RNA–Protein interactions for RNA: ENST00000593251.5

RETREG3-212, Transcript of reticulophagy regulator family member 3, humanhuman

TSL 4

Gene RETREG3, Length 565 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3-212ENST00000593251 KIF20BQ96Q89 1820 aa24.56■■□□□ 1.52
RETREG3-212ENST00000593251 RRS1Q15050 365 aaKnown RBP24.55■■□□□ 1.52
RETREG3-212ENST00000593251 ZCRB1Q8TBF4 217 aaKnown RBP24.54■■□□□ 1.52
RETREG3-212ENST00000593251 GGNBP2Q9H3C7 697 aa24.54■■□□□ 1.52
RETREG3-212ENST00000593251 COL24A1Q17RW2 1714 aa24.53■■□□□ 1.52
RETREG3-212ENST00000593251 SLC27A3Q5K4L6 730 aa24.53■■□□□ 1.52
RETREG3-212ENST00000593251 USHBP1Q8N6Y0 703 aa24.53■■□□□ 1.52
RETREG3-212ENST00000593251 NSD2O96028 1365 aa24.53■■□□□ 1.52
RETREG3-212ENST00000593251 RTL1A6NKG5 1358 aa24.52■■□□□ 1.52
RETREG3-212ENST00000593251 FYB1O15117 783 aa24.51■■□□□ 1.51
RETREG3-212ENST00000593251 NBPF6Q5VWK0 638 aa24.51■■□□□ 1.51
RETREG3-212ENST00000593251 NBPF4Q96M43 638 aa24.51■■□□□ 1.51
RETREG3-212ENST00000593251 PNPLA7Q6ZV29 1317 aa24.51■■□□□ 1.51
RETREG3-212ENST00000593251 SLC24A1O60721 1099 aa24.5■■□□□ 1.51
RETREG3-212ENST00000593251 KLHL34Q8N239 644 aa24.5■■□□□ 1.51
RETREG3-212ENST00000593251 USP47Q96K76 1375 aa24.5■■□□□ 1.51
RETREG3-212ENST00000593251 TMF1P82094 1093 aa24.49■■□□□ 1.51
RETREG3-212ENST00000593251 ZNF784Q8NCA9 323 aaPredicted RBP24.49■■□□□ 1.51
RETREG3-212ENST00000593251 TFCP2L1Q9NZI6 479 aa24.49■■□□□ 1.51
RETREG3-212ENST00000593251 MAP3K5Q99683 1374 aa24.49■■□□□ 1.51
RETREG3-212ENST00000593251 SLC16A10Q8TF71 515 aa24.47■■□□□ 1.51
RETREG3-212ENST00000593251 SMG6Q86US8 1419 aaKnown RBP24.45■■□□□ 1.51
RETREG3-212ENST00000593251 CCNL1Q9UK58 526 aaPredicted RBP24.45■■□□□ 1.5
RETREG3-212ENST00000593251 POLD1P28340 1107 aa24.44■■□□□ 1.5
RETREG3-212ENST00000593251 HSP90AB2PQ58FF8 381 aa24.44■■□□□ 1.5
RETREG3-212ENST00000593251 RAPGEF4Q8WZA2 1011 aa24.44■■□□□ 1.5
RETREG3-212ENST00000593251 C5P01031 1676 aa24.43■■□□□ 1.5
RETREG3-212ENST00000593251 ITGB4P16144 1822 aa24.42■■□□□ 1.5
RETREG3-212ENST00000593251 TAF1LQ8IZX4 1826 aa24.42■■□□□ 1.5
RETREG3-212ENST00000593251 GPR162Q16538 588 aa24.42■■□□□ 1.5
RETREG3-212ENST00000593251 TATP17735 454 aaPredicted RBP24.41■■□□□ 1.5
RETREG3-212ENST00000593251 TOGARAM1Q9Y4F4 1720 aa24.41■■□□□ 1.5
RETREG3-212ENST00000593251 INSRP06213 1382 aa24.41■■□□□ 1.5
RETREG3-212ENST00000593251 CGNL1Q0VF96 1302 aa24.4■■□□□ 1.5
RETREG3-212ENST00000593251 MSH5O43196 834 aa24.4■■□□□ 1.5
RETREG3-212ENST00000593251 PELP1Q8IZL8 1130 aaKnown RBP24.4■■□□□ 1.5
RETREG3-212ENST00000593251 FLT4P35916 1363 aa24.4■■□□□ 1.5
RETREG3-212ENST00000593251 GOLGB1Q14789 3259 aaKnown RBP24.38■■□□□ 1.49
RETREG3-212ENST00000593251 COL23A1Q86Y22 540 aaPredicted RBP24.38■■□□□ 1.49
RETREG3-212ENST00000593251 NLGN2Q8NFZ4 835 aa24.38■■□□□ 1.49
RETREG3-212ENST00000593251 CARD14Q9BXL6 1004 aa24.37■■□□□ 1.49
RETREG3-212ENST00000593251 PKD1L3Q7Z443 1732 aa24.37■■□□□ 1.49
RETREG3-212ENST00000593251 MAP2P11137 1827 aaKnown RBP24.37■■□□□ 1.49
RETREG3-212ENST00000593251 PCDH11XQ9BZA7 1347 aa24.36■■□□□ 1.49
RETREG3-212ENST00000593251 PCDH11YQ9BZA8 1340 aa24.36■■□□□ 1.49
RETREG3-212ENST00000593251 NSD3Q9BZ95 1437 aa24.36■■□□□ 1.49
RETREG3-212ENST00000593251 CDCA8Q53HL2 280 aa24.36■■□□□ 1.49
RETREG3-212ENST00000593251 EMILIN1Q9Y6C2 1016 aa24.36■■□□□ 1.49
RETREG3-212ENST00000593251 MSL1Q68DK7 614 aa24.35■■□□□ 1.49
RETREG3-212ENST00000593251 CYP27B1O15528 508 aa24.34■■□□□ 1.49
RETREG3-212ENST00000593251 TRIM26Q12899 539 aaPredicted RBP24.34■■□□□ 1.49
RETREG3-212ENST00000593251 MPRIPQ6WCQ1 1025 aa24.34■■□□□ 1.49
RETREG3-212ENST00000593251 ANKRD26Q9UPS8 1709 aa24.34■■□□□ 1.49
RETREG3-212ENST00000593251 KIF24Q5T7B8 1368 aa24.33■■□□□ 1.49
RETREG3-212ENST00000593251 PALLDQ8WX93 1383 aa24.32■■□□□ 1.48
RETREG3-212ENST00000593251 PPM1GO15355 546 aaPredicted RBP24.31■■□□□ 1.48
RETREG3-212ENST00000593251 C4BP0C0L5 1744 aa24.31■■□□□ 1.48
RETREG3-212ENST00000593251 UBR3Q6ZT12 1888 aa24.29■■□□□ 1.48
RETREG3-212ENST00000593251 YBX3P16989 372 aaKnown RBP eCLIP24.27■■□□□ 1.48
RETREG3-212ENST00000593251 NCAPD2Q15021 1401 aa24.27■■□□□ 1.48
RETREG3-212ENST00000593251 C1QTNF8P60827 252 aa24.24■■□□□ 1.47
RETREG3-212ENST00000593251 SMIM5Q71RC9 77 aa24.24■■□□□ 1.47
RETREG3-212ENST00000593251 AMIGO3Q86WK7 504 aa24.24■■□□□ 1.47
RETREG3-212ENST00000593251 PIGBQ92521 554 aa24.24■■□□□ 1.47
RETREG3-212ENST00000593251 SENP3-EIF4A1A0A087X0R7 540 aa24.23■■□□□ 1.47
RETREG3-212ENST00000593251 SMARCC1Q92922 1105 aaPredicted RBP24.23■■□□□ 1.47
RETREG3-212ENST00000593251 EYA1Q99502 592 aa24.23■■□□□ 1.47
RETREG3-212ENST00000593251 POLR3GLQ9BT43 218 aa24.23■■□□□ 1.47
RETREG3-212ENST00000593251 WASHC2AQ641Q2 1341 aa24.22■■□□□ 1.47
RETREG3-212ENST00000593251 FLAD1Q8NFF5 587 aa24.22■■□□□ 1.47
RETREG3-212ENST00000593251 AK7Q96M32 723 aa24.22■■□□□ 1.47
RETREG3-212ENST00000593251 SPG7Q9UQ90 795 aa24.22■■□□□ 1.47
RETREG3-212ENST00000593251 PHF14O94880 888 aa24.21■■□□□ 1.47
RETREG3-212ENST00000593251 NKX1-1Q15270 411 aaPredicted RBP24.21■■□□□ 1.47
RETREG3-212ENST00000593251 GRIN3BO60391 1043 aa24.19■■□□□ 1.46
RETREG3-212ENST00000593251 POLKQ9UBT6 870 aa24.19■■□□□ 1.46
RETREG3-212ENST00000593251 GIGYF1O75420 1035 aaPredicted RBP24.18■■□□□ 1.46
RETREG3-212ENST00000593251 TNNT2P45379 298 aaPredicted RBP24.18■■□□□ 1.46
RETREG3-212ENST00000593251 HMGB2P26583 209 aaKnown RBP24.17■■□□□ 1.46
RETREG3-212ENST00000593251 LINC00116Q8NCU8 138 aa24.17■■□□□ 1.46
RETREG3-212ENST00000593251 CD2APQ9Y5K6 639 aa24.17■■□□□ 1.46
RETREG3-212ENST00000593251 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP24.16■■□□□ 1.46
RETREG3-212ENST00000593251 LOC102724428A0A0B4J2F2 783 aa24.16■■□□□ 1.46
RETREG3-212ENST00000593251 SIK1P57059 783 aa24.16■■□□□ 1.46
RETREG3-212ENST00000593251 TMOD3Q9NYL9 352 aa24.16■■□□□ 1.46
RETREG3-212ENST00000593251 ASAP1Q9ULH1 1129 aa24.16■■□□□ 1.46
RETREG3-212ENST00000593251 PHKG2P15735 406 aa24.15■■□□□ 1.46
RETREG3-212ENST00000593251 EIF4A2Q14240 407 aaKnown RBP24.14■■□□□ 1.45
RETREG3-212ENST00000593251 IFNL2Q8IZJ0 200 aa24.14■■□□□ 1.45
RETREG3-212ENST00000593251 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP24.14■■□□□ 1.45
RETREG3-212ENST00000593251 WWC3Q9ULE0 1092 aa24.14■■□□□ 1.45
RETREG3-212ENST00000593251 TIMELESSQ9UNS1 1208 aa24.14■■□□□ 1.45
RETREG3-212ENST00000593251 ITPK1Q13572 414 aa24.13■■□□□ 1.45
RETREG3-212ENST00000593251 PCGF6Q9BYE7 350 aa24.13■■□□□ 1.45
RETREG3-212ENST00000593251 SSFA2P28290 1259 aa24.11■■□□□ 1.45
RETREG3-212ENST00000593251 ATP6V1AP38606 617 aa24.11■■□□□ 1.45
RETREG3-212ENST00000593251 GNPATO15228 680 aa24.1■■□□□ 1.45
RETREG3-212ENST00000593251 ATG3Q9NT62 314 aa24.1■■□□□ 1.45
RETREG3-212ENST00000593251 ATP10DQ9P241 1426 aa24.1■■□□□ 1.45
RETREG3-212ENST00000593251 IGSF1Q8N6C5 1336 aa24.09■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms