000606878 ZNF827Q17R98 1081 aa22.14■■□□□ 1.13
LINC00240-203ENST00000606878 NFATC2IPQ8NCF5 419 aa22.14■■□□□ 1.13
LINC00240-203ENST00000606878 TFCP2L1Q9NZI6 479 aa22.14■■□□□ 1.13
LINC00240-203ENST00000606878 FCHSD2O94868 740 aa22.13■■□□□ 1.13
LINC00240-203ENST00000606878 PDGFDQ9GZP0 370 aaPredicted RBP22.13■■□□□ 1.13
LINC00240-203ENST00000606878 LOC102724428A0A0B4J2F2 783 aa22.12■■□□□ 1.13
LINC00240-203ENST00000606878 PRKAR2BP31323 418 aa22.12■■□□□ 1.13
LINC00240-203ENST00000606878 SIK1P57059 783 aa22.12■■□□□ 1.13
LINC00240-203ENST00000606878 GAS2L2Q8NHY3 880 aa22.12■■□□□ 1.13
LINC00240-203ENST00000606878 SRCAPQ6ZRS2 3230 aa22.12■■□□□ 1.13
LINC00240-203ENST00000606878 LGR6Q9HBX8 967 aa22.11■■□□□ 1.13
LINC00240-203ENST00000606878 RNMTO43148 476 aaKnown RBP22.1■■□□□ 1.13
LINC00240-203ENST00000606878 ZBTB7AO95365 584 aa22.1■■□□□ 1.13
LINC00240-203ENST00000606878 RSPH6AQ9H0K4 717 aa22.1■■□□□ 1.13
LINC00240-203ENST00000606878 KDM6AO15550 1401 aaPredicted RBP22.09■■□□□ 1.13
LINC00240-203ENST00000606878 ATP6V1AP38606 617 aa22.09■■□□□ 1.13
LINC00240-203ENST00000606878 PHACTR3Q96KR7 559 aa22.09■■□□□ 1.13
LINC00240-203ENST00000606878 ZNF316A6NFI3 1004 aaPredicted RBP22.08■■□□□ 1.13
LINC00240-203ENST00000606878 GNAT3A8MTJ3 354 aa22.08■■□□□ 1.13
LINC00240-203ENST00000606878 RBM42Q9BTD8 480 aaKnown RBP22.08■■□□□ 1.13
LINC00240-203ENST00000606878 SLC52A2Q9HAB3 445 aa22.08■■□□□ 1.13
LINC00240-203ENST00000606878 ATF5Q9Y2D1 282 aaPredicted RBP22.08■■□□□ 1.13
LINC00240-203ENST00000606878 SLC16A10Q8TF71 515 aa22.07■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms