RNA–Protein interactions for RNA: ENST00000596672.5

LIG1-213, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-213ENST00000596672 DOT1LQ8TEK3 1739 aa14.59□□□□□ -0.07
LIG1-213ENST00000596672 KCNQ4P56696 695 aa14.58□□□□□ -0.08
LIG1-213ENST00000596672 EIF4G2P78344 907 aaKnown RBP eCLIP14.58□□□□□ -0.08
LIG1-213ENST00000596672 NBPF14Q5TI25 921 aa14.58□□□□□ -0.08
LIG1-213ENST00000596672 POLR3GLQ9BT43 218 aa14.58□□□□□ -0.08
LIG1-213ENST00000596672 POLKQ9UBT6 870 aa14.58□□□□□ -0.08
LIG1-213ENST00000596672 NCAPD2Q15021 1401 aa14.58□□□□□ -0.08
LIG1-213ENST00000596672 PRIM1P49642 420 aaKnown RBP14.57□□□□□ -0.08
LIG1-213ENST00000596672 ZNF827Q17R98 1081 aa14.57□□□□□ -0.08
LIG1-213ENST00000596672 ZCRB1Q8TBF4 217 aaKnown RBP14.57□□□□□ -0.08
LIG1-213ENST00000596672 PANK3Q9H999 370 aa14.57□□□□□ -0.08
LIG1-213ENST00000596672 FLT4P35916 1363 aa14.57□□□□□ -0.08
LIG1-213ENST00000596672 TOGARAM1Q9Y4F4 1720 aa14.55□□□□□ -0.08
LIG1-213ENST00000596672 CYP27B1O15528 508 aa14.55□□□□□ -0.08
LIG1-213ENST00000596672 SLC15A2Q16348 729 aa14.55□□□□□ -0.08
LIG1-213ENST00000596672 TUBGCP6Q96RT7 1819 aa14.55□□□□□ -0.08
LIG1-213ENST00000596672 ZBTB7AO95365 584 aa14.54□□□□□ -0.08
LIG1-213ENST00000596672 PTGER2P43116 358 aa14.54□□□□□ -0.08
LIG1-213ENST00000596672 EYA1Q99502 592 aa14.54□□□□□ -0.08
LIG1-213ENST00000596672 WASHC2AQ641Q2 1341 aa14.54□□□□□ -0.08
LIG1-213ENST00000596672 KIF24Q5T7B8 1368 aa14.54□□□□□ -0.08
LIG1-213ENST00000596672 LY75O60449 1722 aa14.54□□□□□ -0.08
LIG1-213ENST00000596672 CGNL1Q0VF96 1302 aa14.53□□□□□ -0.08
LIG1-213ENST00000596672 TNNT2P45379 298 aaPredicted RBP14.53□□□□□ -0.08
LIG1-213ENST00000596672 SGIP1Q9BQI5 828 aa14.53□□□□□ -0.08
LIG1-213ENST00000596672 UTRNP46939 3433 aa14.53□□□□□ -0.08
LIG1-213ENST00000596672 PKD1L3Q7Z443 1732 aa14.52□□□□□ -0.08
LIG1-213ENST00000596672 PPM1GO15355 546 aaPredicted RBP14.52□□□□□ -0.09
LIG1-213ENST00000596672 AKT1S1Q96B36 256 aa14.52□□□□□ -0.09
LIG1-213ENST00000596672 ATF5Q9Y2D1 282 aaPredicted RBP14.52□□□□□ -0.09
LIG1-213ENST00000596672 ITGB4P16144 1822 aa14.52□□□□□ -0.09
LIG1-213ENST00000596672 EIF4A2Q14240 407 aaKnown RBP14.51□□□□□ -0.09
LIG1-213ENST00000596672 SPON1Q9HCB6 807 aa14.51□□□□□ -0.09
LIG1-213ENST00000596672 KIF7Q2M1P5 1343 aa14.5□□□□□ -0.09
LIG1-213ENST00000596672 STK32BQ9NY57 414 aa14.5□□□□□ -0.09
LIG1-213ENST00000596672 TATP17735 454 aaPredicted RBP14.49□□□□□ -0.09
LIG1-213ENST00000596672 RAPGEF4Q8WZA2 1011 aa14.49□□□□□ -0.09
LIG1-213ENST00000596672 SYTL4Q96C24 671 aaPredicted RBP14.49□□□□□ -0.09
LIG1-213ENST00000596672 SMG6Q86US8 1419 aaKnown RBP14.49□□□□□ -0.09
LIG1-213ENST00000596672 AMER1Q5JTC6 1135 aaPredicted RBP14.47□□□□□ -0.09
LIG1-213ENST00000596672 AMIGO3Q86WK7 504 aa14.47□□□□□ -0.09
LIG1-213ENST00000596672 COL24A1Q17RW2 1714 aa14.46□□□□□ -0.09
LIG1-213ENST00000596672 QSER1Q2KHR3 1735 aa14.46□□□□□ -0.09
LIG1-213ENST00000596672 PNPLA7Q6ZV29 1317 aa14.46□□□□□ -0.09
LIG1-213ENST00000596672 TAF1LQ8IZX4 1826 aa14.46□□□□□ -0.09
LIG1-213ENST00000596672 PER1O15534 1290 aaPredicted RBP14.46□□□□□ -0.09
LIG1-213ENST00000596672 NKX1-1Q15270 411 aaPredicted RBP14.45□□□□□ -0.1
LIG1-213ENST00000596672 SMIM5Q71RC9 77 aa14.45□□□□□ -0.1
LIG1-213ENST00000596672 IGSF1Q8N6C5 1336 aa14.44□□□□□ -0.1
LIG1-213ENST00000596672 PCDH11XQ9BZA7 1347 aa14.44□□□□□ -0.1
LIG1-213ENST00000596672 PCDH11YQ9BZA8 1340 aa14.44□□□□□ -0.1
LIG1-213ENST00000596672 SLC27A3Q5K4L6 730 aa14.44□□□□□ -0.1
LIG1-213ENST00000596672 AEBP1Q8IUX7 1158 aa14.44□□□□□ -0.1
LIG1-213ENST00000596672 PIGBQ92521 554 aa14.44□□□□□ -0.1
LIG1-213ENST00000596672 GOLGB1Q14789 3259 aaKnown RBP14.44□□□□□ -0.1
LIG1-213ENST00000596672 MPRIPQ6WCQ1 1025 aa14.43□□□□□ -0.1
LIG1-213ENST00000596672 MTFR1LQ9H019 292 aa14.43□□□□□ -0.1
LIG1-213ENST00000596672 PHKG2P15735 406 aa14.42□□□□□ -0.1
LIG1-213ENST00000596672 CCNL1Q9UK58 526 aaPredicted RBP14.42□□□□□ -0.1
LIG1-213ENST00000596672 C5P01031 1676 aa14.42□□□□□ -0.1
LIG1-213ENST00000596672 MORC1Q86VD1 984 aa14.41□□□□□ -0.1
LIG1-213ENST00000596672 COL23A1Q86Y22 540 aaPredicted RBP14.41□□□□□ -0.1
LIG1-213ENST00000596672 FHDC1Q9C0D6 1143 aaPredicted RBP14.41□□□□□ -0.1
LIG1-213ENST00000596672 PALLDQ8WX93 1383 aa14.4□□□□□ -0.1
LIG1-213ENST00000596672 IL13P35225 146 aa14.4□□□□□ -0.1
LIG1-213ENST00000596672 SYT17Q9BSW7 474 aa14.4□□□□□ -0.1
LIG1-213ENST00000596672 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.4□□□□□ -0.1
LIG1-213ENST00000596672 PPP1R1BQ9UD71 204 aaPredicted RBP14.4□□□□□ -0.1
LIG1-213ENST00000596672 SLC4A9Q96Q91 983 aa14.39□□□□□ -0.11
LIG1-213ENST00000596672 ASAP1Q9ULH1 1129 aa14.39□□□□□ -0.11
LIG1-213ENST00000596672 UBR3Q6ZT12 1888 aa14.38□□□□□ -0.11
LIG1-213ENST00000596672 SPG7Q9UQ90 795 aa14.38□□□□□ -0.11
LIG1-213ENST00000596672 KNSTRNQ9Y448 316 aa14.38□□□□□ -0.11
LIG1-213ENST00000596672 KDM6AO15550 1401 aaPredicted RBP14.38□□□□□ -0.11
LIG1-213ENST00000596672 ITPK1Q13572 414 aa14.37□□□□□ -0.11
LIG1-213ENST00000596672 TFCP2L1Q9NZI6 479 aa14.37□□□□□ -0.11
LIG1-213ENST00000596672 C4BP0C0L5 1744 aa14.37□□□□□ -0.11
LIG1-213ENST00000596672 MTHFSP49914 203 aa14.36□□□□□ -0.11
LIG1-213ENST00000596672 IFNL2Q8IZJ0 200 aa14.36□□□□□ -0.11
LIG1-213ENST00000596672 LINC00116Q8NCU8 138 aa14.36□□□□□ -0.11
LIG1-213ENST00000596672 ARXQ96QS3 562 aa14.36□□□□□ -0.11
LIG1-213ENST00000596672 ATG3Q9NT62 314 aa14.36□□□□□ -0.11
LIG1-213ENST00000596672 KDRP35968 1356 aa14.35□□□□□ -0.11
LIG1-213ENST00000596672 MYH14Q7Z406 1995 aaKnown RBP14.35□□□□□ -0.11
LIG1-213ENST00000596672 CC2D1BQ5T0F9 858 aaKnown RBP14.35□□□□□ -0.11
LIG1-213ENST00000596672 COL3A1P02461 1466 aaPredicted RBP14.34□□□□□ -0.11
LIG1-213ENST00000596672 MSL1Q68DK7 614 aa14.34□□□□□ -0.11
LIG1-213ENST00000596672 SULT6B1Q6IMI4 303 aa14.34□□□□□ -0.11
LIG1-213ENST00000596672 LOC102724428A0A0B4J2F2 783 aa14.33□□□□□ -0.12
LIG1-213ENST00000596672 SIK1P57059 783 aa14.33□□□□□ -0.12
LIG1-213ENST00000596672 NLGN2Q8NFZ4 835 aa14.33□□□□□ -0.12
LIG1-213ENST00000596672 SLC16A10Q8TF71 515 aa14.33□□□□□ -0.12
LIG1-213ENST00000596672 MAP3K5Q99683 1374 aa14.33□□□□□ -0.12
LIG1-213ENST00000596672 CNGB1Q14028 1251 aaPredicted RBP14.32□□□□□ -0.12
LIG1-213ENST00000596672 ZNF530Q6P9A1 599 aaPredicted RBP14.32□□□□□ -0.12
LIG1-213ENST00000596672 TMOD3Q9NYL9 352 aa14.32□□□□□ -0.12
LIG1-213ENST00000596672 VIRMAQ69YN4 1812 aaKnown RBP14.31□□□□□ -0.12
LIG1-213ENST00000596672 SMARCC1Q92922 1105 aaPredicted RBP14.31□□□□□ -0.12
LIG1-213ENST00000596672 SCN11AQ9UI33 1791 aa14.31□□□□□ -0.12
LIG1-213ENST00000596672 PLEKHG2Q9H7P9 1386 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms