RNA–Protein interactions for RNA: ENST00000594759.5

LIG1-207, Transcript of DNA ligase 1, humanhuman

TSL 1 (best)

Gene LIG1, Length 4,102 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-207ENST00000594759 NUP160Q12769 1436 aa14.6□□□□□ -0.07
LIG1-207ENST00000594759 TXNDC2Q86VQ3 553 aa14.6□□□□□ -0.07
LIG1-207ENST00000594759 FKBP5Q13451 457 aaPredicted RBP14.6□□□□□ -0.07
LIG1-207ENST00000594759 GIMAP6Q6P9H5 292 aa14.6□□□□□ -0.07
LIG1-207ENST00000594759 RALGAPBQ86X10 1494 aa14.6□□□□□ -0.07
LIG1-207ENST00000594759 PBRM1Q86U86 1689 aa14.6□□□□□ -0.07
LIG1-207ENST00000594759 KRBA2Q6ZNG9 492 aa14.6□□□□□ -0.07
LIG1-207ENST00000594759 FBXW7Q969H0 707 aa14.6□□□□□ -0.07
LIG1-207ENST00000594759 LRRFIP2Q9Y608 721 aaKnown RBP14.6□□□□□ -0.07
LIG1-207ENST00000594759 FANCAO15360 1455 aa14.6□□□□□ -0.07
LIG1-207ENST00000594759 HMOX1P09601 288 aa14.6□□□□□ -0.07
LIG1-207ENST00000594759 PTGS1P23219 599 aa14.6□□□□□ -0.07
LIG1-207ENST00000594759 AXDND1Q5T1B0 1012 aaPredicted RBP14.6□□□□□ -0.07
LIG1-207ENST00000594759 ACBD3Q9H3P7 528 aa14.6□□□□□ -0.07
LIG1-207ENST00000594759 CLIP2Q9UDT6 1046 aa14.6□□□□□ -0.07
LIG1-207ENST00000594759 MAP3K11Q16584 847 aa14.59□□□□□ -0.07
LIG1-207ENST00000594759 NUP62CLQ9H1M0 184 aa14.59□□□□□ -0.07
LIG1-207ENST00000594759 TRAPPC8Q9Y2L5 1435 aa14.59□□□□□ -0.07
LIG1-207ENST00000594759 CT47B1P0C2W7 299 aaPredicted RBP14.59□□□□□ -0.07
LIG1-207ENST00000594759 OS9Q13438 667 aaPredicted RBP14.59□□□□□ -0.07
LIG1-207ENST00000594759 TERF2Q15554 542 aa14.59□□□□□ -0.07
LIG1-207ENST00000594759 NUCB1Q02818 461 aa14.58□□□□□ -0.07
LIG1-207ENST00000594759 TAOK2Q9UL54 1235 aa14.58□□□□□ -0.07
LIG1-207ENST00000594759 TCOF1Q13428 1488 aaKnown RBP14.58□□□□□ -0.07
LIG1-207ENST00000594759 SYCP2Q9BX26 1530 aa14.58□□□□□ -0.07
LIG1-207ENST00000594759 IDI1Q13907 227 aa14.58□□□□□ -0.08
LIG1-207ENST00000594759 CAMK4Q16566 473 aa14.58□□□□□ -0.08
LIG1-207ENST00000594759 TTC31Q49AM3 519 aaPredicted RBP14.58□□□□□ -0.08
LIG1-207ENST00000594759 SAMD9Q5K651 1589 aa14.58□□□□□ -0.08
LIG1-207ENST00000594759 MX1P20591 662 aa14.58□□□□□ -0.08
LIG1-207ENST00000594759 AMPHP49418 695 aa14.58□□□□□ -0.08
LIG1-207ENST00000594759 USP48Q86UV5 1035 aa14.58□□□□□ -0.08
LIG1-207ENST00000594759 BANK1Q8NDB2 785 aa14.58□□□□□ -0.08
LIG1-207ENST00000594759 SLC26A8Q96RN1 970 aa14.58□□□□□ -0.08
LIG1-207ENST00000594759 SLU7O95391 586 aaKnown RBP14.57□□□□□ -0.08
LIG1-207ENST00000594759 COG3Q96JB2 828 aa14.57□□□□□ -0.08
LIG1-207ENST00000594759 MYCBPQ99417 103 aaPredicted RBP14.57□□□□□ -0.08
LIG1-207ENST00000594759 DRC1Q96MC2 740 aa14.57□□□□□ -0.08
LIG1-207ENST00000594759 GPT2Q8TD30 523 aa14.57□□□□□ -0.08
LIG1-207ENST00000594759 NUTM2GQ5VZR2 741 aa14.56□□□□□ -0.08
LIG1-207ENST00000594759 TEX2Q8IWB9 1127 aa14.56□□□□□ -0.08
LIG1-207ENST00000594759 API5Q9BZZ5 524 aaKnown RBP14.56□□□□□ -0.08
LIG1-207ENST00000594759 GIMAP7Q8NHV1 300 aa14.56□□□□□ -0.08
LIG1-207ENST00000594759 EFCC1Q9HA90 598 aa14.56□□□□□ -0.08
LIG1-207ENST00000594759 MNAT1P51948 309 aa14.56□□□□□ -0.08
LIG1-207ENST00000594759 CABP1Q9NZU7 370 aa14.56□□□□□ -0.08
LIG1-207ENST00000594759 HSP90AB3PQ58FF7 597 aa14.56□□□□□ -0.08
LIG1-207ENST00000594759 PLCH2O75038 1416 aa14.55□□□□□ -0.08
LIG1-207ENST00000594759 A0A1B0GUL7 405 aa14.55□□□□□ -0.08
LIG1-207ENST00000594759 DIAPH1O60610 1272 aaKnown RBP14.55□□□□□ -0.08
LIG1-207ENST00000594759 CHAMP1Q96JM3 812 aa14.55□□□□□ -0.08
LIG1-207ENST00000594759 H3BQV1 296 aa14.55□□□□□ -0.08
LIG1-207ENST00000594759 CD2BP2O95400 341 aaKnown RBP14.55□□□□□ -0.08
LIG1-207ENST00000594759 TPM1P09493 284 aa14.55□□□□□ -0.08
LIG1-207ENST00000594759 TDO2P48775 406 aa14.55□□□□□ -0.08
LIG1-207ENST00000594759 UBE2HP62256 183 aa14.55□□□□□ -0.08
LIG1-207ENST00000594759 IFFO2Q5TF58 517 aa14.55□□□□□ -0.08
LIG1-207ENST00000594759 TTLL5Q6EMB2 1281 aa14.55□□□□□ -0.08
LIG1-207ENST00000594759 FAM177A1Q8N128 213 aaPredicted RBP14.55□□□□□ -0.08
LIG1-207ENST00000594759 DNAAF4Q8WXU2 420 aa14.55□□□□□ -0.08
LIG1-207ENST00000594759 UPF3BQ9BZI7 483 aaKnown RBP14.55□□□□□ -0.08
LIG1-207ENST00000594759 CEP170Q5SW79 1584 aa14.55□□□□□ -0.08
LIG1-207ENST00000594759 DHX37Q8IY37 1157 aaKnown RBP14.55□□□□□ -0.08
LIG1-207ENST00000594759 TMX3Q96JJ7 454 aa14.55□□□□□ -0.08
LIG1-207ENST00000594759 TESK2Q96S53 571 aa14.55□□□□□ -0.08
LIG1-207ENST00000594759 SLC52A1Q9NWF4 448 aa14.55□□□□□ -0.08
LIG1-207ENST00000594759 EIF3JO75822 258 aaKnown RBP14.54□□□□□ -0.08
LIG1-207ENST00000594759 SECISBP2LQ93073 1101 aaKnown RBP14.54□□□□□ -0.08
LIG1-207ENST00000594759 KDM5BQ9UGL1 1544 aa14.54□□□□□ -0.08
LIG1-207ENST00000594759 CCDC171Q6TFL3 1326 aa14.54□□□□□ -0.08
LIG1-207ENST00000594759 CCP110O43303 1012 aa14.54□□□□□ -0.08
LIG1-207ENST00000594759 HSP90B1P14625 803 aaKnown RBP14.54□□□□□ -0.08
LIG1-207ENST00000594759 PKP1Q13835 747 aa14.54□□□□□ -0.08
LIG1-207ENST00000594759 GPRASP1Q5JY77 1395 aa14.54□□□□□ -0.08
LIG1-207ENST00000594759 URI1O94763 535 aaPredicted RBP14.54□□□□□ -0.08
LIG1-207ENST00000594759 NEMFO60524 1076 aa14.53□□□□□ -0.08
LIG1-207ENST00000594759 SMC2O95347 1197 aa14.53□□□□□ -0.08
LIG1-207ENST00000594759 KRT85P78386 507 aa14.53□□□□□ -0.08
LIG1-207ENST00000594759 ELF2Q15723 593 aa14.53□□□□□ -0.08
LIG1-207ENST00000594759 WAPLQ7Z5K2 1190 aa14.53□□□□□ -0.08
LIG1-207ENST00000594759 CCDC91Q7Z6B0 441 aa14.53□□□□□ -0.08
LIG1-207ENST00000594759 CKAP2LQ8IYA6 745 aa14.53□□□□□ -0.08
LIG1-207ENST00000594759 HNRNPH2P55795 449 aaKnown RBP14.53□□□□□ -0.08
LIG1-207ENST00000594759 ERO1AQ96HE7 468 aa14.53□□□□□ -0.08
LIG1-207ENST00000594759 ASXL2Q76L83 1435 aa14.53□□□□□ -0.08
LIG1-207ENST00000594759 SF3A1Q15459 793 aaKnown RBP14.53□□□□□ -0.08
LIG1-207ENST00000594759 ZMYM3Q14202 1370 aa14.53□□□□□ -0.08
LIG1-207ENST00000594759 IVLP07476 585 aa14.52□□□□□ -0.08
LIG1-207ENST00000594759 ZNF710Q8N1W2 664 aa14.52□□□□□ -0.08
LIG1-207ENST00000594759 NAT10Q9H0A0 1025 aaKnown RBP14.52□□□□□ -0.08
LIG1-207ENST00000594759 DDX41Q9UJV9 622 aaKnown RBP14.52□□□□□ -0.08
LIG1-207ENST00000594759 CCDC73Q6ZRK6 1079 aa14.52□□□□□ -0.09
LIG1-207ENST00000594759 CCDC102AQ96A19 550 aa14.52□□□□□ -0.09
LIG1-207ENST00000594759 CDK19Q9BWU1 502 aa14.52□□□□□ -0.09
LIG1-207ENST00000594759 FAM193AP78312 1265 aa14.51□□□□□ -0.09
LIG1-207ENST00000594759 FAM200AQ8TCP9 573 aa14.51□□□□□ -0.09
LIG1-207ENST00000594759 FMNL2Q96PY5 1086 aa14.51□□□□□ -0.09
LIG1-207ENST00000594759 SKILP12757 684 aa14.51□□□□□ -0.09
LIG1-207ENST00000594759 SNW1Q13573 536 aaKnown RBP14.51□□□□□ -0.09
LIG1-207ENST00000594759 ARHGAP29Q52LW3 1261 aa14.51□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms