RNA–Protein interactions for RNA: ENST00000599322.5

LIG1-218, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-218ENST00000599322 NBPF6Q5VWK0 638 aa19.28■□□□□ 0.68
LIG1-218ENST00000599322 PROM2Q8N271 834 aa19.28■□□□□ 0.68
LIG1-218ENST00000599322 NBPF4Q96M43 638 aa19.28■□□□□ 0.68
LIG1-218ENST00000599322 WASHC2AQ641Q2 1341 aa19.27■□□□□ 0.68
LIG1-218ENST00000599322 BTAF1O14981 1849 aa19.26■□□□□ 0.67
LIG1-218ENST00000599322 KCNQ2O43526 872 aa19.26■□□□□ 0.67
LIG1-218ENST00000599322 POLKQ9UBT6 870 aa19.26■□□□□ 0.67
LIG1-218ENST00000599322 USHBP1Q8N6Y0 703 aa19.25■□□□□ 0.67
LIG1-218ENST00000599322 ACSBG1Q96GR2 724 aa19.25■□□□□ 0.67
LIG1-218ENST00000599322 SPON1Q9HCB6 807 aa19.25■□□□□ 0.67
LIG1-218ENST00000599322 RGPD2P0DJD1 1756 aa19.24■□□□□ 0.67
LIG1-218ENST00000599322 PDGFDQ9GZP0 370 aaPredicted RBP19.23■□□□□ 0.67
LIG1-218ENST00000599322 SYTL4Q96C24 671 aaPredicted RBP19.22■□□□□ 0.67
LIG1-218ENST00000599322 TXNRD1Q16881 649 aa19.21■□□□□ 0.67
LIG1-218ENST00000599322 SPG7Q9UQ90 795 aa19.21■□□□□ 0.67
LIG1-218ENST00000599322 PAPPAQ13219 1627 aa19.21■□□□□ 0.67
LIG1-218ENST00000599322 PPP1R1BQ9UD71 204 aaPredicted RBP19.2■□□□□ 0.66
LIG1-218ENST00000599322 PCDH11XQ9BZA7 1347 aa19.2■□□□□ 0.66
LIG1-218ENST00000599322 PCDH11YQ9BZA8 1340 aa19.2■□□□□ 0.66
LIG1-218ENST00000599322 ANKRD26Q9UPS8 1709 aa19.2■□□□□ 0.66
LIG1-218ENST00000599322 MAP2P11137 1827 aaKnown RBP19.19■□□□□ 0.66
LIG1-218ENST00000599322 SHANK3Q9BYB0 1731 aa19.19■□□□□ 0.66
LIG1-218ENST00000599322 EYA1Q99502 592 aa19.18■□□□□ 0.66
LIG1-218ENST00000599322 HMGB2P26583 209 aaKnown RBP19.17■□□□□ 0.66
LIG1-218ENST00000599322 EIF4A2Q14240 407 aaKnown RBP19.17■□□□□ 0.66
LIG1-218ENST00000599322 AMER1Q5JTC6 1135 aaPredicted RBP19.17■□□□□ 0.66
LIG1-218ENST00000599322 MEGF6O75095 1541 aa19.16■□□□□ 0.66
LIG1-218ENST00000599322 CC2D1BQ5T0F9 858 aaKnown RBP19.16■□□□□ 0.66
LIG1-218ENST00000599322 STK32BQ9NY57 414 aa19.16■□□□□ 0.66
LIG1-218ENST00000599322 ZBTB7AO95365 584 aa19.15■□□□□ 0.66
LIG1-218ENST00000599322 PRIM1P49642 420 aaKnown RBP19.15■□□□□ 0.66
LIG1-218ENST00000599322 CNGB1Q14028 1251 aaPredicted RBP19.15■□□□□ 0.66
LIG1-218ENST00000599322 SLC15A2Q16348 729 aa19.15■□□□□ 0.66
LIG1-218ENST00000599322 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.15■□□□□ 0.66
LIG1-218ENST00000599322 QSER1Q2KHR3 1735 aa19.14■□□□□ 0.66
LIG1-218ENST00000599322 DOT1LQ8TEK3 1739 aa19.14■□□□□ 0.66
LIG1-218ENST00000599322 TUBGCP6Q96RT7 1819 aa19.14■□□□□ 0.65
LIG1-218ENST00000599322 PER1O15534 1290 aaPredicted RBP19.14■□□□□ 0.65
LIG1-218ENST00000599322 PTGER2P43116 358 aa19.14■□□□□ 0.65
LIG1-218ENST00000599322 ATF5Q9Y2D1 282 aaPredicted RBP19.12■□□□□ 0.65
LIG1-218ENST00000599322 LY75O60449 1722 aa19.11■□□□□ 0.65
LIG1-218ENST00000599322 YY1P25490 414 aa19.11■□□□□ 0.65
LIG1-218ENST00000599322 MTHFSP49914 203 aa19.11■□□□□ 0.65
LIG1-218ENST00000599322 PLEKHO1Q53GL0 409 aaPredicted RBP19.11■□□□□ 0.65
LIG1-218ENST00000599322 IFNL2Q8IZJ0 200 aa19.11■□□□□ 0.65
LIG1-218ENST00000599322 NPC1L1Q9UHC9 1359 aa19.1■□□□□ 0.65
LIG1-218ENST00000599322 SLC27A3Q5K4L6 730 aa19.1■□□□□ 0.65
LIG1-218ENST00000599322 PLEKHG2Q9H7P9 1386 aa19.09■□□□□ 0.65
LIG1-218ENST00000599322 COL24A1Q17RW2 1714 aa19.09■□□□□ 0.65
LIG1-218ENST00000599322 IGSF1Q8N6C5 1336 aa19.09■□□□□ 0.65
LIG1-218ENST00000599322 AMOTQ4VCS5 1084 aa19.09■□□□□ 0.65
LIG1-218ENST00000599322 CHD4Q14839 1912 aa19.08■□□□□ 0.65
LIG1-218ENST00000599322 CYP27B1O15528 508 aa19.08■□□□□ 0.64
LIG1-218ENST00000599322 HSP90AB1P08238 724 aaKnown RBP19.08■□□□□ 0.64
LIG1-218ENST00000599322 MPRIPQ6WCQ1 1025 aa19.08■□□□□ 0.64
LIG1-218ENST00000599322 SGIP1Q9BQI5 828 aa19.08■□□□□ 0.64
LIG1-218ENST00000599322 SMARCC1Q92922 1105 aaPredicted RBP19.07■□□□□ 0.64
LIG1-218ENST00000599322 CFAP53Q96M91 514 aa19.07■□□□□ 0.64
LIG1-218ENST00000599322 LRRC4BQ9NT99 713 aa19.07■□□□□ 0.64
LIG1-218ENST00000599322 NCAPD2Q15021 1401 aa19.07■□□□□ 0.64
LIG1-218ENST00000599322 DIAPH1O60610 1272 aaKnown RBP19.06■□□□□ 0.64
LIG1-218ENST00000599322 ZNF827Q17R98 1081 aa19.06■□□□□ 0.64
LIG1-218ENST00000599322 C1orf141Q5JVX7 400 aa19.06■□□□□ 0.64
LIG1-218ENST00000599322 SULT6B1Q6IMI4 303 aa19.06■□□□□ 0.64
LIG1-218ENST00000599322 MTFR1LQ9H019 292 aa19.06■□□□□ 0.64
LIG1-218ENST00000599322 NKX1-1Q15270 411 aaPredicted RBP19.05■□□□□ 0.64
LIG1-218ENST00000599322 DCAF8L1A6NGE4 600 aa19.04■□□□□ 0.64
LIG1-218ENST00000599322 PHKG2P15735 406 aa19.04■□□□□ 0.64
LIG1-218ENST00000599322 IL13P35225 146 aa19.04■□□□□ 0.64
LIG1-218ENST00000599322 FHDC1Q9C0D6 1143 aaPredicted RBP19.04■□□□□ 0.64
LIG1-218ENST00000599322 TMOD3Q9NYL9 352 aa19.04■□□□□ 0.64
LIG1-218ENST00000599322 CCNL1Q9UK58 526 aaPredicted RBP19.04■□□□□ 0.64
LIG1-218ENST00000599322 ZEB1P37275 1124 aaPredicted RBP19.03■□□□□ 0.64
LIG1-218ENST00000599322 ZNF530Q6P9A1 599 aaPredicted RBP19.03■□□□□ 0.64
LIG1-218ENST00000599322 SYT17Q9BSW7 474 aa19.03■□□□□ 0.64
LIG1-218ENST00000599322 UTRNP46939 3433 aa19.02■□□□□ 0.63
LIG1-218ENST00000599322 AKT1S1Q96B36 256 aa19.01■□□□□ 0.63
LIG1-218ENST00000599322 DCAF5Q96JK2 942 aa19.01■□□□□ 0.63
LIG1-218ENST00000599322 NUDCQ9Y266 331 aa19.01■□□□□ 0.63
LIG1-218ENST00000599322 U2SURPO15042 1029 aaKnown RBP19■□□□□ 0.63
LIG1-218ENST00000599322 TFCP2L1Q9NZI6 479 aa19■□□□□ 0.63
LIG1-218ENST00000599322 ITGB4P16144 1822 aa19■□□□□ 0.63
LIG1-218ENST00000599322 TAF1LQ8IZX4 1826 aa19■□□□□ 0.63
LIG1-218ENST00000599322 PKD1L3Q7Z443 1732 aa19■□□□□ 0.63
LIG1-218ENST00000599322 ERVV-2B6SEH9 535 aa18.99■□□□□ 0.63
LIG1-218ENST00000599322 AEBP1Q8IUX7 1158 aa18.99■□□□□ 0.63
LIG1-218ENST00000599322 PALLDQ8WX93 1383 aa18.98■□□□□ 0.63
LIG1-218ENST00000599322 HMOX1P09601 288 aa18.98■□□□□ 0.63
LIG1-218ENST00000599322 KCNQ4P56696 695 aa18.98■□□□□ 0.63
LIG1-218ENST00000599322 CABP4P57796 275 aa18.98■□□□□ 0.63
LIG1-218ENST00000599322 TOGARAM1Q9Y4F4 1720 aa18.97■□□□□ 0.63
LIG1-218ENST00000599322 PIGBQ92521 554 aa18.97■□□□□ 0.63
LIG1-218ENST00000599322 ARXQ96QS3 562 aa18.97■□□□□ 0.63
LIG1-218ENST00000599322 C5P01031 1676 aa18.97■□□□□ 0.63
LIG1-218ENST00000599322 PNPLA7Q6ZV29 1317 aa18.97■□□□□ 0.63
LIG1-218ENST00000599322 KDRP35968 1356 aa18.96■□□□□ 0.63
LIG1-218ENST00000599322 MAP3K5Q99683 1374 aa18.96■□□□□ 0.63
LIG1-218ENST00000599322 MSH5O43196 834 aa18.95■□□□□ 0.62
LIG1-218ENST00000599322 SLC16A10Q8TF71 515 aa18.95■□□□□ 0.62
LIG1-218ENST00000599322 AKAP4Q5JQC9 854 aa18.94■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms