RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 PAPPAQ13219 1627 aa17.41■□□□□ 0.38
UPF1-203ENST00000594504 DCAF8L1A6NGE4 600 aa17.41■□□□□ 0.38
UPF1-203ENST00000594504 SGIP1Q9BQI5 828 aa17.41■□□□□ 0.38
UPF1-203ENST00000594504 FHDC1Q9C0D6 1143 aaPredicted RBP17.41■□□□□ 0.38
UPF1-203ENST00000594504 MEGF6O75095 1541 aa17.41■□□□□ 0.38
UPF1-203ENST00000594504 HSP90AB2PQ58FF8 381 aa17.4■□□□□ 0.38
UPF1-203ENST00000594504 SYT17Q9BSW7 474 aa17.4■□□□□ 0.38
UPF1-203ENST00000594504 CARD14Q9BXL6 1004 aa17.4■□□□□ 0.38
UPF1-203ENST00000594504 SHANK3Q9BYB0 1731 aa17.4■□□□□ 0.38
UPF1-203ENST00000594504 AKT1S1Q96B36 256 aa17.39■□□□□ 0.37
UPF1-203ENST00000594504 DOT1LQ8TEK3 1739 aa17.38■□□□□ 0.37
UPF1-203ENST00000594504 NSD2O96028 1365 aa17.37■□□□□ 0.37
UPF1-203ENST00000594504 KIF20BQ96Q89 1820 aa17.36■□□□□ 0.37
UPF1-203ENST00000594504 CDCA8Q53HL2 280 aa17.36■□□□□ 0.37
UPF1-203ENST00000594504 SLC27A3Q5K4L6 730 aa17.36■□□□□ 0.37
UPF1-203ENST00000594504 ARXQ96QS3 562 aa17.36■□□□□ 0.37
UPF1-203ENST00000594504 RTL1A6NKG5 1358 aa17.36■□□□□ 0.37
UPF1-203ENST00000594504 RAPGEF4Q8WZA2 1011 aa17.35■□□□□ 0.37
UPF1-203ENST00000594504 EMILIN1Q9Y6C2 1016 aa17.35■□□□□ 0.37
UPF1-203ENST00000594504 PNPLA7Q6ZV29 1317 aa17.35■□□□□ 0.37
UPF1-203ENST00000594504 TATP17735 454 aaPredicted RBP17.34■□□□□ 0.37
UPF1-203ENST00000594504 TFCP2L1Q9NZI6 479 aa17.34■□□□□ 0.37
UPF1-203ENST00000594504 NSD3Q9BZ95 1437 aa17.33■□□□□ 0.36
UPF1-203ENST00000594504 INSRP06213 1382 aa17.33■□□□□ 0.36
UPF1-203ENST00000594504 POLR3GLQ9BT43 218 aa17.33■□□□□ 0.36
UPF1-203ENST00000594504 LY75O60449 1722 aa17.33■□□□□ 0.36
UPF1-203ENST00000594504 PPM1GO15355 546 aaPredicted RBP17.32■□□□□ 0.36
UPF1-203ENST00000594504 CCNL1Q9UK58 526 aaPredicted RBP17.32■□□□□ 0.36
UPF1-203ENST00000594504 TUBGCP6Q96RT7 1819 aa17.32■□□□□ 0.36
UPF1-203ENST00000594504 SMG6Q86US8 1419 aaKnown RBP17.31■□□□□ 0.36
UPF1-203ENST00000594504 FLT4P35916 1363 aa17.31■□□□□ 0.36
UPF1-203ENST00000594504 KLHL34Q8N239 644 aa17.31■□□□□ 0.36
UPF1-203ENST00000594504 CGNL1Q0VF96 1302 aa17.3■□□□□ 0.36
UPF1-203ENST00000594504 CYP27B1O15528 508 aa17.29■□□□□ 0.36
UPF1-203ENST00000594504 MPRIPQ6WCQ1 1025 aa17.29■□□□□ 0.36
UPF1-203ENST00000594504 SLC16A10Q8TF71 515 aa17.29■□□□□ 0.36
UPF1-203ENST00000594504 QSER1Q2KHR3 1735 aa17.29■□□□□ 0.36
UPF1-203ENST00000594504 MSH5O43196 834 aa17.28■□□□□ 0.36
UPF1-203ENST00000594504 MAP2P11137 1827 aaKnown RBP17.28■□□□□ 0.36
UPF1-203ENST00000594504 PCDH11XQ9BZA7 1347 aa17.27■□□□□ 0.36
UPF1-203ENST00000594504 PCDH11YQ9BZA8 1340 aa17.27■□□□□ 0.36
UPF1-203ENST00000594504 COL23A1Q86Y22 540 aaPredicted RBP17.27■□□□□ 0.36
UPF1-203ENST00000594504 POLD1P28340 1107 aa17.26■□□□□ 0.35
UPF1-203ENST00000594504 KIF24Q5T7B8 1368 aa17.26■□□□□ 0.35
UPF1-203ENST00000594504 TNNT2P45379 298 aaPredicted RBP17.25■□□□□ 0.35
UPF1-203ENST00000594504 EIF4G2P78344 907 aaKnown RBP eCLIP17.25■□□□□ 0.35
UPF1-203ENST00000594504 EYA1Q99502 592 aa17.25■□□□□ 0.35
UPF1-203ENST00000594504 POLKQ9UBT6 870 aa17.25■□□□□ 0.35
UPF1-203ENST00000594504 COL24A1Q17RW2 1714 aa17.24■□□□□ 0.35
UPF1-203ENST00000594504 WASHC2AQ641Q2 1341 aa17.24■□□□□ 0.35
UPF1-203ENST00000594504 ITGB4P16144 1822 aa17.24■□□□□ 0.35
UPF1-203ENST00000594504 GPR162Q16538 588 aa17.24■□□□□ 0.35
UPF1-203ENST00000594504 MSL1Q68DK7 614 aa17.24■□□□□ 0.35
UPF1-203ENST00000594504 NLGN2Q8NFZ4 835 aa17.24■□□□□ 0.35
UPF1-203ENST00000594504 SMIM5Q71RC9 77 aa17.23■□□□□ 0.35
UPF1-203ENST00000594504 PELP1Q8IZL8 1130 aaKnown RBP17.23■□□□□ 0.35
UPF1-203ENST00000594504 ZNF784Q8NCA9 323 aaPredicted RBP17.23■□□□□ 0.35
UPF1-203ENST00000594504 PIGBQ92521 554 aa17.23■□□□□ 0.35
UPF1-203ENST00000594504 TOGARAM1Q9Y4F4 1720 aa17.23■□□□□ 0.35
UPF1-203ENST00000594504 PALLDQ8WX93 1383 aa17.23■□□□□ 0.35
UPF1-203ENST00000594504 MAP3K5Q99683 1374 aa17.23■□□□□ 0.35
UPF1-203ENST00000594504 HSPA5P11021 654 aaKnown RBP17.22■□□□□ 0.35
UPF1-203ENST00000594504 SPG7Q9UQ90 795 aa17.21■□□□□ 0.35
UPF1-203ENST00000594504 CHD4Q14839 1912 aa17.21■□□□□ 0.35
UPF1-203ENST00000594504 TAF1LQ8IZX4 1826 aa17.21■□□□□ 0.35
UPF1-203ENST00000594504 PKD1L3Q7Z443 1732 aa17.21■□□□□ 0.35
UPF1-203ENST00000594504 C5P01031 1676 aa17.2■□□□□ 0.34
UPF1-203ENST00000594504 NKX1-1Q15270 411 aaPredicted RBP17.2■□□□□ 0.34
UPF1-203ENST00000594504 AMIGO3Q86WK7 504 aa17.2■□□□□ 0.34
UPF1-203ENST00000594504 PANK3Q9H999 370 aa17.2■□□□□ 0.34
UPF1-203ENST00000594504 NCAPD2Q15021 1401 aa17.2■□□□□ 0.34
UPF1-203ENST00000594504 ANKRD26Q9UPS8 1709 aa17.19■□□□□ 0.34
UPF1-203ENST00000594504 EIF4A2Q14240 407 aaKnown RBP17.19■□□□□ 0.34
UPF1-203ENST00000594504 SMARCC1Q92922 1105 aaPredicted RBP17.18■□□□□ 0.34
UPF1-203ENST00000594504 ASAP1Q9ULH1 1129 aa17.17■□□□□ 0.34
UPF1-203ENST00000594504 PHF14O94880 888 aa17.16■□□□□ 0.34
UPF1-203ENST00000594504 PHKG2P15735 406 aa17.16■□□□□ 0.34
UPF1-203ENST00000594504 IFNL2Q8IZJ0 200 aa17.16■□□□□ 0.34
UPF1-203ENST00000594504 C4BP0C0L5 1744 aa17.16■□□□□ 0.34
UPF1-203ENST00000594504 YBX3P16989 372 aaKnown RBP eCLIP17.15■□□□□ 0.34
UPF1-203ENST00000594504 LINC00116Q8NCU8 138 aa17.15■□□□□ 0.34
UPF1-203ENST00000594504 AK7Q96M32 723 aa17.15■□□□□ 0.34
UPF1-203ENST00000594504 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.15■□□□□ 0.34
UPF1-203ENST00000594504 TMOD3Q9NYL9 352 aa17.15■□□□□ 0.34
UPF1-203ENST00000594504 LOC102724428A0A0B4J2F2 783 aa17.14■□□□□ 0.33
UPF1-203ENST00000594504 SIK1P57059 783 aa17.14■□□□□ 0.33
UPF1-203ENST00000594504 FLAD1Q8NFF5 587 aa17.14■□□□□ 0.33
UPF1-203ENST00000594504 ITPK1Q13572 414 aa17.13■□□□□ 0.33
UPF1-203ENST00000594504 ATG3Q9NT62 314 aa17.13■□□□□ 0.33
UPF1-203ENST00000594504 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.12■□□□□ 0.33
UPF1-203ENST00000594504 ATP6V1AP38606 617 aa17.12■□□□□ 0.33
UPF1-203ENST00000594504 UBR3Q6ZT12 1888 aa17.12■□□□□ 0.33
UPF1-203ENST00000594504 IGSF1Q8N6C5 1336 aa17.11■□□□□ 0.33
UPF1-203ENST00000594504 MORC1Q86VD1 984 aa17.1■□□□□ 0.33
UPF1-203ENST00000594504 WWC3Q9ULE0 1092 aa17.1■□□□□ 0.33
UPF1-203ENST00000594504 HMGB2P26583 209 aaKnown RBP17.09■□□□□ 0.33
UPF1-203ENST00000594504 AEBP1Q8IUX7 1158 aa17.09■□□□□ 0.33
UPF1-203ENST00000594504 GNPATO15228 680 aa17.08■□□□□ 0.32
UPF1-203ENST00000594504 SLC4A9Q96Q91 983 aa17.08■□□□□ 0.32
UPF1-203ENST00000594504 RBM42Q9BTD8 480 aaKnown RBP17.08■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 75.3 ms