RNA–Protein interactions for RNA: ENST00000585428.1

SDF2-202, Transcript of stromal cell derived factor 2, humanhuman

TSL 1 (best)

Gene SDF2, Length 924 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF2-202ENST00000585428 PNPLA7Q6ZV29 1317 aa20.31■□□□□ 0.84
SDF2-202ENST00000585428 RRS1Q15050 365 aaKnown RBP20.31■□□□□ 0.84
SDF2-202ENST00000585428 GGNBP2Q9H3C7 697 aa20.31■□□□□ 0.84
SDF2-202ENST00000585428 BTAF1O14981 1849 aa20.31■□□□□ 0.84
SDF2-202ENST00000585428 TMF1P82094 1093 aa20.3■□□□□ 0.84
SDF2-202ENST00000585428 TFCP2L1Q9NZI6 479 aa20.3■□□□□ 0.84
SDF2-202ENST00000585428 NSD2O96028 1365 aa20.3■□□□□ 0.84
SDF2-202ENST00000585428 CGNL1Q0VF96 1302 aa20.28■□□□□ 0.84
SDF2-202ENST00000585428 RTL1A6NKG5 1358 aa20.27■□□□□ 0.84
SDF2-202ENST00000585428 HSP90AB2PQ58FF8 381 aa20.26■□□□□ 0.83
SDF2-202ENST00000585428 MEGF6O75095 1541 aa20.26■□□□□ 0.83
SDF2-202ENST00000585428 POLD1P28340 1107 aa20.25■□□□□ 0.83
SDF2-202ENST00000585428 USHBP1Q8N6Y0 703 aa20.25■□□□□ 0.83
SDF2-202ENST00000585428 RAPGEF4Q8WZA2 1011 aa20.25■□□□□ 0.83
SDF2-202ENST00000585428 CCNL1Q9UK58 526 aaPredicted RBP20.25■□□□□ 0.83
SDF2-202ENST00000585428 FAM208AQ9UK61 1670 aaKnown RBP20.24■□□□□ 0.83
SDF2-202ENST00000585428 GPR162Q16538 588 aa20.24■□□□□ 0.83
SDF2-202ENST00000585428 CARD14Q9BXL6 1004 aa20.24■□□□□ 0.83
SDF2-202ENST00000585428 INSRP06213 1382 aa20.23■□□□□ 0.83
SDF2-202ENST00000585428 CDCA8Q53HL2 280 aa20.23■□□□□ 0.83
SDF2-202ENST00000585428 USP47Q96K76 1375 aa20.22■□□□□ 0.83
SDF2-202ENST00000585428 KAT6BQ8WYB5 2073 aa20.22■□□□□ 0.83
SDF2-202ENST00000585428 TATP17735 454 aaPredicted RBP20.22■□□□□ 0.83
SDF2-202ENST00000585428 COL23A1Q86Y22 540 aaPredicted RBP20.22■□□□□ 0.83
SDF2-202ENST00000585428 KIF24Q5T7B8 1368 aa20.2■□□□□ 0.82
SDF2-202ENST00000585428 CYP27B1O15528 508 aa20.19■□□□□ 0.82
SDF2-202ENST00000585428 NLGN2Q8NFZ4 835 aa20.19■□□□□ 0.82
SDF2-202ENST00000585428 FLT4P35916 1363 aa20.18■□□□□ 0.82
SDF2-202ENST00000585428 SMG6Q86US8 1419 aaKnown RBP20.18■□□□□ 0.82
SDF2-202ENST00000585428 COL24A1Q17RW2 1714 aa20.17■□□□□ 0.82
SDF2-202ENST00000585428 QSER1Q2KHR3 1735 aa20.17■□□□□ 0.82
SDF2-202ENST00000585428 RGPD2P0DJD1 1756 aa20.17■□□□□ 0.82
SDF2-202ENST00000585428 HMGB2P26583 209 aaKnown RBP20.17■□□□□ 0.82
SDF2-202ENST00000585428 TRIM26Q12899 539 aaPredicted RBP20.17■□□□□ 0.82
SDF2-202ENST00000585428 KLHL34Q8N239 644 aa20.17■□□□□ 0.82
SDF2-202ENST00000585428 PCDH11XQ9BZA7 1347 aa20.17■□□□□ 0.82
SDF2-202ENST00000585428 PCDH11YQ9BZA8 1340 aa20.17■□□□□ 0.82
SDF2-202ENST00000585428 LY75O60449 1722 aa20.16■□□□□ 0.82
SDF2-202ENST00000585428 SHANK3Q9BYB0 1731 aa20.16■□□□□ 0.82
SDF2-202ENST00000585428 EMILIN1Q9Y6C2 1016 aa20.16■□□□□ 0.82
SDF2-202ENST00000585428 MSH5O43196 834 aa20.15■□□□□ 0.82
SDF2-202ENST00000585428 NKX1-1Q15270 411 aaPredicted RBP20.15■□□□□ 0.82
SDF2-202ENST00000585428 MPRIPQ6WCQ1 1025 aa20.15■□□□□ 0.82
SDF2-202ENST00000585428 GOLGB1Q14789 3259 aaKnown RBP20.14■□□□□ 0.82
SDF2-202ENST00000585428 DOT1LQ8TEK3 1739 aa20.14■□□□□ 0.81
SDF2-202ENST00000585428 C1QTNF8P60827 252 aa20.14■□□□□ 0.81
SDF2-202ENST00000585428 FLAD1Q8NFF5 587 aa20.14■□□□□ 0.81
SDF2-202ENST00000585428 TIMELESSQ9UNS1 1208 aa20.13■□□□□ 0.81
SDF2-202ENST00000585428 WASHC2AQ641Q2 1341 aa20.12■□□□□ 0.81
SDF2-202ENST00000585428 YBX3P16989 372 aaKnown RBP eCLIP20.12■□□□□ 0.81
SDF2-202ENST00000585428 PELP1Q8IZL8 1130 aaKnown RBP20.12■□□□□ 0.81
SDF2-202ENST00000585428 PIGBQ92521 554 aa20.12■□□□□ 0.81
SDF2-202ENST00000585428 SMARCC1Q92922 1105 aaPredicted RBP20.12■□□□□ 0.81
SDF2-202ENST00000585428 PALLDQ8WX93 1383 aa20.11■□□□□ 0.81
SDF2-202ENST00000585428 GRIN3BO60391 1043 aa20.11■□□□□ 0.81
SDF2-202ENST00000585428 MSL1Q68DK7 614 aa20.11■□□□□ 0.81
SDF2-202ENST00000585428 EYA1Q99502 592 aa20.1■□□□□ 0.81
SDF2-202ENST00000585428 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.1■□□□□ 0.81
SDF2-202ENST00000585428 CD2APQ9Y5K6 639 aa20.1■□□□□ 0.81
SDF2-202ENST00000585428 NCAPD2Q15021 1401 aa20.1■□□□□ 0.81
SDF2-202ENST00000585428 CHD4Q14839 1912 aa20.1■□□□□ 0.81
SDF2-202ENST00000585428 PPM1GO15355 546 aaPredicted RBP20.09■□□□□ 0.81
SDF2-202ENST00000585428 AMIGO3Q86WK7 504 aa20.09■□□□□ 0.81
SDF2-202ENST00000585428 POLKQ9UBT6 870 aa20.09■□□□□ 0.81
SDF2-202ENST00000585428 SPG7Q9UQ90 795 aa20.09■□□□□ 0.81
SDF2-202ENST00000585428 NSD3Q9BZ95 1437 aa20.09■□□□□ 0.81
SDF2-202ENST00000585428 TUBGCP6Q96RT7 1819 aa20.08■□□□□ 0.8
SDF2-202ENST00000585428 SMIM5Q71RC9 77 aa20.05■□□□□ 0.8
SDF2-202ENST00000585428 LOC102724428A0A0B4J2F2 783 aa20.04■□□□□ 0.8
SDF2-202ENST00000585428 SIK1P57059 783 aa20.04■□□□□ 0.8
SDF2-202ENST00000585428 AK7Q96M32 723 aa20.04■□□□□ 0.8
SDF2-202ENST00000585428 SENP3-EIF4A1A0A087X0R7 540 aa20.03■□□□□ 0.8
SDF2-202ENST00000585428 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20.03■□□□□ 0.8
SDF2-202ENST00000585428 IFNL2Q8IZJ0 200 aa20.03■□□□□ 0.8
SDF2-202ENST00000585428 ASAP1Q9ULH1 1129 aa20.03■□□□□ 0.8
SDF2-202ENST00000585428 GIGYF1O75420 1035 aaPredicted RBP20.02■□□□□ 0.8
SDF2-202ENST00000585428 PHKG2P15735 406 aa20.02■□□□□ 0.8
SDF2-202ENST00000585428 LINC00116Q8NCU8 138 aa20.02■□□□□ 0.8
SDF2-202ENST00000585428 SSFA2P28290 1259 aa20.01■□□□□ 0.79
SDF2-202ENST00000585428 TMOD3Q9NYL9 352 aa20.01■□□□□ 0.79
SDF2-202ENST00000585428 KIF20BQ96Q89 1820 aa20■□□□□ 0.79
SDF2-202ENST00000585428 ITPK1Q13572 414 aa20■□□□□ 0.79
SDF2-202ENST00000585428 EIF4A2Q14240 407 aaKnown RBP20■□□□□ 0.79
SDF2-202ENST00000585428 ATG3Q9NT62 314 aa20■□□□□ 0.79
SDF2-202ENST00000585428 PHF14O94880 888 aa19.99■□□□□ 0.79
SDF2-202ENST00000585428 C5P01031 1676 aa19.99■□□□□ 0.79
SDF2-202ENST00000585428 ATP6V1AP38606 617 aa19.98■□□□□ 0.79
SDF2-202ENST00000585428 CLSPNQ9HAW4 1339 aa19.98■□□□□ 0.79
SDF2-202ENST00000585428 C4BP0C0L5 1744 aa19.97■□□□□ 0.79
SDF2-202ENST00000585428 PKD1L3Q7Z443 1732 aa19.97■□□□□ 0.79
SDF2-202ENST00000585428 TOGARAM1Q9Y4F4 1720 aa19.97■□□□□ 0.79
SDF2-202ENST00000585428 TNNT2P45379 298 aaPredicted RBP19.97■□□□□ 0.79
SDF2-202ENST00000585428 TAF1LQ8IZX4 1826 aa19.97■□□□□ 0.79
SDF2-202ENST00000585428 ITGB4P16144 1822 aa19.95■□□□□ 0.78
SDF2-202ENST00000585428 ERVV-2B6SEH9 535 aa19.95■□□□□ 0.78
SDF2-202ENST00000585428 PLEKHG2Q9H7P9 1386 aa19.95■□□□□ 0.78
SDF2-202ENST00000585428 GNPATO15228 680 aa19.94■□□□□ 0.78
SDF2-202ENST00000585428 SLC4A9Q96Q91 983 aa19.94■□□□□ 0.78
SDF2-202ENST00000585428 PANK3Q9H999 370 aa19.94■□□□□ 0.78
SDF2-202ENST00000585428 IGSF1Q8N6C5 1336 aa19.94■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms