RNA–Protein interactions for RNA: ENST00000596104.5

LIG1-209, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 531 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-209ENST00000596104 TFCP2L1Q9NZI6 479 aa14.06□□□□□ -0.16
LIG1-209ENST00000596104 RTL1A6NKG5 1358 aa14.06□□□□□ -0.16
LIG1-209ENST00000596104 GPR162Q16538 588 aa14.05□□□□□ -0.16
LIG1-209ENST00000596104 NBPF6Q5VWK0 638 aa14.05□□□□□ -0.16
LIG1-209ENST00000596104 NBPF4Q96M43 638 aa14.05□□□□□ -0.16
LIG1-209ENST00000596104 SLC24A1O60721 1099 aa14.04□□□□□ -0.16
LIG1-209ENST00000596104 C1QTNF8P60827 252 aa14.04□□□□□ -0.16
LIG1-209ENST00000596104 RRS1Q15050 365 aaKnown RBP14.04□□□□□ -0.16
LIG1-209ENST00000596104 CCNL1Q9UK58 526 aaPredicted RBP14.04□□□□□ -0.16
LIG1-209ENST00000596104 COL24A1Q17RW2 1714 aa14.04□□□□□ -0.16
LIG1-209ENST00000596104 QSER1Q2KHR3 1735 aa14.04□□□□□ -0.16
LIG1-209ENST00000596104 FYB1O15117 783 aa14.03□□□□□ -0.16
LIG1-209ENST00000596104 KLHL34Q8N239 644 aa14.03□□□□□ -0.16
LIG1-209ENST00000596104 NLGN2Q8NFZ4 835 aa14.03□□□□□ -0.16
LIG1-209ENST00000596104 GGNBP2Q9H3C7 697 aa14.03□□□□□ -0.16
LIG1-209ENST00000596104 DOT1LQ8TEK3 1739 aa14.02□□□□□ -0.16
LIG1-209ENST00000596104 USP47Q96K76 1375 aa14.02□□□□□ -0.17
LIG1-209ENST00000596104 CGNL1Q0VF96 1302 aa14.02□□□□□ -0.17
LIG1-209ENST00000596104 COL23A1Q86Y22 540 aaPredicted RBP14.02□□□□□ -0.17
LIG1-209ENST00000596104 USHBP1Q8N6Y0 703 aa14.02□□□□□ -0.17
LIG1-209ENST00000596104 SHANK3Q9BYB0 1731 aa14.01□□□□□ -0.17
LIG1-209ENST00000596104 LY75O60449 1722 aa14.01□□□□□ -0.17
LIG1-209ENST00000596104 INSRP06213 1382 aa14□□□□□ -0.17
LIG1-209ENST00000596104 SENP3-EIF4A1A0A087X0R7 540 aa14□□□□□ -0.17
LIG1-209ENST00000596104 RAPGEF4Q8WZA2 1011 aa14□□□□□ -0.17
LIG1-209ENST00000596104 YBX3P16989 372 aaKnown RBP eCLIP13.99□□□□□ -0.17
LIG1-209ENST00000596104 HSP90AB2PQ58FF8 381 aa13.99□□□□□ -0.17
LIG1-209ENST00000596104 PELP1Q8IZL8 1130 aaKnown RBP13.99□□□□□ -0.17
LIG1-209ENST00000596104 TUBGCP6Q96RT7 1819 aa13.99□□□□□ -0.17
LIG1-209ENST00000596104 SMG6Q86US8 1419 aaKnown RBP13.98□□□□□ -0.17
LIG1-209ENST00000596104 CHD4Q14839 1912 aa13.98□□□□□ -0.17
LIG1-209ENST00000596104 TATP17735 454 aaPredicted RBP13.98□□□□□ -0.17
LIG1-209ENST00000596104 TMF1P82094 1093 aa13.98□□□□□ -0.17
LIG1-209ENST00000596104 KAT6BQ8WYB5 2073 aa13.98□□□□□ -0.17
LIG1-209ENST00000596104 FLT4P35916 1363 aa13.97□□□□□ -0.17
LIG1-209ENST00000596104 KIF24Q5T7B8 1368 aa13.97□□□□□ -0.17
LIG1-209ENST00000596104 PCDH11XQ9BZA7 1347 aa13.97□□□□□ -0.17
LIG1-209ENST00000596104 PCDH11YQ9BZA8 1340 aa13.97□□□□□ -0.17
LIG1-209ENST00000596104 RGPD2P0DJD1 1756 aa13.97□□□□□ -0.17
LIG1-209ENST00000596104 CYP27B1O15528 508 aa13.97□□□□□ -0.17
LIG1-209ENST00000596104 MSH5O43196 834 aa13.97□□□□□ -0.17
LIG1-209ENST00000596104 MSL1Q68DK7 614 aa13.97□□□□□ -0.17
LIG1-209ENST00000596104 PALLDQ8WX93 1383 aa13.96□□□□□ -0.17
LIG1-209ENST00000596104 GRIN3BO60391 1043 aa13.95□□□□□ -0.18
LIG1-209ENST00000596104 GIGYF1O75420 1035 aaPredicted RBP13.95□□□□□ -0.18
LIG1-209ENST00000596104 CARD14Q9BXL6 1004 aa13.95□□□□□ -0.18
LIG1-209ENST00000596104 NCAPD2Q15021 1401 aa13.95□□□□□ -0.18
LIG1-209ENST00000596104 MPRIPQ6WCQ1 1025 aa13.94□□□□□ -0.18
LIG1-209ENST00000596104 AMIGO3Q86WK7 504 aa13.94□□□□□ -0.18
LIG1-209ENST00000596104 FLAD1Q8NFF5 587 aa13.94□□□□□ -0.18
LIG1-209ENST00000596104 CD2APQ9Y5K6 639 aa13.94□□□□□ -0.18
LIG1-209ENST00000596104 HMGB2P26583 209 aaKnown RBP13.93□□□□□ -0.18
LIG1-209ENST00000596104 EMILIN1Q9Y6C2 1016 aa13.93□□□□□ -0.18
LIG1-209ENST00000596104 NKX1-1Q15270 411 aaPredicted RBP13.92□□□□□ -0.18
LIG1-209ENST00000596104 CDCA8Q53HL2 280 aa13.92□□□□□ -0.18
LIG1-209ENST00000596104 PIGBQ92521 554 aa13.92□□□□□ -0.18
LIG1-209ENST00000596104 SMARCC1Q92922 1105 aaPredicted RBP13.92□□□□□ -0.18
LIG1-209ENST00000596104 GOLGB1Q14789 3259 aaKnown RBP13.92□□□□□ -0.18
LIG1-209ENST00000596104 NSD3Q9BZ95 1437 aa13.9□□□□□ -0.18
LIG1-209ENST00000596104 SMIM5Q71RC9 77 aa13.9□□□□□ -0.18
LIG1-209ENST00000596104 C5P01031 1676 aa13.9□□□□□ -0.18
LIG1-209ENST00000596104 TOGARAM1Q9Y4F4 1720 aa13.9□□□□□ -0.18
LIG1-209ENST00000596104 ATP10DQ9P241 1426 aa13.9□□□□□ -0.19
LIG1-209ENST00000596104 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.89□□□□□ -0.19
LIG1-209ENST00000596104 AK7Q96M32 723 aa13.89□□□□□ -0.19
LIG1-209ENST00000596104 WASHC2AQ641Q2 1341 aa13.89□□□□□ -0.19
LIG1-209ENST00000596104 ADCY9O60503 1353 aa13.88□□□□□ -0.19
LIG1-209ENST00000596104 C4BP0C0L5 1744 aa13.88□□□□□ -0.19
LIG1-209ENST00000596104 LOC102724428A0A0B4J2F2 783 aa13.88□□□□□ -0.19
LIG1-209ENST00000596104 SIK1P57059 783 aa13.88□□□□□ -0.19
LIG1-209ENST00000596104 EYA1Q99502 592 aa13.88□□□□□ -0.19
LIG1-209ENST00000596104 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.88□□□□□ -0.19
LIG1-209ENST00000596104 SPG7Q9UQ90 795 aa13.88□□□□□ -0.19
LIG1-209ENST00000596104 PKD1L3Q7Z443 1732 aa13.87□□□□□ -0.19
LIG1-209ENST00000596104 PHF14O94880 888 aa13.87□□□□□ -0.19
LIG1-209ENST00000596104 SSFA2P28290 1259 aa13.87□□□□□ -0.19
LIG1-209ENST00000596104 LINC00116Q8NCU8 138 aa13.87□□□□□ -0.19
LIG1-209ENST00000596104 KIF20BQ96Q89 1820 aa13.87□□□□□ -0.19
LIG1-209ENST00000596104 PPM1GO15355 546 aaPredicted RBP13.86□□□□□ -0.19
LIG1-209ENST00000596104 ITPK1Q13572 414 aa13.86□□□□□ -0.19
LIG1-209ENST00000596104 ASAP1Q9ULH1 1129 aa13.86□□□□□ -0.19
LIG1-209ENST00000596104 IGSF1Q8N6C5 1336 aa13.86□□□□□ -0.19
LIG1-209ENST00000596104 TAF1LQ8IZX4 1826 aa13.85□□□□□ -0.19
LIG1-209ENST00000596104 PHKG2P15735 406 aa13.85□□□□□ -0.19
LIG1-209ENST00000596104 TMOD3Q9NYL9 352 aa13.85□□□□□ -0.19
LIG1-209ENST00000596104 POLKQ9UBT6 870 aa13.85□□□□□ -0.19
LIG1-209ENST00000596104 MAP2P11137 1827 aaKnown RBP13.84□□□□□ -0.19
LIG1-209ENST00000596104 GNPATO15228 680 aa13.83□□□□□ -0.2
LIG1-209ENST00000596104 IFNL2Q8IZJ0 200 aa13.83□□□□□ -0.2
LIG1-209ENST00000596104 GPBP1L1Q9HC44 474 aaPredicted RBP13.83□□□□□ -0.2
LIG1-209ENST00000596104 ATG3Q9NT62 314 aa13.83□□□□□ -0.2
LIG1-209ENST00000596104 ANKRD26Q9UPS8 1709 aa13.83□□□□□ -0.2
LIG1-209ENST00000596104 EIF4A2Q14240 407 aaKnown RBP13.82□□□□□ -0.2
LIG1-209ENST00000596104 WWC3Q9ULE0 1092 aa13.82□□□□□ -0.2
LIG1-209ENST00000596104 ITGB4P16144 1822 aa13.82□□□□□ -0.2
LIG1-209ENST00000596104 UBR3Q6ZT12 1888 aa13.82□□□□□ -0.2
LIG1-209ENST00000596104 KDRP35968 1356 aa13.82□□□□□ -0.2
LIG1-209ENST00000596104 PLEKHG2Q9H7P9 1386 aa13.82□□□□□ -0.2
LIG1-209ENST00000596104 ATP6V1AP38606 617 aa13.81□□□□□ -0.2
LIG1-209ENST00000596104 CEP350Q5VT06 3117 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 119.3 ms