RNA–Protein interactions for RNA: ENST00000594724.5

USE1-205, Transcript of unconventional SNARE in the ER 1, humanhuman

TSL 3

Gene USE1, Length 744 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USE1-205ENST00000594724 AMER1Q5JTC6 1135 aaPredicted RBP20.19■□□□□ 0.82
USE1-205ENST00000594724 PROM2Q8N271 834 aa20.18■□□□□ 0.82
USE1-205ENST00000594724 EYA1Q99502 592 aa20.18■□□□□ 0.82
USE1-205ENST00000594724 RREB1Q92766 1687 aa20.17■□□□□ 0.82
USE1-205ENST00000594724 PER1O15534 1290 aaPredicted RBP20.17■□□□□ 0.82
USE1-205ENST00000594724 EIF4A2Q14240 407 aaKnown RBP20.17■□□□□ 0.82
USE1-205ENST00000594724 NBPF14Q5TI25 921 aa20.16■□□□□ 0.82
USE1-205ENST00000594724 TXNRD1Q16881 649 aa20.15■□□□□ 0.82
USE1-205ENST00000594724 NUP188Q5SRE5 1749 aa20.15■□□□□ 0.82
USE1-205ENST00000594724 NHSQ6T4R5 1651 aa20.14■□□□□ 0.81
USE1-205ENST00000594724 CC2D1BQ5T0F9 858 aaKnown RBP20.14■□□□□ 0.81
USE1-205ENST00000594724 SYTL4Q96C24 671 aaPredicted RBP20.14■□□□□ 0.81
USE1-205ENST00000594724 PRIM1P49642 420 aaKnown RBP20.13■□□□□ 0.81
USE1-205ENST00000594724 CNGB1Q14028 1251 aaPredicted RBP20.13■□□□□ 0.81
USE1-205ENST00000594724 SRCAPQ6ZRS2 3230 aa20.13■□□□□ 0.81
USE1-205ENST00000594724 SHANK3Q9BYB0 1731 aa20.13■□□□□ 0.81
USE1-205ENST00000594724 NCAPD2Q15021 1401 aa20.11■□□□□ 0.81
USE1-205ENST00000594724 KAT6BQ8WYB5 2073 aa20.11■□□□□ 0.81
USE1-205ENST00000594724 ANO8Q9HCE9 1232 aaPredicted RBP20.11■□□□□ 0.81
USE1-205ENST00000594724 RGPD3A6NKT7 1758 aaPredicted RBP20.11■□□□□ 0.81
USE1-205ENST00000594724 RGPD4Q7Z3J3 1758 aa20.11■□□□□ 0.81
USE1-205ENST00000594724 CYP27B1O15528 508 aa20.1■□□□□ 0.81
USE1-205ENST00000594724 PCDH11XQ9BZA7 1347 aa20.09■□□□□ 0.81
USE1-205ENST00000594724 PCDH11YQ9BZA8 1340 aa20.09■□□□□ 0.81
USE1-205ENST00000594724 BTAF1O14981 1849 aa20.08■□□□□ 0.8
USE1-205ENST00000594724 MTHFSP49914 203 aa20.07■□□□□ 0.8
USE1-205ENST00000594724 SPG7Q9UQ90 795 aa20.07■□□□□ 0.8
USE1-205ENST00000594724 IGSF1Q8N6C5 1336 aa20.06■□□□□ 0.8
USE1-205ENST00000594724 DOT1LQ8TEK3 1739 aa20.06■□□□□ 0.8
USE1-205ENST00000594724 LRRC4BQ9NT99 713 aa20.05■□□□□ 0.8
USE1-205ENST00000594724 STK32BQ9NY57 414 aa20.04■□□□□ 0.8
USE1-205ENST00000594724 IL13P35225 146 aa20.03■□□□□ 0.8
USE1-205ENST00000594724 KCNQ4P56696 695 aa20.03■□□□□ 0.8
USE1-205ENST00000594724 AEBP1Q8IUX7 1158 aa20.03■□□□□ 0.8
USE1-205ENST00000594724 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.03■□□□□ 0.8
USE1-205ENST00000594724 PKD1L3Q7Z443 1732 aa20.02■□□□□ 0.8
USE1-205ENST00000594724 NKX1-1Q15270 411 aaPredicted RBP20.02■□□□□ 0.8
USE1-205ENST00000594724 SLC15A2Q16348 729 aa20.02■□□□□ 0.8
USE1-205ENST00000594724 MPRIPQ6WCQ1 1025 aa20.02■□□□□ 0.8
USE1-205ENST00000594724 PDGFDQ9GZP0 370 aaPredicted RBP20.02■□□□□ 0.8
USE1-205ENST00000594724 NPC1L1Q9UHC9 1359 aa20.02■□□□□ 0.8
USE1-205ENST00000594724 IFNL2Q8IZJ0 200 aa20.01■□□□□ 0.79
USE1-205ENST00000594724 PHKG2P15735 406 aa20■□□□□ 0.79
USE1-205ENST00000594724 SULT6B1Q6IMI4 303 aa20■□□□□ 0.79
USE1-205ENST00000594724 LRP5O75197 1615 aa20■□□□□ 0.79
USE1-205ENST00000594724 ZNF827Q17R98 1081 aa19.98■□□□□ 0.79
USE1-205ENST00000594724 PLEKHO1Q53GL0 409 aaPredicted RBP19.98■□□□□ 0.79
USE1-205ENST00000594724 SLC27A3Q5K4L6 730 aa19.98■□□□□ 0.79
USE1-205ENST00000594724 PIGBQ92521 554 aa19.97■□□□□ 0.79
USE1-205ENST00000594724 TOGARAM1Q9Y4F4 1720 aa19.96■□□□□ 0.79
USE1-205ENST00000594724 DIAPH1O60610 1272 aaKnown RBP19.96■□□□□ 0.79
USE1-205ENST00000594724 SPON1Q9HCB6 807 aa19.96■□□□□ 0.79
USE1-205ENST00000594724 CCNL1Q9UK58 526 aaPredicted RBP19.96■□□□□ 0.79
USE1-205ENST00000594724 ZBTB7AO95365 584 aa19.95■□□□□ 0.78
USE1-205ENST00000594724 HMOX1P09601 288 aa19.95■□□□□ 0.78
USE1-205ENST00000594724 AMOTQ4VCS5 1084 aa19.95■□□□□ 0.78
USE1-205ENST00000594724 ZNF530Q6P9A1 599 aaPredicted RBP19.95■□□□□ 0.78
USE1-205ENST00000594724 PAPPAQ13219 1627 aa19.94■□□□□ 0.78
USE1-205ENST00000594724 AKT1S1Q96B36 256 aa19.94■□□□□ 0.78
USE1-205ENST00000594724 KDRP35968 1356 aa19.94■□□□□ 0.78
USE1-205ENST00000594724 PLEKHG2Q9H7P9 1386 aa19.94■□□□□ 0.78
USE1-205ENST00000594724 TMOD3Q9NYL9 352 aa19.93■□□□□ 0.78
USE1-205ENST00000594724 ATF5Q9Y2D1 282 aaPredicted RBP19.93■□□□□ 0.78
USE1-205ENST00000594724 PALLDQ8WX93 1383 aa19.93■□□□□ 0.78
USE1-205ENST00000594724 LY75O60449 1722 aa19.93■□□□□ 0.78
USE1-205ENST00000594724 ITGB4P16144 1822 aa19.92■□□□□ 0.78
USE1-205ENST00000594724 CASZ1Q86V15 1759 aa19.92■□□□□ 0.78
USE1-205ENST00000594724 SMARCC1Q92922 1105 aaPredicted RBP19.91■□□□□ 0.78
USE1-205ENST00000594724 HSP90AB1P08238 724 aaKnown RBP19.9■□□□□ 0.78
USE1-205ENST00000594724 C1orf141Q5JVX7 400 aa19.9■□□□□ 0.78
USE1-205ENST00000594724 DCAF5Q96JK2 942 aa19.9■□□□□ 0.78
USE1-205ENST00000594724 TFCP2L1Q9NZI6 479 aa19.9■□□□□ 0.78
USE1-205ENST00000594724 ASAP1Q9ULH1 1129 aa19.9■□□□□ 0.78
USE1-205ENST00000594724 U2SURPO15042 1029 aaKnown RBP19.89■□□□□ 0.77
USE1-205ENST00000594724 PPP2R1AP30153 589 aa19.89■□□□□ 0.77
USE1-205ENST00000594724 PPP1R1BQ9UD71 204 aaPredicted RBP19.89■□□□□ 0.77
USE1-205ENST00000594724 COL3A1P02461 1466 aaPredicted RBP19.88■□□□□ 0.77
USE1-205ENST00000594724 ERVV-2B6SEH9 535 aa19.88■□□□□ 0.77
USE1-205ENST00000594724 KDM6AO15550 1401 aaPredicted RBP19.87■□□□□ 0.77
USE1-205ENST00000594724 ATG3Q9NT62 314 aa19.87■□□□□ 0.77
USE1-205ENST00000594724 PNPLA7Q6ZV29 1317 aa19.86■□□□□ 0.77
USE1-205ENST00000594724 PTGER2P43116 358 aa19.86■□□□□ 0.77
USE1-205ENST00000594724 CABP4P57796 275 aa19.86■□□□□ 0.77
USE1-205ENST00000594724 CFAP53Q96M91 514 aa19.86■□□□□ 0.77
USE1-205ENST00000594724 MTFR1LQ9H019 292 aa19.86■□□□□ 0.77
USE1-205ENST00000594724 LOC102724428A0A0B4J2F2 783 aa19.85■□□□□ 0.77
USE1-205ENST00000594724 SIK1P57059 783 aa19.85■□□□□ 0.77
USE1-205ENST00000594724 MTHFSDQ2M296 383 aaKnown RBP19.85■□□□□ 0.77
USE1-205ENST00000594724 AKAP4Q5JQC9 854 aa19.84■□□□□ 0.77
USE1-205ENST00000594724 DDX10Q13206 875 aaKnown RBP19.83■□□□□ 0.77
USE1-205ENST00000594724 NFATC2IPQ8NCF5 419 aa19.83■□□□□ 0.77
USE1-205ENST00000594724 LGR6Q9HBX8 967 aa19.83■□□□□ 0.77
USE1-205ENST00000594724 MSH5O43196 834 aa19.82■□□□□ 0.76
USE1-205ENST00000594724 ATP6V1AP38606 617 aa19.82■□□□□ 0.76
USE1-205ENST00000594724 COL23A1Q86Y22 540 aaPredicted RBP19.82■□□□□ 0.76
USE1-205ENST00000594724 ITPK1Q13572 414 aa19.81■□□□□ 0.76
USE1-205ENST00000594724 LINC00116Q8NCU8 138 aa19.81■□□□□ 0.76
USE1-205ENST00000594724 SGIP1Q9BQI5 828 aa19.81■□□□□ 0.76
USE1-205ENST00000594724 RBM42Q9BTD8 480 aaKnown RBP19.81■□□□□ 0.76
USE1-205ENST00000594724 C5P01031 1676 aa19.81■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms