RNA–Protein interactions for RNA: ENST00000600970.5

USE1-208, Transcript of unconventional SNARE in the ER 1, humanhuman

TSL 5

Gene USE1, Length 826 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USE1-208ENST00000600970 PRIM1P49642 420 aaKnown RBP23.78■■□□□ 1.4
USE1-208ENST00000600970 SYTL4Q96C24 671 aaPredicted RBP23.78■■□□□ 1.4
USE1-208ENST00000600970 PUS7Q96PZ0 661 aaKnown RBP23.77■■□□□ 1.4
USE1-208ENST00000600970 NSD2O96028 1365 aa23.77■■□□□ 1.4
USE1-208ENST00000600970 HOXC9P31274 260 aa23.75■■□□□ 1.39
USE1-208ENST00000600970 PELP1Q8IZL8 1130 aaKnown RBP23.75■■□□□ 1.39
USE1-208ENST00000600970 NLGN2Q8NFZ4 835 aa23.75■■□□□ 1.39
USE1-208ENST00000600970 MAP3K19Q56UN5 1328 aa23.75■■□□□ 1.39
USE1-208ENST00000600970 GOLGB1Q14789 3259 aaKnown RBP23.74■■□□□ 1.39
USE1-208ENST00000600970 FBLN1P23142 703 aa23.73■■□□□ 1.39
USE1-208ENST00000600970 ZCRB1Q8TBF4 217 aaKnown RBP23.73■■□□□ 1.39
USE1-208ENST00000600970 COG3Q96JB2 828 aa23.73■■□□□ 1.39
USE1-208ENST00000600970 MEGF6O75095 1541 aa23.73■■□□□ 1.39
USE1-208ENST00000600970 AMPHP49418 695 aa23.71■■□□□ 1.39
USE1-208ENST00000600970 GIGYF1O75420 1035 aaPredicted RBP23.7■■□□□ 1.38
USE1-208ENST00000600970 CCNL1Q9UK58 526 aaPredicted RBP23.7■■□□□ 1.38
USE1-208ENST00000600970 COL23A1Q86Y22 540 aaPredicted RBP23.68■■□□□ 1.38
USE1-208ENST00000600970 TESK2Q96S53 571 aa23.67■■□□□ 1.38
USE1-208ENST00000600970 USP47Q96K76 1375 aa23.66■■□□□ 1.38
USE1-208ENST00000600970 MSH5O43196 834 aa23.66■■□□□ 1.38
USE1-208ENST00000600970 YBX3P16989 372 aaKnown RBP eCLIP23.66■■□□□ 1.385e-7■■□□□ 12.5
USE1-208ENST00000600970 C5P01031 1676 aa23.65■■□□□ 1.38
USE1-208ENST00000600970 NBPF6Q5VWK0 638 aa23.65■■□□□ 1.38
USE1-208ENST00000600970 NBPF4Q96M43 638 aa23.65■■□□□ 1.38
USE1-208ENST00000600970 RTL1A6NKG5 1358 aa23.65■■□□□ 1.38
USE1-208ENST00000600970 GRIN3BO60391 1043 aa23.64■■□□□ 1.37
USE1-208ENST00000600970 TONSLQ96HA7 1378 aa23.64■■□□□ 1.37
USE1-208ENST00000600970 ST20-MTHFSA0A0A6YYL1 179 aa23.63■■□□□ 1.37
USE1-208ENST00000600970 RRS1Q15050 365 aaKnown RBP23.63■■□□□ 1.37
USE1-208ENST00000600970 USHBP1Q8N6Y0 703 aa23.63■■□□□ 1.37
USE1-208ENST00000600970 CGNL1Q0VF96 1302 aa23.62■■□□□ 1.37
USE1-208ENST00000600970 TAF1LQ8IZX4 1826 aa23.62■■□□□ 1.37
USE1-208ENST00000600970 MSL1Q68DK7 614 aa23.62■■□□□ 1.37
USE1-208ENST00000600970 RAPGEF4Q8WZA2 1011 aa23.6■■□□□ 1.37
USE1-208ENST00000600970 SMG6Q86US8 1419 aaKnown RBP23.59■■□□□ 1.37
USE1-208ENST00000600970 FYB1O15117 783 aa23.58■■□□□ 1.37
USE1-208ENST00000600970 GGNBP2Q9H3C7 697 aa23.58■■□□□ 1.37
USE1-208ENST00000600970 SLC24A1O60721 1099 aa23.57■■□□□ 1.36
USE1-208ENST00000600970 TATP17735 454 aaPredicted RBP23.57■■□□□ 1.36
USE1-208ENST00000600970 PCDH11XQ9BZA7 1347 aa23.56■■□□□ 1.36
USE1-208ENST00000600970 PCDH11YQ9BZA8 1340 aa23.56■■□□□ 1.36
USE1-208ENST00000600970 PALLDQ8WX93 1383 aa23.55■■□□□ 1.36
USE1-208ENST00000600970 ITGB4P16144 1822 aa23.55■■□□□ 1.36
USE1-208ENST00000600970 CD2APQ9Y5K6 639 aa23.55■■□□□ 1.36
USE1-208ENST00000600970 TOGARAM1Q9Y4F4 1720 aa23.55■■□□□ 1.36
USE1-208ENST00000600970 KIF20BQ96Q89 1820 aa23.54■■□□□ 1.36
USE1-208ENST00000600970 C4BP0C0L5 1744 aa23.54■■□□□ 1.36
USE1-208ENST00000600970 ATP10DQ9P241 1426 aa23.54■■□□□ 1.36
USE1-208ENST00000600970 HSP90AB2PQ58FF8 381 aa23.54■■□□□ 1.36
USE1-208ENST00000600970 FLAD1Q8NFF5 587 aa23.54■■□□□ 1.36
USE1-208ENST00000600970 INSRP06213 1382 aa23.53■■□□□ 1.36
USE1-208ENST00000600970 MPRIPQ6WCQ1 1025 aa23.53■■□□□ 1.36
USE1-208ENST00000600970 HMGB2P26583 209 aaKnown RBP23.52■■□□□ 1.36
USE1-208ENST00000600970 CYP27B1O15528 508 aa23.51■■□□□ 1.35
USE1-208ENST00000600970 UBR3Q6ZT12 1888 aa23.51■■□□□ 1.35
USE1-208ENST00000600970 FLT4P35916 1363 aa23.51■■□□□ 1.35
USE1-208ENST00000600970 PKD1L3Q7Z443 1732 aa23.5■■□□□ 1.35
USE1-208ENST00000600970 AMIGO3Q86WK7 504 aa23.49■■□□□ 1.35
USE1-208ENST00000600970 KIF24Q5T7B8 1368 aa23.49■■□□□ 1.35
USE1-208ENST00000600970 TMF1P82094 1093 aa23.48■■□□□ 1.35
USE1-208ENST00000600970 IFFO2Q5TF58 517 aa23.48■■□□□ 1.35
USE1-208ENST00000600970 SMARCC1Q92922 1105 aaPredicted RBP23.47■■□□□ 1.35
USE1-208ENST00000600970 AK7Q96M32 723 aa23.47■■□□□ 1.35
USE1-208ENST00000600970 ADCY9O60503 1353 aa23.47■■□□□ 1.35
USE1-208ENST00000600970 CEP350Q5VT06 3117 aa23.46■■□□□ 1.35
USE1-208ENST00000600970 MAP2P11137 1827 aaKnown RBP23.46■■□□□ 1.35
USE1-208ENST00000600970 SMIM5Q71RC9 77 aa23.46■■□□□ 1.35
USE1-208ENST00000600970 GPBP1L1Q9HC44 474 aaPredicted RBP23.46■■□□□ 1.35
USE1-208ENST00000600970 PHF14O94880 888 aa23.44■■□□□ 1.34
USE1-208ENST00000600970 PIGBQ92521 554 aa23.44■■□□□ 1.34
USE1-208ENST00000600970 IGSF1Q8N6C5 1336 aa23.43■■□□□ 1.34
USE1-208ENST00000600970 NCAPD2Q15021 1401 aa23.42■■□□□ 1.34
USE1-208ENST00000600970 NSD3Q9BZ95 1437 aa23.42■■□□□ 1.34
USE1-208ENST00000600970 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP23.42■■□□□ 1.34
USE1-208ENST00000600970 NKX1-1Q15270 411 aaPredicted RBP23.42■■□□□ 1.34
USE1-208ENST00000600970 ZNF526Q8TF50 670 aaPredicted RBP23.42■■□□□ 1.34
USE1-208ENST00000600970 EMILIN1Q9Y6C2 1016 aa23.42■■□□□ 1.34
USE1-208ENST00000600970 WWC3Q9ULE0 1092 aa23.41■■□□□ 1.34
USE1-208ENST00000600970 ANKRD26Q9UPS8 1709 aa23.4■■□□□ 1.34
USE1-208ENST00000600970 SSFA2P28290 1259 aa23.4■■□□□ 1.34
USE1-208ENST00000600970 LOC102724428A0A0B4J2F2 783 aa23.39■■□□□ 1.33
USE1-208ENST00000600970 SIK1P57059 783 aa23.39■■□□□ 1.33
USE1-208ENST00000600970 LINC00116Q8NCU8 138 aa23.39■■□□□ 1.33
USE1-208ENST00000600970 CARD14Q9BXL6 1004 aa23.39■■□□□ 1.33
USE1-208ENST00000600970 HSPA6P17066 643 aa23.38■■□□□ 1.33
USE1-208ENST00000600970 SPG7Q9UQ90 795 aa23.38■■□□□ 1.33
USE1-208ENST00000600970 CDCA8Q53HL2 280 aa23.37■■□□□ 1.33
USE1-208ENST00000600970 PPM1GO15355 546 aaPredicted RBP23.35■■□□□ 1.33
USE1-208ENST00000600970 TMOD3Q9NYL9 352 aa23.35■■□□□ 1.33
USE1-208ENST00000600970 ASAP1Q9ULH1 1129 aa23.35■■□□□ 1.33
USE1-208ENST00000600970 ITPK1Q13572 414 aa23.34■■□□□ 1.33
USE1-208ENST00000600970 EYA1Q99502 592 aa23.34■■□□□ 1.33
USE1-208ENST00000600970 CICQ96RK0 1608 aaPredicted RBP23.33■■□□□ 1.33
USE1-208ENST00000600970 GNPATO15228 680 aa23.33■■□□□ 1.33
USE1-208ENST00000600970 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP23.33■■□□□ 1.33
USE1-208ENST00000600970 KIF13BQ9NQT8 1826 aa23.33■■□□□ 1.32
USE1-208ENST00000600970 WASHC2AQ641Q2 1341 aa23.33■■□□□ 1.32
USE1-208ENST00000600970 ATP6V1AP38606 617 aa23.32■■□□□ 1.32
USE1-208ENST00000600970 KIAA1551Q9HCM1 1747 aa23.32■■□□□ 1.32
USE1-208ENST00000600970 PHKG2P15735 406 aa23.31■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms