RNA–Protein interactions for RNA: ENST00000599575.5

SHKBP1-219, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 810 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-219ENST00000599575 ILDR2Q71H61 639 aa22.12■■□□□ 1.13
SHKBP1-219ENST00000599575 BCL9O00512 1426 aa22.12■■□□□ 1.13
SHKBP1-219ENST00000599575 FCHSD2O94868 740 aa22.11■■□□□ 1.13
SHKBP1-219ENST00000599575 PNNQ9H307 717 aaKnown RBP22.11■■□□□ 1.13
SHKBP1-219ENST00000599575 LRRC37A3O60309 1634 aa22.1■■□□□ 1.13
SHKBP1-219ENST00000599575 FAM196AQ6ZSG2 479 aa22.1■■□□□ 1.13
SHKBP1-219ENST00000599575 RGPD2P0DJD1 1756 aa22.1■■□□□ 1.13
SHKBP1-219ENST00000599575 PCDH11XQ9BZA7 1347 aa22.09■■□□□ 1.13
SHKBP1-219ENST00000599575 PCDH11YQ9BZA8 1340 aa22.09■■□□□ 1.13
SHKBP1-219ENST00000599575 U2AF1L5P0DN76 240 aaPredicted RBP22.09■■□□□ 1.13
SHKBP1-219ENST00000599575 U2AF1Q01081 240 aaKnown RBP eCLIP22.09■■□□□ 1.13
SHKBP1-219ENST00000599575 PLEKHO1Q53GL0 409 aaPredicted RBP22.09■■□□□ 1.13
SHKBP1-219ENST00000599575 DIEXFQ68CQ4 756 aaKnown RBP22.08■■□□□ 1.13
SHKBP1-219ENST00000599575 AEBP1Q8IUX7 1158 aa22.08■■□□□ 1.13
SHKBP1-219ENST00000599575 HMOX1P09601 288 aa22.06■■□□□ 1.12
SHKBP1-219ENST00000599575 CCDC125Q86Z20 511 aa22.06■■□□□ 1.12
SHKBP1-219ENST00000599575 MARCH10Q8NA82 808 aaPredicted RBP22.06■■□□□ 1.12
SHKBP1-219ENST00000599575 RSPH6AQ9H0K4 717 aa22.05■■□□□ 1.12
SHKBP1-219ENST00000599575 NEFMP07197 916 aa22.04■■□□□ 1.12
SHKBP1-219ENST00000599575 WDR43Q15061 677 aaKnown RBP eCLIP22.04■■□□□ 1.12
SHKBP1-219ENST00000599575 HSP90AB1P08238 724 aaKnown RBP22.03■■□□□ 1.12
SHKBP1-219ENST00000599575 IFNL2Q8IZJ0 200 aa22.03■■□□□ 1.12
SHKBP1-219ENST00000599575 DDX54Q8TDD1 881 aaKnown RBP22.03■■□□□ 1.12
SHKBP1-219ENST00000599575 PKD1L3Q7Z443 1732 aa22.03■■□□□ 1.12
SHKBP1-219ENST00000599575 BRWD3Q6RI45 1802 aa22.02■■□□□ 1.12
SHKBP1-219ENST00000599575 NKX1-1Q15270 411 aaPredicted RBP22.02■■□□□ 1.12
SHKBP1-219ENST00000599575 PRKAR2BP31323 418 aa22.01■■□□□ 1.11
SHKBP1-219ENST00000599575 GAS2L2Q8NHY3 880 aa22.01■■□□□ 1.11
SHKBP1-219ENST00000599575 CYP27B1O15528 508 aa22■■□□□ 1.11
SHKBP1-219ENST00000599575 MRS2Q9HD23 443 aa22■■□□□ 1.11
SHKBP1-219ENST00000599575 EP400Q96L91 3159 aa21.99■■□□□ 1.11
SHKBP1-219ENST00000599575 CCER2I3L3R5 266 aa21.99■■□□□ 1.11
SHKBP1-219ENST00000599575 PHKG2P15735 406 aa21.99■■□□□ 1.11
SHKBP1-219ENST00000599575 C1orf141Q5JVX7 400 aa21.99■■□□□ 1.11
SHKBP1-219ENST00000599575 AKAP4Q5JQC9 854 aa21.98■■□□□ 1.11
SHKBP1-219ENST00000599575 ZNF530Q6P9A1 599 aaPredicted RBP21.98■■□□□ 1.11
SHKBP1-219ENST00000599575 DCAF5Q96JK2 942 aa21.97■■□□□ 1.11
SHKBP1-219ENST00000599575 PNISRQ8TF01 805 aaKnown RBP21.96■■□□□ 1.11
SHKBP1-219ENST00000599575 PLEKHF1Q96S99 279 aa21.96■■□□□ 1.11
SHKBP1-219ENST00000599575 SOCS7O14512 581 aa21.95■■□□□ 1.1
SHKBP1-219ENST00000599575 MTHFSDQ2M296 383 aaKnown RBP21.95■■□□□ 1.1
SHKBP1-219ENST00000599575 FAM182BQ5T319 152 aa21.95■■□□□ 1.1
SHKBP1-219ENST00000599575 BCL11BQ9C0K0 894 aaPredicted RBP21.95■■□□□ 1.1
SHKBP1-219ENST00000599575 ADAMTS8Q9UP79 889 aa21.95■■□□□ 1.1
SHKBP1-219ENST00000599575 MAPK8IP3Q9UPT6 1336 aa21.95■■□□□ 1.1
SHKBP1-219ENST00000599575 SF3B2Q13435 895 aaKnown RBP21.94■■□□□ 1.1
SHKBP1-219ENST00000599575 SHANK3Q9BYB0 1731 aa21.94■■□□□ 1.1
SHKBP1-219ENST00000599575 UPF1Q92900 1129 aaKnown RBP eCLIP21.93■■□□□ 1.1
SHKBP1-219ENST00000599575 PHACTR3Q96KR7 559 aa21.93■■□□□ 1.1
SHKBP1-219ENST00000599575 ERVV-2B6SEH9 535 aa21.92■■□□□ 1.1
SHKBP1-219ENST00000599575 HTATSF1O43719 755 aaKnown RBP21.92■■□□□ 1.1
SHKBP1-219ENST00000599575 CCDC184Q52MB2 194 aa21.92■■□□□ 1.1
SHKBP1-219ENST00000599575 RUNDC1Q96C34 613 aa21.92■■□□□ 1.1
SHKBP1-219ENST00000599575 GNAT3A8MTJ3 354 aa21.91■■□□□ 1.1
SHKBP1-219ENST00000599575 TRIM37O94972 964 aa21.9■■□□□ 1.1
SHKBP1-219ENST00000599575 MAP3K5Q99683 1374 aa21.89■■□□□ 1.1
SHKBP1-219ENST00000599575 NFE2L2Q16236 605 aa21.88■■□□□ 1.09
SHKBP1-219ENST00000599575 PRIM1P49642 420 aaKnown RBP21.87■■□□□ 1.09
SHKBP1-219ENST00000599575 RTF1Q92541 710 aaKnown RBP21.87■■□□□ 1.09
SHKBP1-219ENST00000599575 NHSQ6T4R5 1651 aa21.86■■□□□ 1.09
SHKBP1-219ENST00000599575 PLSCR1O15162 318 aa21.86■■□□□ 1.09
SHKBP1-219ENST00000599575 HMGB2P26583 209 aaKnown RBP21.86■■□□□ 1.09
SHKBP1-219ENST00000599575 BAG6P46379 1132 aa21.86■■□□□ 1.09
SHKBP1-219ENST00000599575 LMOD3Q0VAK6 560 aa21.86■■□□□ 1.09
SHKBP1-219ENST00000599575 NCBP3Q53F19 620 aaKnown RBP21.85■■□□□ 1.09
SHKBP1-219ENST00000599575 MPRIPQ6WCQ1 1025 aa21.85■■□□□ 1.09
SHKBP1-219ENST00000599575 ACSBG1Q96GR2 724 aa21.85■■□□□ 1.09
SHKBP1-219ENST00000599575 TMOD3Q9NYL9 352 aa21.85■■□□□ 1.09
SHKBP1-219ENST00000599575 KDM6AO15550 1401 aaPredicted RBP21.85■■□□□ 1.09
SHKBP1-219ENST00000599575 RNMTO43148 476 aaKnown RBP21.84■■□□□ 1.09
SHKBP1-219ENST00000599575 KCNQ2O43526 872 aa21.84■■□□□ 1.09
SHKBP1-219ENST00000599575 APBA3O96018 575 aa21.84■■□□□ 1.09
SHKBP1-219ENST00000599575 SYTL4Q96C24 671 aaPredicted RBP21.84■■□□□ 1.09
SHKBP1-219ENST00000599575 CABP4P57796 275 aa21.83■■□□□ 1.09
SHKBP1-219ENST00000599575 MIER1Q8N108 512 aa21.83■■□□□ 1.09
SHKBP1-219ENST00000599575 CEMIPQ8WUJ3 1361 aa21.83■■□□□ 1.08
SHKBP1-219ENST00000599575 TMPOP42166 694 aaKnown RBP21.82■■□□□ 1.08
SHKBP1-219ENST00000599575 NGEFQ8N5V2 710 aa21.82■■□□□ 1.08
SHKBP1-219ENST00000599575 SMARCC1Q92922 1105 aaPredicted RBP21.82■■□□□ 1.08
SHKBP1-219ENST00000599575 SBF2Q86WG5 1849 aa21.82■■□□□ 1.08
SHKBP1-219ENST00000599575 ADAMTS7Q9UKP4 1686 aa21.82■■□□□ 1.08
SHKBP1-219ENST00000599575 CCDC146Q8IYE0 955 aa21.81■■□□□ 1.08
SHKBP1-219ENST00000599575 SLC52A2Q9HAB3 445 aa21.81■■□□□ 1.08
SHKBP1-219ENST00000599575 MRC1P22897 1456 aa21.8■■□□□ 1.08
SHKBP1-219ENST00000599575 RIPK4P57078 832 aa21.8■■□□□ 1.08
SHKBP1-219ENST00000599575 TEFQ10587 303 aa21.8■■□□□ 1.08
SHKBP1-219ENST00000599575 IL17REQ8NFR9 667 aa21.8■■□□□ 1.08
SHKBP1-219ENST00000599575 PIGBQ92521 554 aa21.8■■□□□ 1.08
SHKBP1-219ENST00000599575 LGR6Q9HBX8 967 aa21.8■■□□□ 1.08
SHKBP1-219ENST00000599575 DOT1LQ8TEK3 1739 aa21.8■■□□□ 1.08
SHKBP1-219ENST00000599575 TNS1Q9HBL0 1735 aaKnown RBP21.78■■□□□ 1.08
SHKBP1-219ENST00000599575 FAM9BQ8IZU0 186 aa21.78■■□□□ 1.08
SHKBP1-219ENST00000599575 NFATC2IPQ8NCF5 419 aa21.78■■□□□ 1.08
SHKBP1-219ENST00000599575 PTF1AQ7RTS3 328 aa21.77■■□□□ 1.08
SHKBP1-219ENST00000599575 CAMKK2Q96RR4 588 aa21.77■■□□□ 1.08
SHKBP1-219ENST00000599575 TOGARAM1Q9Y4F4 1720 aa21.77■■□□□ 1.08
SHKBP1-219ENST00000599575 RGPD3A6NKT7 1758 aaPredicted RBP21.76■■□□□ 1.07
SHKBP1-219ENST00000599575 RGPD4Q7Z3J3 1758 aa21.76■■□□□ 1.07
SHKBP1-219ENST00000599575 APAF1O14727 1248 aa21.76■■□□□ 1.07
SHKBP1-219ENST00000599575 SLC27A3Q5K4L6 730 aa21.76■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms