RNA–Protein interactions for RNA: ENST00000586457.1

CLIP3-203, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 1 (best)

Gene CLIP3, Length 433 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-203ENST00000586457 ZEB1P37275 1124 aaPredicted RBP14.72□□□□□ -0.05
CLIP3-203ENST00000586457 EIF4A2Q14240 407 aaKnown RBP14.72□□□□□ -0.05
CLIP3-203ENST00000586457 EYA1Q99502 592 aa14.72□□□□□ -0.05
CLIP3-203ENST00000586457 BCL9O00512 1426 aa14.72□□□□□ -0.05
CLIP3-203ENST00000586457 ANKRD26Q9UPS8 1709 aa14.72□□□□□ -0.05
CLIP3-203ENST00000586457 R3HDM1Q15032 1099 aaKnown RBP14.71□□□□□ -0.05
CLIP3-203ENST00000586457 KAT6BQ8WYB5 2073 aa14.7□□□□□ -0.06
CLIP3-203ENST00000586457 PEAK1Q9H792 1746 aa14.7□□□□□ -0.06
CLIP3-203ENST00000586457 PRIM1P49642 420 aaKnown RBP14.7□□□□□ -0.06
CLIP3-203ENST00000586457 MTHFSP49914 203 aa14.7□□□□□ -0.06
CLIP3-203ENST00000586457 RGPD2P0DJD1 1756 aa14.7□□□□□ -0.06
CLIP3-203ENST00000586457 TNS1Q9HBL0 1735 aaKnown RBP14.69□□□□□ -0.06
CLIP3-203ENST00000586457 PTF1AQ7RTS3 328 aa14.69□□□□□ -0.06
CLIP3-203ENST00000586457 MEGF6O75095 1541 aa14.68□□□□□ -0.06
CLIP3-203ENST00000586457 TXNRD1Q16881 649 aa14.68□□□□□ -0.06
CLIP3-203ENST00000586457 PLEKHO1Q53GL0 409 aaPredicted RBP14.68□□□□□ -0.06
CLIP3-203ENST00000586457 CFAP53Q96M91 514 aa14.68□□□□□ -0.06
CLIP3-203ENST00000586457 HMGB2P26583 209 aaKnown RBP14.67□□□□□ -0.06
CLIP3-203ENST00000586457 STK32BQ9NY57 414 aa14.67□□□□□ -0.06
CLIP3-203ENST00000586457 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.67□□□□□ -0.06
CLIP3-203ENST00000586457 DIAPH1O60610 1272 aaKnown RBP14.66□□□□□ -0.06
CLIP3-203ENST00000586457 SULT6B1Q6IMI4 303 aa14.66□□□□□ -0.06
CLIP3-203ENST00000586457 MPRIPQ6WCQ1 1025 aa14.66□□□□□ -0.06
CLIP3-203ENST00000586457 IFNL2Q8IZJ0 200 aa14.66□□□□□ -0.06
CLIP3-203ENST00000586457 SBF2Q86WG5 1849 aa14.66□□□□□ -0.06
CLIP3-203ENST00000586457 NPC1L1Q9UHC9 1359 aa14.65□□□□□ -0.06
CLIP3-203ENST00000586457 AMOTQ4VCS5 1084 aa14.65□□□□□ -0.06
CLIP3-203ENST00000586457 C1orf141Q5JVX7 400 aa14.65□□□□□ -0.06
CLIP3-203ENST00000586457 U2SURPO15042 1029 aaKnown RBP14.64□□□□□ -0.07
CLIP3-203ENST00000586457 HSP90AB1P08238 724 aaKnown RBP14.64□□□□□ -0.07
CLIP3-203ENST00000586457 IGSF1Q8N6C5 1336 aa14.64□□□□□ -0.07
CLIP3-203ENST00000586457 CYP27B1O15528 508 aa14.63□□□□□ -0.07
CLIP3-203ENST00000586457 IL13P35225 146 aa14.62□□□□□ -0.07
CLIP3-203ENST00000586457 SLC27A3Q5K4L6 730 aa14.62□□□□□ -0.07
CLIP3-203ENST00000586457 ZNF530Q6P9A1 599 aaPredicted RBP14.62□□□□□ -0.07
CLIP3-203ENST00000586457 PROM2Q8N271 834 aa14.62□□□□□ -0.07
CLIP3-203ENST00000586457 TMOD3Q9NYL9 352 aa14.62□□□□□ -0.07
CLIP3-203ENST00000586457 NUDCQ9Y266 331 aa14.62□□□□□ -0.07
CLIP3-203ENST00000586457 NHSQ6T4R5 1651 aa14.61□□□□□ -0.07
CLIP3-203ENST00000586457 SMARCC1Q92922 1105 aaPredicted RBP14.61□□□□□ -0.07
CLIP3-203ENST00000586457 HMOX1P09601 288 aa14.6□□□□□ -0.07
CLIP3-203ENST00000586457 PHKG2P15735 406 aa14.6□□□□□ -0.07
CLIP3-203ENST00000586457 SLC15A2Q16348 729 aa14.6□□□□□ -0.07
CLIP3-203ENST00000586457 AEBP1Q8IUX7 1158 aa14.6□□□□□ -0.07
CLIP3-203ENST00000586457 PPP1R1BQ9UD71 204 aaPredicted RBP14.6□□□□□ -0.07
CLIP3-203ENST00000586457 CCNL1Q9UK58 526 aaPredicted RBP14.6□□□□□ -0.07
CLIP3-203ENST00000586457 DDX10Q13206 875 aaKnown RBP14.59□□□□□ -0.07
CLIP3-203ENST00000586457 NKX1-1Q15270 411 aaPredicted RBP14.59□□□□□ -0.07
CLIP3-203ENST00000586457 DCAF5Q96JK2 942 aa14.59□□□□□ -0.07
CLIP3-203ENST00000586457 RGPD3A6NKT7 1758 aaPredicted RBP14.58□□□□□ -0.08
CLIP3-203ENST00000586457 RGPD4Q7Z3J3 1758 aa14.58□□□□□ -0.08
CLIP3-203ENST00000586457 CABP4P57796 275 aa14.58□□□□□ -0.08
CLIP3-203ENST00000586457 SPON1Q9HCB6 807 aa14.58□□□□□ -0.08
CLIP3-203ENST00000586457 TFCP2L1Q9NZI6 479 aa14.58□□□□□ -0.08
CLIP3-203ENST00000586457 PLEKHG2Q9H7P9 1386 aa14.58□□□□□ -0.08
CLIP3-203ENST00000586457 NCAPD2Q15021 1401 aa14.58□□□□□ -0.08
CLIP3-203ENST00000586457 BTAF1O14981 1849 aa14.57□□□□□ -0.08
CLIP3-203ENST00000586457 ERVV-2B6SEH9 535 aa14.57□□□□□ -0.08
CLIP3-203ENST00000586457 MSH5O43196 834 aa14.57□□□□□ -0.08
CLIP3-203ENST00000586457 NEFMP07197 916 aa14.57□□□□□ -0.08
CLIP3-203ENST00000586457 PPP2R1AP30153 589 aa14.57□□□□□ -0.08
CLIP3-203ENST00000586457 RREB1Q92766 1687 aa14.57□□□□□ -0.08
CLIP3-203ENST00000586457 NUP188Q5SRE5 1749 aa14.56□□□□□ -0.08
CLIP3-203ENST00000586457 DOT1LQ8TEK3 1739 aa14.56□□□□□ -0.08
CLIP3-203ENST00000586457 PIGBQ92521 554 aa14.56□□□□□ -0.08
CLIP3-203ENST00000586457 U2AF1L5P0DN76 240 aaPredicted RBP14.55□□□□□ -0.08
CLIP3-203ENST00000586457 KCNQ4P56696 695 aa14.55□□□□□ -0.08
CLIP3-203ENST00000586457 U2AF1Q01081 240 aaKnown RBP eCLIP14.55□□□□□ -0.08
CLIP3-203ENST00000586457 AKAP4Q5JQC9 854 aa14.54□□□□□ -0.08
CLIP3-203ENST00000586457 ANO8Q9HCE9 1232 aaPredicted RBP14.54□□□□□ -0.08
CLIP3-203ENST00000586457 LRRC4BQ9NT99 713 aa14.54□□□□□ -0.08
CLIP3-203ENST00000586457 PALLDQ8WX93 1383 aa14.54□□□□□ -0.08
CLIP3-203ENST00000586457 PKD1L3Q7Z443 1732 aa14.54□□□□□ -0.08
CLIP3-203ENST00000586457 SHANK3Q9BYB0 1731 aa14.54□□□□□ -0.08
CLIP3-203ENST00000586457 KDRP35968 1356 aa14.53□□□□□ -0.08
CLIP3-203ENST00000586457 ZBTB7AO95365 584 aa14.53□□□□□ -0.08
CLIP3-203ENST00000586457 RALBP1Q15311 655 aa14.53□□□□□ -0.08
CLIP3-203ENST00000586457 RBM42Q9BTD8 480 aaKnown RBP14.53□□□□□ -0.08
CLIP3-203ENST00000586457 DCAF8L1A6NGE4 600 aa14.52□□□□□ -0.09
CLIP3-203ENST00000586457 ATF5Q9Y2D1 282 aaPredicted RBP14.52□□□□□ -0.09
CLIP3-203ENST00000586457 ATP6V1AP38606 617 aa14.51□□□□□ -0.09
CLIP3-203ENST00000586457 NFATC2IPQ8NCF5 419 aa14.51□□□□□ -0.09
CLIP3-203ENST00000586457 GAS2L2Q8NHY3 880 aa14.51□□□□□ -0.09
CLIP3-203ENST00000586457 AK7Q96M32 723 aa14.51□□□□□ -0.09
CLIP3-203ENST00000586457 PNNQ9H307 717 aaKnown RBP14.51□□□□□ -0.09
CLIP3-203ENST00000586457 ASAP1Q9ULH1 1129 aa14.51□□□□□ -0.09
CLIP3-203ENST00000586457 LOC102724428A0A0B4J2F2 783 aa14.5□□□□□ -0.09
CLIP3-203ENST00000586457 SIK1P57059 783 aa14.5□□□□□ -0.09
CLIP3-203ENST00000586457 MTHFSDQ2M296 383 aaKnown RBP14.5□□□□□ -0.09
CLIP3-203ENST00000586457 FLAD1Q8NFF5 587 aa14.5□□□□□ -0.09
CLIP3-203ENST00000586457 POLD1P28340 1107 aa14.49□□□□□ -0.09
CLIP3-203ENST00000586457 ZNF827Q17R98 1081 aa14.49□□□□□ -0.09
CLIP3-203ENST00000586457 SLC16A10Q8TF71 515 aa14.49□□□□□ -0.09
CLIP3-203ENST00000586457 AKT1S1Q96B36 256 aa14.49□□□□□ -0.09
CLIP3-203ENST00000586457 MTFR1LQ9H019 292 aa14.49□□□□□ -0.09
CLIP3-203ENST00000586457 ATG3Q9NT62 314 aa14.49□□□□□ -0.09
CLIP3-203ENST00000586457 GNAT3A8MTJ3 354 aa14.48□□□□□ -0.09
CLIP3-203ENST00000586457 FCHSD2O94868 740 aa14.48□□□□□ -0.09
CLIP3-203ENST00000586457 PRKAR2BP31323 418 aa14.48□□□□□ -0.09
CLIP3-203ENST00000586457 TEFQ10587 303 aa14.48□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms