RNA–Protein interactions for RNA: ENST00000589349.5

DNMT1-219, Transcript of DNA methyltransferase 1, humanhuman

TSL 4

Gene DNMT1, Length 603 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DNMT1-219ENST00000589349 C6orf229H3BNL8 230 aa12.47□□□□□ -0.41
DNMT1-219ENST00000589349 TUSC1Q2TAM9 212 aa12.47□□□□□ -0.41
DNMT1-219ENST00000589349 MYO3AQ8NEV4 1616 aa12.47□□□□□ -0.41
DNMT1-219ENST00000589349 CEP170BQ9Y4F5 1589 aaPredicted RBP12.47□□□□□ -0.41
DNMT1-219ENST00000589349 PZPP20742 1482 aa12.46□□□□□ -0.41
DNMT1-219ENST00000589349 PTPRTO14522 1441 aa12.46□□□□□ -0.41
DNMT1-219ENST00000589349 SPDYE5A6NIY4 337 aa12.46□□□□□ -0.41
DNMT1-219ENST00000589349 S1PR4O95977 384 aa12.46□□□□□ -0.41
DNMT1-219ENST00000589349 SKIV2LQ15477 1246 aaKnown RBP12.46□□□□□ -0.41
DNMT1-219ENST00000589349 RETREG3Q86VR2 466 aa12.46□□□□□ -0.41
DNMT1-219ENST00000589349 IL27Q8NEV9 243 aa12.46□□□□□ -0.41
DNMT1-219ENST00000589349 A2ML1A8K2U0 1454 aa12.46□□□□□ -0.42
DNMT1-219ENST00000589349 TCOF1Q13428 1488 aaKnown RBP12.46□□□□□ -0.42
DNMT1-219ENST00000589349 SHANK2Q9UPX8 1470 aa12.46□□□□□ -0.42
DNMT1-219ENST00000589349 STRCQ7RTU9 1775 aa12.46□□□□□ -0.42
DNMT1-219ENST00000589349 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.45□□□□□ -0.42
DNMT1-219ENST00000589349 MTMR2Q13614 643 aa12.45□□□□□ -0.42
DNMT1-219ENST00000589349 PRPF38BQ5VTL8 546 aaKnown RBP12.45□□□□□ -0.42
DNMT1-219ENST00000589349 ERBINQ96RT1 1412 aa12.45□□□□□ -0.42
DNMT1-219ENST00000589349 DNMT1P26358 1616 aaKnown RBP12.44□□□□□ -0.42
DNMT1-219ENST00000589349 ZNF335Q9H4Z2 1342 aaPredicted RBP12.44□□□□□ -0.42
DNMT1-219ENST00000589349 ABCC3O15438 1527 aa12.44□□□□□ -0.42
DNMT1-219ENST00000589349 FAM160A2Q8N612 972 aaPredicted RBP12.44□□□□□ -0.42
DNMT1-219ENST00000589349 ZBTB3Q9H5J0 574 aa12.44□□□□□ -0.42
DNMT1-219ENST00000589349 POLR3EQ9NVU0 708 aa12.44□□□□□ -0.42
DNMT1-219ENST00000589349 LIMD1Q9UGP4 676 aa12.44□□□□□ -0.42
DNMT1-219ENST00000589349 FAM135AQ9P2D6 1515 aa12.43□□□□□ -0.42
DNMT1-219ENST00000589349 SYMPKQ92797 1274 aaKnown RBP12.43□□□□□ -0.42
DNMT1-219ENST00000589349 GOPCQ9HD26 462 aa12.43□□□□□ -0.42
DNMT1-219ENST00000589349 CFAP65Q6ZU64 1925 aaKnown RBP12.43□□□□□ -0.42
DNMT1-219ENST00000589349 CROCC2H7BZ55 1655 aa12.42□□□□□ -0.42
DNMT1-219ENST00000589349 EIF2AK4Q9P2K8 1649 aaKnown RBP12.42□□□□□ -0.42
DNMT1-219ENST00000589349 RGS20O76081 388 aa12.42□□□□□ -0.42
DNMT1-219ENST00000589349 CSPP1Q1MSJ5 1256 aa12.42□□□□□ -0.42
DNMT1-219ENST00000589349 PCDHB15Q9Y5E8 787 aa12.42□□□□□ -0.42
DNMT1-219ENST00000589349 UBAP1LF5GYI3 381 aa12.41□□□□□ -0.42
DNMT1-219ENST00000589349 EID1Q9Y6B2 187 aa12.41□□□□□ -0.42
DNMT1-219ENST00000589349 RNF17Q9BXT8 1623 aaKnown RBP12.4□□□□□ -0.42
DNMT1-219ENST00000589349 NLRP1Q9C000 1473 aa12.4□□□□□ -0.42
DNMT1-219ENST00000589349 CEP152O94986 1710 aa12.4□□□□□ -0.42
DNMT1-219ENST00000589349 UGGT1Q9NYU2 1555 aa12.4□□□□□ -0.42
DNMT1-219ENST00000589349 ANKRD50Q9ULJ7 1429 aa12.4□□□□□ -0.42
DNMT1-219ENST00000589349 RNF223E7ERA6 249 aa12.4□□□□□ -0.42
DNMT1-219ENST00000589349 TXNDC2Q86VQ3 553 aa12.4□□□□□ -0.42
DNMT1-219ENST00000589349 ANKLE1Q8NAG6 615 aa12.4□□□□□ -0.42
DNMT1-219ENST00000589349 ERVK-7P63135 1459 aa12.4□□□□□ -0.43
DNMT1-219ENST00000589349 PLA2R1Q13018 1463 aa12.4□□□□□ -0.43
DNMT1-219ENST00000589349 HRCP23327 699 aa12.39□□□□□ -0.43
DNMT1-219ENST00000589349 PRDM9Q9NQV7 894 aa12.39□□□□□ -0.43
DNMT1-219ENST00000589349 ZNF142P52746 1687 aaPredicted RBP12.38□□□□□ -0.43
DNMT1-219ENST00000589349 ZC3H13Q5T200 1668 aaKnown RBP12.38□□□□□ -0.43
DNMT1-219ENST00000589349 NUTM2BA6NNL0 878 aaPredicted RBP12.38□□□□□ -0.43
DNMT1-219ENST00000589349 NUTM2EB1AL46 878 aaPredicted RBP12.38□□□□□ -0.43
DNMT1-219ENST00000589349 MMP16P51512 607 aa12.38□□□□□ -0.43
DNMT1-219ENST00000589349 NUTM2DQ5VT03 806 aaPredicted RBP12.38□□□□□ -0.43
DNMT1-219ENST00000589349 NUTM2AQ8IVF1 878 aaPredicted RBP12.38□□□□□ -0.43
DNMT1-219ENST00000589349 LILRB3O75022 631 aa12.37□□□□□ -0.43
DNMT1-219ENST00000589349 DXOO77932 396 aaKnown RBP12.37□□□□□ -0.43
DNMT1-219ENST00000589349 JUNDP17535 347 aa12.37□□□□□ -0.43
DNMT1-219ENST00000589349 PRR7Q8TB68 274 aa12.37□□□□□ -0.43
DNMT1-219ENST00000589349 PCMTD1Q96MG8 357 aaPredicted RBP12.37□□□□□ -0.43
DNMT1-219ENST00000589349 PIP4K2BP78356 416 aa12.36□□□□□ -0.43
DNMT1-219ENST00000589349 CABLES1Q8TDN4 633 aa12.36□□□□□ -0.43
DNMT1-219ENST00000589349 MROH1Q8NDA8 1641 aa12.36□□□□□ -0.43
DNMT1-219ENST00000589349 NPHP4O75161 1426 aaPredicted RBP12.36□□□□□ -0.43
DNMT1-219ENST00000589349 PPEF1O14829 653 aaPredicted RBP12.35□□□□□ -0.43
DNMT1-219ENST00000589349 PPP1R15AO75807 674 aaPredicted RBP12.35□□□□□ -0.43
DNMT1-219ENST00000589349 IDI1Q13907 227 aa12.35□□□□□ -0.43
DNMT1-219ENST00000589349 QPCTQ16769 361 aa12.35□□□□□ -0.43
DNMT1-219ENST00000589349 DESI1Q6ICB0 168 aa12.35□□□□□ -0.43
DNMT1-219ENST00000589349 ADGRL2O95490 1459 aa12.34□□□□□ -0.43
DNMT1-219ENST00000589349 NUP155O75694 1391 aa12.34□□□□□ -0.43
DNMT1-219ENST00000589349 PRDM15P57071 1507 aaPredicted RBP12.34□□□□□ -0.43
DNMT1-219ENST00000589349 TRIM52Q96A61 297 aa12.34□□□□□ -0.43
DNMT1-219ENST00000589349 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.34□□□□□ -0.43
DNMT1-219ENST00000589349 FCF1Q9Y324 198 aaKnown RBP12.34□□□□□ -0.43
DNMT1-219ENST00000589349 SPATA31D1Q6ZQQ2 1576 aa12.34□□□□□ -0.43
DNMT1-219ENST00000589349 PROCA1Q8NCQ7 364 aaPredicted RBP12.33□□□□□ -0.44
DNMT1-219ENST00000589349 ARHGAP31Q2M1Z3 1444 aa12.32□□□□□ -0.44
DNMT1-219ENST00000589349 TOM1O60784 492 aa12.32□□□□□ -0.44
DNMT1-219ENST00000589349 LTKP29376 864 aa12.32□□□□□ -0.44
DNMT1-219ENST00000589349 SLC52A1Q9NWF4 448 aa12.32□□□□□ -0.44
DNMT1-219ENST00000589349 ROCK1Q13464 1354 aa12.31□□□□□ -0.44
DNMT1-219ENST00000589349 LTBP4Q8N2S1 1624 aa12.31□□□□□ -0.44
DNMT1-219ENST00000589349 CFAP99D6REC4 459 aa12.31□□□□□ -0.44
DNMT1-219ENST00000589349 POLR1AO95602 1720 aaPredicted RBP12.31□□□□□ -0.44
DNMT1-219ENST00000589349 HELBQ8NG08 1087 aaPredicted RBP12.3□□□□□ -0.44
DNMT1-219ENST00000589349 SLC26A8Q96RN1 970 aa12.3□□□□□ -0.44
DNMT1-219ENST00000589349 V9GY48 417 aaPredicted RBP12.3□□□□□ -0.44
DNMT1-219ENST00000589349 SCAF11Q99590 1463 aaKnown RBP12.29□□□□□ -0.44
DNMT1-219ENST00000589349 PTPRNQ16849 979 aa12.29□□□□□ -0.44
DNMT1-219ENST00000589349 RTL5Q5HYW3 569 aaPredicted RBP12.29□□□□□ -0.44
DNMT1-219ENST00000589349 PPP2R2DQ66LE6 453 aa12.29□□□□□ -0.44
DNMT1-219ENST00000589349 PRKD2Q9BZL6 878 aa12.29□□□□□ -0.44
DNMT1-219ENST00000589349 DEPDC5O75140 1603 aa12.29□□□□□ -0.44
DNMT1-219ENST00000589349 ZNF326Q5BKZ1 582 aaKnown RBP12.28□□□□□ -0.44
DNMT1-219ENST00000589349 TSC1Q92574 1164 aa12.28□□□□□ -0.44
DNMT1-219ENST00000589349 NUDT12Q9BQG2 462 aa12.28□□□□□ -0.44
DNMT1-219ENST00000589349 TMEM2Q9UHN6 1383 aa12.28□□□□□ -0.44
DNMT1-219ENST00000589349 NEURL4Q96JN8 1562 aa12.27□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms