RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 EP400Q96L91 3159 aa19.18■□□□□ 0.66
SHKBP1-217ENST00000598558 DEFB132Q7Z7B7 95 aa19.18■□□□□ 0.66
SHKBP1-217ENST00000598558 CYP27B1O15528 508 aa19.17■□□□□ 0.66
SHKBP1-217ENST00000598558 KCNQ2O43526 872 aa19.17■□□□□ 0.66
SHKBP1-217ENST00000598558 RALBP1Q15311 655 aa19.17■□□□□ 0.66
SHKBP1-217ENST00000598558 HMOX1P09601 288 aa19.16■□□□□ 0.66
SHKBP1-217ENST00000598558 CCDC125Q86Z20 511 aa19.15■□□□□ 0.66
SHKBP1-217ENST00000598558 ACSBG1Q96GR2 724 aa19.15■□□□□ 0.66
SHKBP1-217ENST00000598558 PRKRIP1Q9H875 184 aaPredicted RBP19.15■□□□□ 0.66
SHKBP1-217ENST00000598558 KDRP35968 1356 aa19.15■□□□□ 0.66
SHKBP1-217ENST00000598558 BCL9O00512 1426 aa19.15■□□□□ 0.66
SHKBP1-217ENST00000598558 RGPD1P0DJD0 1748 aa19.14■□□□□ 0.66
SHKBP1-217ENST00000598558 U2SURPO15042 1029 aaKnown RBP19.13■□□□□ 0.65
SHKBP1-217ENST00000598558 CFAP53Q96M91 514 aa19.12■□□□□ 0.65
SHKBP1-217ENST00000598558 EN1Q05925 392 aaPredicted RBP19.11■□□□□ 0.65
SHKBP1-217ENST00000598558 BCL11BQ9C0K0 894 aaPredicted RBP19.11■□□□□ 0.65
SHKBP1-217ENST00000598558 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.11■□□□□ 0.65
SHKBP1-217ENST00000598558 SHANK3Q9BYB0 1731 aa19.11■□□□□ 0.65
SHKBP1-217ENST00000598558 APBA3O96018 575 aa19.1■□□□□ 0.65
SHKBP1-217ENST00000598558 SPG7Q9UQ90 795 aa19.1■□□□□ 0.65
SHKBP1-217ENST00000598558 MYBBP1AQ9BQG0 1328 aaKnown RBP19.09■□□□□ 0.65
SHKBP1-217ENST00000598558 PCDH11XQ9BZA7 1347 aa19.09■□□□□ 0.65
SHKBP1-217ENST00000598558 PCDH11YQ9BZA8 1340 aa19.09■□□□□ 0.65
SHKBP1-217ENST00000598558 PHKG2P15735 406 aa19.09■□□□□ 0.65
SHKBP1-217ENST00000598558 PRIM1P49642 420 aaKnown RBP19.09■□□□□ 0.65
SHKBP1-217ENST00000598558 SF3B2Q13435 895 aaKnown RBP19.08■□□□□ 0.64
SHKBP1-217ENST00000598558 NKX1-1Q15270 411 aaPredicted RBP19.08■□□□□ 0.64
SHKBP1-217ENST00000598558 EZH2Q15910 746 aaKnown RBP19.08■□□□□ 0.64
SHKBP1-217ENST00000598558 PLEKHO1Q53GL0 409 aaPredicted RBP19.08■□□□□ 0.64
SHKBP1-217ENST00000598558 CAMKK2Q96RR4 588 aa19.08■□□□□ 0.64
SHKBP1-217ENST00000598558 RSPH6AQ9H0K4 717 aa19.07■□□□□ 0.64
SHKBP1-217ENST00000598558 U2AF1L5P0DN76 240 aaPredicted RBP19.06■□□□□ 0.64
SHKBP1-217ENST00000598558 BAG6P46379 1132 aa19.06■□□□□ 0.64
SHKBP1-217ENST00000598558 U2AF1Q01081 240 aaKnown RBP eCLIP19.06■□□□□ 0.64
SHKBP1-217ENST00000598558 CCDC184Q52MB2 194 aa19.06■□□□□ 0.64
SHKBP1-217ENST00000598558 PHACTR3Q96KR7 559 aa19.06■□□□□ 0.64
SHKBP1-217ENST00000598558 PKD1L3Q7Z443 1732 aa19.05■□□□□ 0.64
SHKBP1-217ENST00000598558 TNS1Q9HBL0 1735 aaKnown RBP19.05■□□□□ 0.64
SHKBP1-217ENST00000598558 MTHFSDQ2M296 383 aaKnown RBP19.05■□□□□ 0.64
SHKBP1-217ENST00000598558 AMOTQ4VCS5 1084 aa19.05■□□□□ 0.64
SHKBP1-217ENST00000598558 ZNF530Q6P9A1 599 aaPredicted RBP19.05■□□□□ 0.64
SHKBP1-217ENST00000598558 IFNL2Q8IZJ0 200 aa19.05■□□□□ 0.64
SHKBP1-217ENST00000598558 PROM2Q8N271 834 aa19.05■□□□□ 0.64
SHKBP1-217ENST00000598558 NUDCQ9Y266 331 aa19.05■□□□□ 0.64
SHKBP1-217ENST00000598558 PLEKHG2Q9H7P9 1386 aa19.04■□□□□ 0.64
SHKBP1-217ENST00000598558 PRKAR2BP31323 418 aa19.03■□□□□ 0.64
SHKBP1-217ENST00000598558 SYTL4Q96C24 671 aaPredicted RBP19.03■□□□□ 0.64
SHKBP1-217ENST00000598558 SBF2Q86WG5 1849 aa19.02■□□□□ 0.64
SHKBP1-217ENST00000598558 PLSCR1O15162 318 aa19.02■□□□□ 0.64
SHKBP1-217ENST00000598558 MPRIPQ6WCQ1 1025 aa19.01■□□□□ 0.63
SHKBP1-217ENST00000598558 FCHSD2O94868 740 aa19■□□□□ 0.63
SHKBP1-217ENST00000598558 PIGBQ92521 554 aa19■□□□□ 0.63
SHKBP1-217ENST00000598558 LGR6Q9HBX8 967 aa19■□□□□ 0.63
SHKBP1-217ENST00000598558 KDM6AO15550 1401 aaPredicted RBP19■□□□□ 0.63
SHKBP1-217ENST00000598558 NHSQ6T4R5 1651 aa18.99■□□□□ 0.63
SHKBP1-217ENST00000598558 PLEKHF1Q96S99 279 aa18.99■□□□□ 0.63
SHKBP1-217ENST00000598558 AKAP4Q5JQC9 854 aa18.98■□□□□ 0.63
SHKBP1-217ENST00000598558 TOGARAM1Q9Y4F4 1720 aa18.97■□□□□ 0.63
SHKBP1-217ENST00000598558 C1orf141Q5JVX7 400 aa18.97■□□□□ 0.63
SHKBP1-217ENST00000598558 DCAF5Q96JK2 942 aa18.97■□□□□ 0.63
SHKBP1-217ENST00000598558 DOT1LQ8TEK3 1739 aa18.97■□□□□ 0.63
SHKBP1-217ENST00000598558 ANP32CO43423 234 aa18.96■□□□□ 0.63
SHKBP1-217ENST00000598558 KCNQ4P56696 695 aa18.96■□□□□ 0.63
SHKBP1-217ENST00000598558 TXNRD1Q16881 649 aa18.96■□□□□ 0.63
SHKBP1-217ENST00000598558 RNMTO43148 476 aaKnown RBP18.95■□□□□ 0.62
SHKBP1-217ENST00000598558 HSP90AB1P08238 724 aaKnown RBP18.95■□□□□ 0.62
SHKBP1-217ENST00000598558 LRRC4BQ9NT99 713 aa18.95■□□□□ 0.62
SHKBP1-217ENST00000598558 ERVV-2B6SEH9 535 aa18.94■□□□□ 0.62
SHKBP1-217ENST00000598558 IL17REQ8NFR9 667 aa18.94■□□□□ 0.62
SHKBP1-217ENST00000598558 ASAP1Q9ULH1 1129 aa18.94■□□□□ 0.62
SHKBP1-217ENST00000598558 ADAMTS8Q9UP79 889 aa18.94■□□□□ 0.62
SHKBP1-217ENST00000598558 NFATC2IPQ8NCF5 419 aa18.92■□□□□ 0.62
SHKBP1-217ENST00000598558 GAS2L2Q8NHY3 880 aa18.92■□□□□ 0.62
SHKBP1-217ENST00000598558 ATG3Q9NT62 314 aa18.92■□□□□ 0.62
SHKBP1-217ENST00000598558 TMOD3Q9NYL9 352 aa18.92■□□□□ 0.62
SHKBP1-217ENST00000598558 BTAF1O14981 1849 aa18.92■□□□□ 0.62
SHKBP1-217ENST00000598558 CABP4P57796 275 aa18.91■□□□□ 0.62
SHKBP1-217ENST00000598558 ANO8Q9HCE9 1232 aaPredicted RBP18.91■□□□□ 0.62
SHKBP1-217ENST00000598558 GNAT3A8MTJ3 354 aa18.9■□□□□ 0.62
SHKBP1-217ENST00000598558 CCDC146Q8IYE0 955 aa18.9■□□□□ 0.62
SHKBP1-217ENST00000598558 MAP3K5Q99683 1374 aa18.9■□□□□ 0.62
SHKBP1-217ENST00000598558 DCTN1Q14203 1278 aa18.89■□□□□ 0.61
SHKBP1-217ENST00000598558 PSDA5PKW4 1024 aaPredicted RBP18.88■□□□□ 0.61
SHKBP1-217ENST00000598558 WDR43Q15061 677 aaKnown RBP eCLIP18.88■□□□□ 0.61
SHKBP1-217ENST00000598558 SLC4A9Q96Q91 983 aa18.88■□□□□ 0.61
SHKBP1-217ENST00000598558 SLC52A2Q9HAB3 445 aa18.88■□□□□ 0.61
SHKBP1-217ENST00000598558 PALLDQ8WX93 1383 aa18.88■□□□□ 0.61
SHKBP1-217ENST00000598558 RREB1Q92766 1687 aa18.88■□□□□ 0.61
SHKBP1-217ENST00000598558 R3HDM1Q15032 1099 aaKnown RBP18.87■□□□□ 0.61
SHKBP1-217ENST00000598558 MCM10Q7L590 875 aa18.87■□□□□ 0.61
SHKBP1-217ENST00000598558 PNISRQ8TF01 805 aaKnown RBP18.87■□□□□ 0.61
SHKBP1-217ENST00000598558 NFE2L2Q16236 605 aa18.86■□□□□ 0.61
SHKBP1-217ENST00000598558 MRS2Q9HD23 443 aa18.86■□□□□ 0.61
SHKBP1-217ENST00000598558 ITGB4P16144 1822 aa18.86■□□□□ 0.61
SHKBP1-217ENST00000598558 CEMIPQ8WUJ3 1361 aa18.85■□□□□ 0.61
SHKBP1-217ENST00000598558 SLC39A6Q13433 755 aa18.85■□□□□ 0.61
SHKBP1-217ENST00000598558 ZNF827Q17R98 1081 aa18.85■□□□□ 0.61
SHKBP1-217ENST00000598558 SLC27A3Q5K4L6 730 aa18.85■□□□□ 0.61
SHKBP1-217ENST00000598558 SMARCC1Q92922 1105 aaPredicted RBP18.85■□□□□ 0.61
SHKBP1-217ENST00000598558 CCNL1Q9UK58 526 aaPredicted RBP18.85■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms