RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 RGPD2P0DJD1 1756 aa14.52□□□□□ -0.08
LIG3-212ENST00000590181 FYB1O15117 783 aa14.52□□□□□ -0.09
LIG3-212ENST00000590181 CEP350Q5VT06 3117 aa14.51□□□□□ -0.09
LIG3-212ENST00000590181 RTL1A6NKG5 1358 aa14.51□□□□□ -0.09
LIG3-212ENST00000590181 NLRP2Q9NX02 1062 aa14.51□□□□□ -0.09
LIG3-212ENST00000590181 CGNL1Q0VF96 1302 aa14.5□□□□□ -0.09
LIG3-212ENST00000590181 C1QTNF8P60827 252 aa14.5□□□□□ -0.09
LIG3-212ENST00000590181 KLHL34Q8N239 644 aa14.5□□□□□ -0.09
LIG3-212ENST00000590181 C5P01031 1676 aa14.49□□□□□ -0.09
LIG3-212ENST00000590181 IL2RBP14784 551 aa14.49□□□□□ -0.09
LIG3-212ENST00000590181 AMPHP49418 695 aa14.48□□□□□ -0.09
LIG3-212ENST00000590181 GPR162Q16538 588 aa14.48□□□□□ -0.09
LIG3-212ENST00000590181 ANKRD24Q8TF21 1146 aa14.48□□□□□ -0.09
LIG3-212ENST00000590181 LRRC4BQ9NT99 713 aa14.47□□□□□ -0.09
LIG3-212ENST00000590181 KIF20BQ96Q89 1820 aa14.46□□□□□ -0.09
LIG3-212ENST00000590181 GIGYF1O75420 1035 aaPredicted RBP14.46□□□□□ -0.09
LIG3-212ENST00000590181 HSPA5P11021 654 aaKnown RBP14.46□□□□□ -0.09
LIG3-212ENST00000590181 HMGB2P26583 209 aaKnown RBP14.46□□□□□ -0.09
LIG3-212ENST00000590181 POLD1P28340 1107 aa14.46□□□□□ -0.09
LIG3-212ENST00000590181 PELP1Q8IZL8 1130 aaKnown RBP14.46□□□□□ -0.09
LIG3-212ENST00000590181 PNPLA7Q6ZV29 1317 aa14.45□□□□□ -0.1
LIG3-212ENST00000590181 HOXC9P31274 260 aa14.45□□□□□ -0.1
LIG3-212ENST00000590181 SMG6Q86US8 1419 aaKnown RBP14.45□□□□□ -0.1
LIG3-212ENST00000590181 AKT1S1Q96B36 256 aa14.45□□□□□ -0.1
LIG3-212ENST00000590181 TAF1LQ8IZX4 1826 aa14.45□□□□□ -0.1
LIG3-212ENST00000590181 MAP3K19Q56UN5 1328 aa14.44□□□□□ -0.1
LIG3-212ENST00000590181 CARD14Q9BXL6 1004 aa14.44□□□□□ -0.1
LIG3-212ENST00000590181 NSD2O96028 1365 aa14.44□□□□□ -0.1
LIG3-212ENST00000590181 SLC27A3Q5K4L6 730 aa14.43□□□□□ -0.1
LIG3-212ENST00000590181 SLC16A10Q8TF71 515 aa14.43□□□□□ -0.1
LIG3-212ENST00000590181 GGNBP2Q9H3C7 697 aa14.43□□□□□ -0.1
LIG3-212ENST00000590181 INSRP06213 1382 aa14.43□□□□□ -0.1
LIG3-212ENST00000590181 FLT4P35916 1363 aa14.43□□□□□ -0.1
LIG3-212ENST00000590181 MEGF6O75095 1541 aa14.42□□□□□ -0.1
LIG3-212ENST00000590181 NLGN2Q8NFZ4 835 aa14.42□□□□□ -0.1
LIG3-212ENST00000590181 NSD3Q9BZ95 1437 aa14.41□□□□□ -0.1
LIG3-212ENST00000590181 TOGARAM1Q9Y4F4 1720 aa14.41□□□□□ -0.1
LIG3-212ENST00000590181 PLEKHG2Q9H7P9 1386 aa14.4□□□□□ -0.1
LIG3-212ENST00000590181 DDX54Q8TDD1 881 aaKnown RBP14.4□□□□□ -0.1
LIG3-212ENST00000590181 SYTL4Q96C24 671 aaPredicted RBP14.4□□□□□ -0.1
LIG3-212ENST00000590181 TFCP2L1Q9NZI6 479 aa14.4□□□□□ -0.1
LIG3-212ENST00000590181 KCNQ4P56696 695 aa14.39□□□□□ -0.11
LIG3-212ENST00000590181 LTV1Q96GA3 475 aaPredicted RBP14.39□□□□□ -0.11
LIG3-212ENST00000590181 WASHC2AQ641Q2 1341 aa14.39□□□□□ -0.11
LIG3-212ENST00000590181 MAP2P11137 1827 aaKnown RBP14.38□□□□□ -0.11
LIG3-212ENST00000590181 PANK3Q9H999 370 aa14.38□□□□□ -0.11
LIG3-212ENST00000590181 KNSTRNQ9Y448 316 aa14.38□□□□□ -0.11
LIG3-212ENST00000590181 ATP10DQ9P241 1426 aa14.38□□□□□ -0.11
LIG3-212ENST00000590181 ITGB4P16144 1822 aa14.38□□□□□ -0.11
LIG3-212ENST00000590181 RRS1Q15050 365 aaKnown RBP14.37□□□□□ -0.11
LIG3-212ENST00000590181 ZCRB1Q8TBF4 217 aaKnown RBP14.37□□□□□ -0.11
LIG3-212ENST00000590181 RAPGEF4Q8WZA2 1011 aa14.37□□□□□ -0.11
LIG3-212ENST00000590181 C4BP0C0L5 1744 aa14.37□□□□□ -0.11
LIG3-212ENST00000590181 ANKRD26Q9UPS8 1709 aa14.37□□□□□ -0.11
LIG3-212ENST00000590181 UBR3Q6ZT12 1888 aa14.37□□□□□ -0.11
LIG3-212ENST00000590181 PKD1L3Q7Z443 1732 aa14.36□□□□□ -0.11
LIG3-212ENST00000590181 YBX3P16989 372 aaKnown RBP eCLIP14.36□□□□□ -0.111e-6■■□□□ 11.7
LIG3-212ENST00000590181 POLR3GLQ9BT43 218 aa14.36□□□□□ -0.11
LIG3-212ENST00000590181 CCNL1Q9UK58 526 aaPredicted RBP14.36□□□□□ -0.11
LIG3-212ENST00000590181 MSH5O43196 834 aa14.35□□□□□ -0.11
LIG3-212ENST00000590181 PRIM1P49642 420 aaKnown RBP14.35□□□□□ -0.11
LIG3-212ENST00000590181 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.35□□□□□ -0.11
LIG3-212ENST00000590181 TATP17735 454 aaPredicted RBP14.34□□□□□ -0.11
LIG3-212ENST00000590181 HSP90AB2PQ58FF8 381 aa14.34□□□□□ -0.11
LIG3-212ENST00000590181 IFFO2Q5TF58 517 aa14.34□□□□□ -0.11
LIG3-212ENST00000590181 NBPF6Q5VWK0 638 aa14.34□□□□□ -0.11
LIG3-212ENST00000590181 MSL1Q68DK7 614 aa14.34□□□□□ -0.11
LIG3-212ENST00000590181 NBPF4Q96M43 638 aa14.34□□□□□ -0.11
LIG3-212ENST00000590181 GRIN3BO60391 1043 aa14.33□□□□□ -0.12
LIG3-212ENST00000590181 POLKQ9UBT6 870 aa14.33□□□□□ -0.12
LIG3-212ENST00000590181 ADCY9O60503 1353 aa14.33□□□□□ -0.12
LIG3-212ENST00000590181 PCDH11XQ9BZA7 1347 aa14.32□□□□□ -0.12
LIG3-212ENST00000590181 PCDH11YQ9BZA8 1340 aa14.32□□□□□ -0.12
LIG3-212ENST00000590181 CICQ96RK0 1608 aaPredicted RBP14.31□□□□□ -0.12
LIG3-212ENST00000590181 FBLN1P23142 703 aa14.31□□□□□ -0.12
LIG3-212ENST00000590181 MORC1Q86VD1 984 aa14.31□□□□□ -0.12
LIG3-212ENST00000590181 COL23A1Q86Y22 540 aaPredicted RBP14.31□□□□□ -0.12
LIG3-212ENST00000590181 SPG7Q9UQ90 795 aa14.31□□□□□ -0.12
LIG3-212ENST00000590181 NCAPD2Q15021 1401 aa14.31□□□□□ -0.12
LIG3-212ENST00000590181 PPM1GO15355 546 aaPredicted RBP14.3□□□□□ -0.12
LIG3-212ENST00000590181 EMILIN1Q9Y6C2 1016 aa14.3□□□□□ -0.12
LIG3-212ENST00000590181 KIF7Q2M1P5 1343 aa14.3□□□□□ -0.12
LIG3-212ENST00000590181 NPC1L1Q9UHC9 1359 aa14.3□□□□□ -0.12
LIG3-212ENST00000590181 PALLDQ8WX93 1383 aa14.29□□□□□ -0.12
LIG3-212ENST00000590181 KIAA1551Q9HCM1 1747 aa14.29□□□□□ -0.12
LIG3-212ENST00000590181 USHBP1Q8N6Y0 703 aa14.28□□□□□ -0.12
LIG3-212ENST00000590181 GPBP1L1Q9HC44 474 aaPredicted RBP14.28□□□□□ -0.12
LIG3-212ENST00000590181 KIF13BQ9NQT8 1826 aa14.27□□□□□ -0.12
LIG3-212ENST00000590181 PER1O15534 1290 aaPredicted RBP14.26□□□□□ -0.13
LIG3-212ENST00000590181 NKX1-1Q15270 411 aaPredicted RBP14.26□□□□□ -0.13
LIG3-212ENST00000590181 AMER1Q5JTC6 1135 aaPredicted RBP14.26□□□□□ -0.13
LIG3-212ENST00000590181 ZNF526Q8TF50 670 aaPredicted RBP14.26□□□□□ -0.13
LIG3-212ENST00000590181 EYA1Q99502 592 aa14.26□□□□□ -0.13
LIG3-212ENST00000590181 CD2APQ9Y5K6 639 aa14.26□□□□□ -0.13
LIG3-212ENST00000590181 N4BP2Q86UW6 1770 aaPredicted RBP14.25□□□□□ -0.13
LIG3-212ENST00000590181 AMOTQ4VCS5 1084 aa14.25□□□□□ -0.13
LIG3-212ENST00000590181 IGSF1Q8N6C5 1336 aa14.24□□□□□ -0.13
LIG3-212ENST00000590181 HSP90AB1P08238 724 aaKnown RBP14.24□□□□□ -0.13
LIG3-212ENST00000590181 FLAD1Q8NFF5 587 aa14.24□□□□□ -0.13
LIG3-212ENST00000590181 SMARCC1Q92922 1105 aaPredicted RBP14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms