RNA–Protein interactions for RNA: ENST00000595993.5

USHBP1-205, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 4

Gene USHBP1, Length 578 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-205ENST00000595993 ARXQ96QS3 562 aa22.27■■□□□ 1.16
USHBP1-205ENST00000595993 MEGF6O75095 1541 aa22.26■■□□□ 1.15
USHBP1-205ENST00000595993 CHD4Q14839 1912 aa22.26■■□□□ 1.15
USHBP1-205ENST00000595993 COG3Q96JB2 828 aa22.26■■□□□ 1.15
USHBP1-205ENST00000595993 DDX54Q8TDD1 881 aaKnown RBP22.25■■□□□ 1.15
USHBP1-205ENST00000595993 SLC16A10Q8TF71 515 aa22.25■■□□□ 1.15
USHBP1-205ENST00000595993 KAT6BQ8WYB5 2073 aa22.25■■□□□ 1.15
USHBP1-205ENST00000595993 LTV1Q96GA3 475 aaPredicted RBP22.24■■□□□ 1.15
USHBP1-205ENST00000595993 FBLN1P23142 703 aa22.22■■□□□ 1.15
USHBP1-205ENST00000595993 ZNF784Q8NCA9 323 aaPredicted RBP22.22■■□□□ 1.15
USHBP1-205ENST00000595993 PNPLA7Q6ZV29 1317 aa22.22■■□□□ 1.15
USHBP1-205ENST00000595993 GOLGB1Q14789 3259 aaKnown RBP22.21■■□□□ 1.15
USHBP1-205ENST00000595993 HSPA5P11021 654 aaKnown RBP22.21■■□□□ 1.15
USHBP1-205ENST00000595993 AMPHP49418 695 aa22.2■■□□□ 1.14
USHBP1-205ENST00000595993 PRIM1P49642 420 aaKnown RBP22.2■■□□□ 1.14
USHBP1-205ENST00000595993 TMF1P82094 1093 aa22.2■■□□□ 1.14
USHBP1-205ENST00000595993 ZCRB1Q8TBF4 217 aaKnown RBP22.2■■□□□ 1.14
USHBP1-205ENST00000595993 FYB1O15117 783 aa22.19■■□□□ 1.14
USHBP1-205ENST00000595993 EIF4G2P78344 907 aaKnown RBP eCLIP22.19■■□□□ 1.14
USHBP1-205ENST00000595993 CGNL1Q0VF96 1302 aa22.18■■□□□ 1.14
USHBP1-205ENST00000595993 NBPF6Q5VWK0 638 aa22.18■■□□□ 1.14
USHBP1-205ENST00000595993 NBPF4Q96M43 638 aa22.18■■□□□ 1.14
USHBP1-205ENST00000595993 KIF20BQ96Q89 1820 aa22.17■■□□□ 1.14
USHBP1-205ENST00000595993 KIF24Q5T7B8 1368 aa22.16■■□□□ 1.14
USHBP1-205ENST00000595993 KCNQ4P56696 695 aa22.15■■□□□ 1.14
USHBP1-205ENST00000595993 RRS1Q15050 365 aaKnown RBP22.15■■□□□ 1.14
USHBP1-205ENST00000595993 SYTL4Q96C24 671 aaPredicted RBP22.15■■□□□ 1.14
USHBP1-205ENST00000595993 INSRP06213 1382 aa22.14■■□□□ 1.14
USHBP1-205ENST00000595993 GGNBP2Q9H3C7 697 aa22.14■■□□□ 1.13
USHBP1-205ENST00000595993 TFCP2L1Q9NZI6 479 aa22.14■■□□□ 1.13
USHBP1-205ENST00000595993 SMG6Q86US8 1419 aaKnown RBP22.14■■□□□ 1.13
USHBP1-205ENST00000595993 C5P01031 1676 aa22.13■■□□□ 1.13
USHBP1-205ENST00000595993 POLD1P28340 1107 aa22.12■■□□□ 1.13
USHBP1-205ENST00000595993 FLT4P35916 1363 aa22.12■■□□□ 1.13
USHBP1-205ENST00000595993 ANKRD26Q9UPS8 1709 aa22.11■■□□□ 1.13
USHBP1-205ENST00000595993 CCNL1Q9UK58 526 aaPredicted RBP22.11■■□□□ 1.13
USHBP1-205ENST00000595993 NCAPD2Q15021 1401 aa22.11■■□□□ 1.13
USHBP1-205ENST00000595993 PKD1L3Q7Z443 1732 aa22.11■■□□□ 1.13
USHBP1-205ENST00000595993 TAF1LQ8IZX4 1826 aa22.1■■□□□ 1.13
USHBP1-205ENST00000595993 USHBP1Q8N6Y0 703 aa22.1■■□□□ 1.13
USHBP1-205ENST00000595993 TOGARAM1Q9Y4F4 1720 aa22.1■■□□□ 1.13
USHBP1-205ENST00000595993 CDCA8Q53HL2 280 aa22.09■■□□□ 1.13
USHBP1-205ENST00000595993 HSP90AB2PQ58FF8 381 aa22.09■■□□□ 1.13
USHBP1-205ENST00000595993 RAPGEF4Q8WZA2 1011 aa22.09■■□□□ 1.13
USHBP1-205ENST00000595993 PCDH11XQ9BZA7 1347 aa22.07■■□□□ 1.12
USHBP1-205ENST00000595993 PCDH11YQ9BZA8 1340 aa22.07■■□□□ 1.12
USHBP1-205ENST00000595993 TATP17735 454 aaPredicted RBP22.07■■□□□ 1.12
USHBP1-205ENST00000595993 COL23A1Q86Y22 540 aaPredicted RBP22.07■■□□□ 1.12
USHBP1-205ENST00000595993 ITGB4P16144 1822 aa22.06■■□□□ 1.12
USHBP1-205ENST00000595993 GPR162Q16538 588 aa22.06■■□□□ 1.12
USHBP1-205ENST00000595993 NLGN2Q8NFZ4 835 aa22.06■■□□□ 1.12
USHBP1-205ENST00000595993 CARD14Q9BXL6 1004 aa22.05■■□□□ 1.12
USHBP1-205ENST00000595993 CYP27B1O15528 508 aa22.04■■□□□ 1.12
USHBP1-205ENST00000595993 C4BP0C0L5 1744 aa22.03■■□□□ 1.12
USHBP1-205ENST00000595993 PALLDQ8WX93 1383 aa22.02■■□□□ 1.12
USHBP1-205ENST00000595993 HMGB2P26583 209 aaKnown RBP22.02■■□□□ 1.12
USHBP1-205ENST00000595993 MAP2P11137 1827 aaKnown RBP22.01■■□□□ 1.11
USHBP1-205ENST00000595993 NSD3Q9BZ95 1437 aa22.01■■□□□ 1.11
USHBP1-205ENST00000595993 C1QTNF8P60827 252 aa22.01■■□□□ 1.11
USHBP1-205ENST00000595993 KLHL34Q8N239 644 aa22.01■■□□□ 1.11
USHBP1-205ENST00000595993 POLR3GLQ9BT43 218 aa22.01■■□□□ 1.11
USHBP1-205ENST00000595993 NKX1-1Q15270 411 aaPredicted RBP22■■□□□ 1.11
USHBP1-205ENST00000595993 EMILIN1Q9Y6C2 1016 aa22■■□□□ 1.11
USHBP1-205ENST00000595993 UBR3Q6ZT12 1888 aa22■■□□□ 1.11
USHBP1-205ENST00000595993 FLAD1Q8NFF5 587 aa21.99■■□□□ 1.11
USHBP1-205ENST00000595993 YBX3P16989 372 aaKnown RBP eCLIP21.98■■□□□ 1.11
USHBP1-205ENST00000595993 MPRIPQ6WCQ1 1025 aa21.97■■□□□ 1.11
USHBP1-205ENST00000595993 WASHC2AQ641Q2 1341 aa21.97■■□□□ 1.11
USHBP1-205ENST00000595993 GRIN3BO60391 1043 aa21.96■■□□□ 1.11
USHBP1-205ENST00000595993 SMARCC1Q92922 1105 aaPredicted RBP21.96■■□□□ 1.11
USHBP1-205ENST00000595993 CD2APQ9Y5K6 639 aa21.96■■□□□ 1.11
USHBP1-205ENST00000595993 KIF7Q2M1P5 1343 aa21.96■■□□□ 1.11
USHBP1-205ENST00000595993 MSH5O43196 834 aa21.95■■□□□ 1.1
USHBP1-205ENST00000595993 MSL1Q68DK7 614 aa21.95■■□□□ 1.1
USHBP1-205ENST00000595993 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.95■■□□□ 1.1
USHBP1-205ENST00000595993 AMIGO3Q86WK7 504 aa21.94■■□□□ 1.1
USHBP1-205ENST00000595993 PELP1Q8IZL8 1130 aaKnown RBP21.94■■□□□ 1.1
USHBP1-205ENST00000595993 PIGBQ92521 554 aa21.94■■□□□ 1.1
USHBP1-205ENST00000595993 PLEKHG2Q9H7P9 1386 aa21.94■■□□□ 1.1
USHBP1-205ENST00000595993 CEP350Q5VT06 3117 aa21.92■■□□□ 1.1
USHBP1-205ENST00000595993 SPG7Q9UQ90 795 aa21.92■■□□□ 1.1
USHBP1-205ENST00000595993 SENP3-EIF4A1A0A087X0R7 540 aa21.91■■□□□ 1.1
USHBP1-205ENST00000595993 EYA1Q99502 592 aa21.91■■□□□ 1.1
USHBP1-205ENST00000595993 GIGYF1O75420 1035 aaPredicted RBP21.9■■□□□ 1.1
USHBP1-205ENST00000595993 POLKQ9UBT6 870 aa21.9■■□□□ 1.1
USHBP1-205ENST00000595993 ZNF831Q5JPB2 1677 aa21.89■■□□□ 1.1
USHBP1-205ENST00000595993 AK7Q96M32 723 aa21.89■■□□□ 1.09
USHBP1-205ENST00000595993 LOC102724428A0A0B4J2F2 783 aa21.88■■□□□ 1.09
USHBP1-205ENST00000595993 SSFA2P28290 1259 aa21.88■■□□□ 1.09
USHBP1-205ENST00000595993 SIK1P57059 783 aa21.88■■□□□ 1.09
USHBP1-205ENST00000595993 ADCY9O60503 1353 aa21.87■■□□□ 1.09
USHBP1-205ENST00000595993 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP21.87■■□□□ 1.09
USHBP1-205ENST00000595993 LINC00116Q8NCU8 138 aa21.87■■□□□ 1.09
USHBP1-205ENST00000595993 PANK3Q9H999 370 aa21.87■■□□□ 1.09
USHBP1-205ENST00000595993 PPM1GO15355 546 aaPredicted RBP21.86■■□□□ 1.09
USHBP1-205ENST00000595993 PHKG2P15735 406 aa21.86■■□□□ 1.09
USHBP1-205ENST00000595993 IFNL2Q8IZJ0 200 aa21.85■■□□□ 1.09
USHBP1-205ENST00000595993 TMOD3Q9NYL9 352 aa21.85■■□□□ 1.09
USHBP1-205ENST00000595993 ATP10DQ9P241 1426 aa21.85■■□□□ 1.09
USHBP1-205ENST00000595993 ITPK1Q13572 414 aa21.84■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms