RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 NBPF4Q96M43 638 aa13.57□□□□□ -0.24
VRK3-216ENST00000599342 CARD14Q9BXL6 1004 aa13.57□□□□□ -0.24
VRK3-216ENST00000599342 RGPD2P0DJD1 1756 aa13.57□□□□□ -0.24
VRK3-216ENST00000599342 DCAF8L1A6NGE4 600 aa13.56□□□□□ -0.24
VRK3-216ENST00000599342 HSP90AB2PQ58FF8 381 aa13.56□□□□□ -0.24
VRK3-216ENST00000599342 PDGFDQ9GZP0 370 aaPredicted RBP13.56□□□□□ -0.24
VRK3-216ENST00000599342 PAPPAQ13219 1627 aa13.55□□□□□ -0.24
VRK3-216ENST00000599342 TATP17735 454 aaPredicted RBP13.55□□□□□ -0.24
VRK3-216ENST00000599342 PRIM1P49642 420 aaKnown RBP13.55□□□□□ -0.24
VRK3-216ENST00000599342 EIF4G2P78344 907 aaKnown RBP eCLIP13.55□□□□□ -0.24
VRK3-216ENST00000599342 DOT1LQ8TEK3 1739 aa13.55□□□□□ -0.24
VRK3-216ENST00000599342 SHANK3Q9BYB0 1731 aa13.54□□□□□ -0.24
VRK3-216ENST00000599342 PPM1GO15355 546 aaPredicted RBP13.54□□□□□ -0.24
VRK3-216ENST00000599342 SLC27A3Q5K4L6 730 aa13.54□□□□□ -0.24
VRK3-216ENST00000599342 MTFR1LQ9H019 292 aa13.54□□□□□ -0.24
VRK3-216ENST00000599342 ATF5Q9Y2D1 282 aaPredicted RBP13.54□□□□□ -0.24
VRK3-216ENST00000599342 EMILIN1Q9Y6C2 1016 aa13.54□□□□□ -0.24
VRK3-216ENST00000599342 KAT6BQ8WYB5 2073 aa13.54□□□□□ -0.24
VRK3-216ENST00000599342 LRRC4BQ9NT99 713 aa13.53□□□□□ -0.24
VRK3-216ENST00000599342 PCDH11XQ9BZA7 1347 aa13.53□□□□□ -0.24
VRK3-216ENST00000599342 PCDH11YQ9BZA8 1340 aa13.53□□□□□ -0.24
VRK3-216ENST00000599342 PTGER2P43116 358 aa13.52□□□□□ -0.25
VRK3-216ENST00000599342 ZNF827Q17R98 1081 aa13.52□□□□□ -0.25
VRK3-216ENST00000599342 NSD2O96028 1365 aa13.51□□□□□ -0.25
VRK3-216ENST00000599342 HSPA5P11021 654 aaKnown RBP13.51□□□□□ -0.25
VRK3-216ENST00000599342 ANKRD26Q9UPS8 1709 aa13.5□□□□□ -0.25
VRK3-216ENST00000599342 WASHC2AQ641Q2 1341 aa13.49□□□□□ -0.25
VRK3-216ENST00000599342 AKT1S1Q96B36 256 aa13.49□□□□□ -0.25
VRK3-216ENST00000599342 TFCP2L1Q9NZI6 479 aa13.49□□□□□ -0.25
VRK3-216ENST00000599342 CCNL1Q9UK58 526 aaPredicted RBP13.49□□□□□ -0.25
VRK3-216ENST00000599342 TNNT2P45379 298 aaPredicted RBP13.48□□□□□ -0.25
VRK3-216ENST00000599342 KCNQ4P56696 695 aa13.48□□□□□ -0.25
VRK3-216ENST00000599342 FHDC1Q9C0D6 1143 aaPredicted RBP13.48□□□□□ -0.25
VRK3-216ENST00000599342 LY75O60449 1722 aa13.47□□□□□ -0.25
VRK3-216ENST00000599342 YY1P25490 414 aa13.47□□□□□ -0.25
VRK3-216ENST00000599342 POLKQ9UBT6 870 aa13.47□□□□□ -0.25
VRK3-216ENST00000599342 SPG7Q9UQ90 795 aa13.47□□□□□ -0.25
VRK3-216ENST00000599342 NCAPD2Q15021 1401 aa13.47□□□□□ -0.25
VRK3-216ENST00000599342 PNPLA7Q6ZV29 1317 aa13.46□□□□□ -0.25
VRK3-216ENST00000599342 CYP27B1O15528 508 aa13.46□□□□□ -0.25
VRK3-216ENST00000599342 HMGB2P26583 209 aaKnown RBP13.46□□□□□ -0.25
VRK3-216ENST00000599342 MPRIPQ6WCQ1 1025 aa13.46□□□□□ -0.25
VRK3-216ENST00000599342 SLC16A10Q8TF71 515 aa13.46□□□□□ -0.25
VRK3-216ENST00000599342 ARXQ96QS3 562 aa13.46□□□□□ -0.25
VRK3-216ENST00000599342 SGIP1Q9BQI5 828 aa13.46□□□□□ -0.25
VRK3-216ENST00000599342 PANK3Q9H999 370 aa13.46□□□□□ -0.25
VRK3-216ENST00000599342 QSER1Q2KHR3 1735 aa13.46□□□□□ -0.25
VRK3-216ENST00000599342 PKD1L3Q7Z443 1732 aa13.46□□□□□ -0.25
VRK3-216ENST00000599342 POLD1P28340 1107 aa13.45□□□□□ -0.26
VRK3-216ENST00000599342 EYA1Q99502 592 aa13.45□□□□□ -0.26
VRK3-216ENST00000599342 SYT17Q9BSW7 474 aa13.45□□□□□ -0.26
VRK3-216ENST00000599342 MAP2P11137 1827 aaKnown RBP13.45□□□□□ -0.26
VRK3-216ENST00000599342 PALLDQ8WX93 1383 aa13.45□□□□□ -0.26
VRK3-216ENST00000599342 MSH5O43196 834 aa13.43□□□□□ -0.26
VRK3-216ENST00000599342 EIF4A2Q14240 407 aaKnown RBP13.43□□□□□ -0.26
VRK3-216ENST00000599342 SMARCC1Q92922 1105 aaPredicted RBP13.43□□□□□ -0.26
VRK3-216ENST00000599342 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.43□□□□□ -0.261e-7■■□□□ 12.1
VRK3-216ENST00000599342 TOGARAM1Q9Y4F4 1720 aa13.42□□□□□ -0.26
VRK3-216ENST00000599342 TUBGCP6Q96RT7 1819 aa13.42□□□□□ -0.26
VRK3-216ENST00000599342 KLHL34Q8N239 644 aa13.42□□□□□ -0.26
VRK3-216ENST00000599342 MAP3K5Q99683 1374 aa13.42□□□□□ -0.26
VRK3-216ENST00000599342 C5P01031 1676 aa13.41□□□□□ -0.26
VRK3-216ENST00000599342 NKX1-1Q15270 411 aaPredicted RBP13.41□□□□□ -0.26
VRK3-216ENST00000599342 MORC1Q86VD1 984 aa13.41□□□□□ -0.26
VRK3-216ENST00000599342 IFNL2Q8IZJ0 200 aa13.41□□□□□ -0.26
VRK3-216ENST00000599342 KNSTRNQ9Y448 316 aa13.41□□□□□ -0.26
VRK3-216ENST00000599342 TMOD3Q9NYL9 352 aa13.4□□□□□ -0.26
VRK3-216ENST00000599342 PLEKHG2Q9H7P9 1386 aa13.4□□□□□ -0.26
VRK3-216ENST00000599342 IGSF1Q8N6C5 1336 aa13.39□□□□□ -0.27
VRK3-216ENST00000599342 ITGB4P16144 1822 aa13.39□□□□□ -0.27
VRK3-216ENST00000599342 PHKG2P15735 406 aa13.39□□□□□ -0.27
VRK3-216ENST00000599342 COL23A1Q86Y22 540 aaPredicted RBP13.39□□□□□ -0.27
VRK3-216ENST00000599342 FLAD1Q8NFF5 587 aa13.39□□□□□ -0.27
VRK3-216ENST00000599342 PIGBQ92521 554 aa13.39□□□□□ -0.27
VRK3-216ENST00000599342 AK7Q96M32 723 aa13.39□□□□□ -0.27
VRK3-216ENST00000599342 COL24A1Q17RW2 1714 aa13.37□□□□□ -0.27
VRK3-216ENST00000599342 C4BP0C0L5 1744 aa13.36□□□□□ -0.27
VRK3-216ENST00000599342 LOC102724428A0A0B4J2F2 783 aa13.36□□□□□ -0.27
VRK3-216ENST00000599342 HSP90AB1P08238 724 aaKnown RBP13.36□□□□□ -0.27
VRK3-216ENST00000599342 SIK1P57059 783 aa13.36□□□□□ -0.27
VRK3-216ENST00000599342 GPR162Q16538 588 aa13.36□□□□□ -0.27
VRK3-216ENST00000599342 PLEKHO1Q53GL0 409 aaPredicted RBP13.36□□□□□ -0.27
VRK3-216ENST00000599342 MSL1Q68DK7 614 aa13.36□□□□□ -0.27
VRK3-216ENST00000599342 TAF1LQ8IZX4 1826 aa13.36□□□□□ -0.27
VRK3-216ENST00000599342 KIF7Q2M1P5 1343 aa13.36□□□□□ -0.27
VRK3-216ENST00000599342 PHF14O94880 888 aa13.35□□□□□ -0.27
VRK3-216ENST00000599342 AMOTQ4VCS5 1084 aa13.35□□□□□ -0.27
VRK3-216ENST00000599342 PELP1Q8IZL8 1130 aaKnown RBP13.35□□□□□ -0.27
VRK3-216ENST00000599342 ATP6V1AP38606 617 aa13.34□□□□□ -0.27
VRK3-216ENST00000599342 ZNF530Q6P9A1 599 aaPredicted RBP13.34□□□□□ -0.27
VRK3-216ENST00000599342 DCAF5Q96JK2 942 aa13.34□□□□□ -0.27
VRK3-216ENST00000599342 ASAP1Q9ULH1 1129 aa13.34□□□□□ -0.27
VRK3-216ENST00000599342 ERVV-2B6SEH9 535 aa13.33□□□□□ -0.28
VRK3-216ENST00000599342 AMER1Q5JTC6 1135 aaPredicted RBP13.33□□□□□ -0.28
VRK3-216ENST00000599342 C1orf141Q5JVX7 400 aa13.33□□□□□ -0.28
VRK3-216ENST00000599342 LINC00116Q8NCU8 138 aa13.33□□□□□ -0.28
VRK3-216ENST00000599342 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.32□□□□□ -0.28
VRK3-216ENST00000599342 SSFA2P28290 1259 aa13.32□□□□□ -0.28
VRK3-216ENST00000599342 SULT6B1Q6IMI4 303 aa13.32□□□□□ -0.28
VRK3-216ENST00000599342 AEBP1Q8IUX7 1158 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms