RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 GOLGA2Q08379 1002 aa20.24■□□□□ 0.83
UPF1-206ENST00000598471 AMOTQ4VCS5 1084 aa20.24■□□□□ 0.83
UPF1-206ENST00000598471 PLEKHO1Q53GL0 409 aaPredicted RBP20.24■□□□□ 0.83
UPF1-206ENST00000598471 WWC1Q8IX03 1113 aa20.24■□□□□ 0.83
UPF1-206ENST00000598471 NWD2Q9ULI1 1742 aa20.24■□□□□ 0.83
UPF1-206ENST00000598471 UNC5CLQ8IV45 518 aa20.23■□□□□ 0.83
UPF1-206ENST00000598471 WDR63Q8IWG1 891 aa20.23■□□□□ 0.83
UPF1-206ENST00000598471 BCL9LQ86UU0 1499 aa20.23■□□□□ 0.83
UPF1-206ENST00000598471 CALD1Q05682 793 aaKnown RBP20.22■□□□□ 0.83
UPF1-206ENST00000598471 LARP1Q6PKG0 1096 aaKnown RBP20.22■□□□□ 0.83
UPF1-206ENST00000598471 SLIT2O94813 1529 aa20.22■□□□□ 0.83
UPF1-206ENST00000598471 MTHFSDQ2M296 383 aaKnown RBP20.21■□□□□ 0.83
UPF1-206ENST00000598471 NRAPQ86VF7 1730 aa20.2■□□□□ 0.82
UPF1-206ENST00000598471 RTF1Q92541 710 aaKnown RBP20.2■□□□□ 0.82
UPF1-206ENST00000598471 TRIM35Q9UPQ4 493 aa20.2■□□□□ 0.82
UPF1-206ENST00000598471 E9PSI1 815 aa20.19■□□□□ 0.82
UPF1-206ENST00000598471 HTATSF1O43719 755 aaKnown RBP20.19■□□□□ 0.82
UPF1-206ENST00000598471 RXRBP28702 533 aa20.19■□□□□ 0.82
UPF1-206ENST00000598471 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.19■□□□□ 0.82
UPF1-206ENST00000598471 TRPC5Q9UL62 973 aaPredicted RBP20.19■□□□□ 0.82
UPF1-206ENST00000598471 SPG7Q9UQ90 795 aa20.19■□□□□ 0.82
UPF1-206ENST00000598471 MEGF6O75095 1541 aa20.18■□□□□ 0.82
UPF1-206ENST00000598471 IL16Q14005 1332 aa20.18■□□□□ 0.82
UPF1-206ENST00000598471 PARP4Q9UKK3 1724 aaKnown RBP20.18■□□□□ 0.82
UPF1-206ENST00000598471 MAP3K5Q99683 1374 aa20.18■□□□□ 0.82
UPF1-206ENST00000598471 GNAT3A8MTJ3 354 aa20.17■□□□□ 0.82
UPF1-206ENST00000598471 IL2RBP14784 551 aa20.17■□□□□ 0.82
UPF1-206ENST00000598471 C1orf141Q5JVX7 400 aa20.17■□□□□ 0.82
UPF1-206ENST00000598471 ZNF530Q6P9A1 599 aaPredicted RBP20.17■□□□□ 0.82
UPF1-206ENST00000598471 OVOS2A0A0G2JMS6 1433 aa20.17■□□□□ 0.82
UPF1-206ENST00000598471 DLG5Q8TDM6 1919 aa20.16■□□□□ 0.82
UPF1-206ENST00000598471 SLFN5Q08AF3 891 aa20.16■□□□□ 0.82
UPF1-206ENST00000598471 MYH16Q9H6N6 1097 aa20.16■□□□□ 0.82
UPF1-206ENST00000598471 RBM6P78332 1123 aaKnown RBP20.15■□□□□ 0.82
UPF1-206ENST00000598471 AKAP4Q5JQC9 854 aa20.15■□□□□ 0.82
UPF1-206ENST00000598471 CDCA7LQ96GN5 454 aa20.15■□□□□ 0.82
UPF1-206ENST00000598471 GJD4Q96KN9 370 aaPredicted RBP20.15■□□□□ 0.82
UPF1-206ENST00000598471 ATRNO75882 1429 aa20.14■□□□□ 0.81
UPF1-206ENST00000598471 VPS72Q15906 364 aa20.14■□□□□ 0.81
UPF1-206ENST00000598471 USP35Q9P2H5 1018 aa20.14■□□□□ 0.81
UPF1-206ENST00000598471 THRAP3Q9Y2W1 955 aaKnown RBP20.14■□□□□ 0.81
UPF1-206ENST00000598471 CDCA7Q9BWT1 371 aaPredicted RBP20.13■□□□□ 0.81
UPF1-206ENST00000598471 CCDC9Q9Y3X0 531 aaKnown RBP20.13■□□□□ 0.81
UPF1-206ENST00000598471 PKD1L3Q7Z443 1732 aa20.13■□□□□ 0.81
UPF1-206ENST00000598471 SPATA31A1Q5TZJ5 1347 aa20.12■□□□□ 0.81
UPF1-206ENST00000598471 TNKS1BP1Q9C0C2 1729 aaKnown RBP20.12■□□□□ 0.81
UPF1-206ENST00000598471 SPATA31A5Q5VU36 1347 aa20.11■□□□□ 0.81
UPF1-206ENST00000598471 SPATA31A7Q8IWB4 1347 aa20.11■□□□□ 0.81
UPF1-206ENST00000598471 GNAI1P63096 354 aa20.11■□□□□ 0.81
UPF1-206ENST00000598471 ZCRB1Q8TBF4 217 aaKnown RBP20.11■□□□□ 0.81
UPF1-206ENST00000598471 PCDH11XQ9BZA7 1347 aa20.1■□□□□ 0.81
UPF1-206ENST00000598471 PCDH11YQ9BZA8 1340 aa20.1■□□□□ 0.81
UPF1-206ENST00000598471 HSP90AB1P08238 724 aaKnown RBP20.1■□□□□ 0.81
UPF1-206ENST00000598471 DUSP27Q5VZP5 1158 aa20.1■□□□□ 0.81
UPF1-206ENST00000598471 MCM10Q7L590 875 aa20.1■□□□□ 0.81
UPF1-206ENST00000598471 TRMT2AQ8IZ69 625 aaKnown RBP20.1■□□□□ 0.81
UPF1-206ENST00000598471 IFNL2Q8IZJ0 200 aa20.1■□□□□ 0.81
UPF1-206ENST00000598471 IFT57Q9NWB7 429 aa20.1■□□□□ 0.81
UPF1-206ENST00000598471 DISP2A7MBM2 1401 aa20.1■□□□□ 0.81
UPF1-206ENST00000598471 DCTN1Q14203 1278 aa20.09■□□□□ 0.81
UPF1-206ENST00000598471 THUMPD2Q9BTF0 503 aaKnown RBP20.09■□□□□ 0.81
UPF1-206ENST00000598471 SPINK5Q9NQ38 1064 aaPredicted RBP20.08■□□□□ 0.81
UPF1-206ENST00000598471 WNK3Q9BYP7 1800 aa20.07■□□□□ 0.8
UPF1-206ENST00000598471 LRRC37A3O60309 1634 aa20.07■□□□□ 0.8
UPF1-206ENST00000598471 PHKG2P15735 406 aa20.07■□□□□ 0.8
UPF1-206ENST00000598471 CFAP44Q96MT7 982 aa20.07■□□□□ 0.8
UPF1-206ENST00000598471 LAS1LQ9Y4W2 734 aaKnown RBP20.07■□□□□ 0.8
UPF1-206ENST00000598471 BARGINQ6ZT62 677 aa20.06■□□□□ 0.8
UPF1-206ENST00000598471 FANCIQ9NVI1 1328 aa20.05■□□□□ 0.8
UPF1-206ENST00000598471 IL17REQ8NFR9 667 aa20.05■□□□□ 0.8
UPF1-206ENST00000598471 CEMIPQ8WUJ3 1361 aa20.05■□□□□ 0.8
UPF1-206ENST00000598471 CYP27B1O15528 508 aa20.04■□□□□ 0.8
UPF1-206ENST00000598471 RNMTO43148 476 aaKnown RBP20.04■□□□□ 0.8
UPF1-206ENST00000598471 ONECUT3O60422 494 aaPredicted RBP20.04■□□□□ 0.8
UPF1-206ENST00000598471 ZNF853P0CG23 659 aa20.04■□□□□ 0.8
UPF1-206ENST00000598471 TEFQ10587 303 aa20.04■□□□□ 0.8
UPF1-206ENST00000598471 MPRIPQ6WCQ1 1025 aa20.04■□□□□ 0.8
UPF1-206ENST00000598471 DCAF5Q96JK2 942 aa20.04■□□□□ 0.8
UPF1-206ENST00000598471 TNS2Q63HR2 1409 aa20.03■□□□□ 0.8
UPF1-206ENST00000598471 EXOC5O00471 708 aa20.03■□□□□ 0.8
UPF1-206ENST00000598471 FAM98CQ17RN3 349 aaKnown RBP20.03■□□□□ 0.8
UPF1-206ENST00000598471 TSR2Q969E8 191 aaKnown RBP20.03■□□□□ 0.8
UPF1-206ENST00000598471 BABAM1Q9NWV8 329 aa20.03■□□□□ 0.8
UPF1-206ENST00000598471 TAF7Q15545 349 aaPredicted RBP20.02■□□□□ 0.8
UPF1-206ENST00000598471 SEPT12Q8IYM1 358 aa20.02■□□□□ 0.8
UPF1-206ENST00000598471 ADAMTS7Q9UKP4 1686 aa20.02■□□□□ 0.8
UPF1-206ENST00000598471 GLI3P10071 1580 aa20.01■□□□□ 0.79
UPF1-206ENST00000598471 DDX54Q8TDD1 881 aaKnown RBP20.01■□□□□ 0.79
UPF1-206ENST00000598471 LGR6Q9HBX8 967 aa20.01■□□□□ 0.79
UPF1-206ENST00000598471 CHL1O00533 1208 aa20■□□□□ 0.79
UPF1-206ENST00000598471 CT47B1P0C2W7 299 aaPredicted RBP20■□□□□ 0.79
UPF1-206ENST00000598471 DDB1Q16531 1140 aa20■□□□□ 0.79
UPF1-206ENST00000598471 MBIPQ9NS73 344 aa20■□□□□ 0.79
UPF1-206ENST00000598471 TSPYL4Q9UJ04 414 aa20■□□□□ 0.79
UPF1-206ENST00000598471 RCAN3Q9UKA8 241 aa20■□□□□ 0.79
UPF1-206ENST00000598471 RGS12O14924 1447 aa20■□□□□ 0.79
UPF1-206ENST00000598471 KDM6AO15550 1401 aaPredicted RBP20■□□□□ 0.79
UPF1-206ENST00000598471 SHANK3Q9BYB0 1731 aa19.99■□□□□ 0.79
UPF1-206ENST00000598471 NKX1-1Q15270 411 aaPredicted RBP19.99■□□□□ 0.79
UPF1-206ENST00000598471 SCN11AQ9UI33 1791 aa19.98■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 120 ms