RNA–Protein interactions for RNA: ENST00000583877.5

NUP85-223, Transcript of nucleoporin 85, human

TSL 3

Gene NUP85, Length 575 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NUP85-223	ENST00000583877	TAF1L	Q8IZX4	1826 aa		12.46	□□□□□ -0.41
NUP85-223	ENST00000583877	SLC27A3	Q5K4L6	730 aa		12.46	□□□□□ -0.41
NUP85-223	ENST00000583877	NME9	Q86XW9	330 aa		12.46	□□□□□ -0.41
NUP85-223	ENST00000583877	SLC16A10	Q8TF71	515 aa		12.46	□□□□□ -0.41
NUP85-223	ENST00000583877	AKT1S1	Q96B36	256 aa		12.46	□□□□□ -0.41
NUP85-223	ENST00000583877	RNF39	Q9H2S5	420 aa		12.46	□□□□□ -0.41
NUP85-223	ENST00000583877	EDC4	Q6P2E9	1401 aa	Known RBP	12.45	□□□□□ -0.42
NUP85-223	ENST00000583877	SENP3-EIF4A1	A0A087X0R7	540 aa		12.45	□□□□□ -0.42
NUP85-223	ENST00000583877	GPR162	Q16538	588 aa		12.45	□□□□□ -0.42
NUP85-223	ENST00000583877	SPINK5	Q9NQ38	1064 aa	Predicted RBP	12.45	□□□□□ -0.42
NUP85-223	ENST00000583877	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	12.44	□□□□□ -0.42
NUP85-223	ENST00000583877	SIN3A	Q96ST3	1273 aa		12.44	□□□□□ -0.42
NUP85-223	ENST00000583877	C5	P01031	1676 aa		12.44	□□□□□ -0.42
NUP85-223	ENST00000583877	POLD1	P28340	1107 aa		12.43	□□□□□ -0.42
NUP85-223	ENST00000583877	PNPLA7	Q6ZV29	1317 aa		12.42	□□□□□ -0.42
NUP85-223	ENST00000583877	ITGB4	P16144	1822 aa		12.42	□□□□□ -0.42
NUP85-223	ENST00000583877	TMC1	Q8TDI8	760 aa		12.42	□□□□□ -0.42
NUP85-223	ENST00000583877	IP6K1	Q92551	441 aa		12.42	□□□□□ -0.42
NUP85-223	ENST00000583877	NEUROD1	Q13562	356 aa		12.41	□□□□□ -0.42
NUP85-223	ENST00000583877	DDX54	Q8TDD1	881 aa	Known RBP	12.41	□□□□□ -0.42
NUP85-223	ENST00000583877	SLC12A5	Q9H2X9	1139 aa		12.41	□□□□□ -0.42
NUP85-223	ENST00000583877	TERF2IP	Q9NYB0	399 aa		12.41	□□□□□ -0.42
NUP85-223	ENST00000583877	TFCP2L1	Q9NZI6	479 aa		12.41	□□□□□ -0.42
NUP85-223	ENST00000583877		A0A1W2PP64	1363 aa		12.41	□□□□□ -0.42
NUP85-223	ENST00000583877	ANKRD36B	Q8N2N9	1353 aa		12.41	□□□□□ -0.42
NUP85-223	ENST00000583877	GIGYF1	O75420	1035 aa	Predicted RBP	12.4	□□□□□ -0.42
NUP85-223	ENST00000583877	MKRN4P	Q13434	485 aa	Predicted RBP	12.4	□□□□□ -0.42
NUP85-223	ENST00000583877	KLHL34	Q8N239	644 aa		12.4	□□□□□ -0.42
NUP85-223	ENST00000583877	POTED	Q86YR6	584 aa		12.39	□□□□□ -0.43
NUP85-223	ENST00000583877	PUS7	Q96PZ0	661 aa	Known RBP	12.39	□□□□□ -0.43
NUP85-223	ENST00000583877	CARD11	Q9BXL7	1154 aa		12.39	□□□□□ -0.43
NUP85-223	ENST00000583877	NSD2	O96028	1365 aa		12.39	□□□□□ -0.43
NUP85-223	ENST00000583877	PRIM1	P49642	420 aa	Known RBP	12.38	□□□□□ -0.43
NUP85-223	ENST00000583877	PELP1	Q8IZL8	1130 aa	Known RBP	12.38	□□□□□ -0.43
NUP85-223	ENST00000583877	SYTL4	Q96C24	671 aa	Predicted RBP	12.38	□□□□□ -0.43
NUP85-223	ENST00000583877	LTV1	Q96GA3	475 aa	Predicted RBP	12.38	□□□□□ -0.43
NUP85-223	ENST00000583877	KIF20B	Q96Q89	1820 aa		12.38	□□□□□ -0.43
NUP85-223	ENST00000583877	UBR3	Q6ZT12	1888 aa		12.38	□□□□□ -0.43
NUP85-223	ENST00000583877	SPDYE4	A6NLX3	237 aa		12.37	□□□□□ -0.43
NUP85-223	ENST00000583877	CAPN15	O75808	1086 aa		12.37	□□□□□ -0.43
NUP85-223	ENST00000583877	KCNQ4	P56696	695 aa		12.37	□□□□□ -0.43
NUP85-223	ENST00000583877	NLGN2	Q8NFZ4	835 aa		12.37	□□□□□ -0.43
NUP85-223	ENST00000583877	MEGF6	O75095	1541 aa		12.37	□□□□□ -0.43
NUP85-223	ENST00000583877	GRIN3B	O60391	1043 aa		12.36	□□□□□ -0.43
NUP85-223	ENST00000583877	HOXC9	P31274	260 aa		12.36	□□□□□ -0.43
NUP85-223	ENST00000583877	POLA2	Q14181	598 aa		12.36	□□□□□ -0.43
NUP85-223	ENST00000583877	ZCRB1	Q8TBF4	217 aa	Known RBP	12.36	□□□□□ -0.43
NUP85-223	ENST00000583877	MAP3K19	Q56UN5	1328 aa		12.36	□□□□□ -0.43
NUP85-223	ENST00000583877	C1QBP	Q07021	282 aa	Known RBP	12.35	□□□□□ -0.43
NUP85-223	ENST00000583877	COG3	Q96JB2	828 aa		12.35	□□□□□ -0.43
NUP85-223	ENST00000583877	CCNL1	Q9UK58	526 aa	Predicted RBP	12.35	□□□□□ -0.43
NUP85-223	ENST00000583877	TOGARAM1	Q9Y4F4	1720 aa		12.34	□□□□□ -0.43
NUP85-223	ENST00000583877	RTL1	A6NKG5	1358 aa		12.34	□□□□□ -0.43
NUP85-223	ENST00000583877	USP47	Q96K76	1375 aa		12.34	□□□□□ -0.43
NUP85-223	ENST00000583877	YBX3	P16989	372 aa	Known RBP eCLIP	12.34	□□□□□ -0.43
NUP85-223	ENST00000583877	AMPH	P49418	695 aa		12.34	□□□□□ -0.43
NUP85-223	ENST00000583877	CGNL1	Q0VF96	1302 aa		12.34	□□□□□ -0.43
NUP85-223	ENST00000583877	C4B	P0C0L5	1744 aa		12.34	□□□□□ -0.43
NUP85-223	ENST00000583877	PKD1L3	Q7Z443	1732 aa		12.34	□□□□□ -0.43
NUP85-223	ENST00000583877	HMGB2	P26583	209 aa	Known RBP	12.33	□□□□□ -0.44
NUP85-223	ENST00000583877	COL23A1	Q86Y22	540 aa	Predicted RBP	12.33	□□□□□ -0.44
NUP85-223	ENST00000583877	MAP2	P11137	1827 aa	Known RBP	12.32	□□□□□ -0.44
NUP85-223	ENST00000583877	SMG6	Q86US8	1419 aa	Known RBP	12.31	□□□□□ -0.44
NUP85-223	ENST00000583877	SLC24A1	O60721	1099 aa		12.31	□□□□□ -0.44
NUP85-223	ENST00000583877	FBLN1	P23142	703 aa		12.31	□□□□□ -0.44
NUP85-223	ENST00000583877	IFFO2	Q5TF58	517 aa		12.31	□□□□□ -0.44
NUP85-223	ENST00000583877	CD2AP	Q9Y5K6	639 aa		12.31	□□□□□ -0.44
NUP85-223	ENST00000583877	KIF13B	Q9NQT8	1826 aa		12.3	□□□□□ -0.44
NUP85-223	ENST00000583877	ATP10D	Q9P241	1426 aa		12.3	□□□□□ -0.44
NUP85-223	ENST00000583877	NBPF6	Q5VWK0	638 aa		12.3	□□□□□ -0.44
NUP85-223	ENST00000583877	FLAD1	Q8NFF5	587 aa		12.3	□□□□□ -0.44
NUP85-223	ENST00000583877	NBPF4	Q96M43	638 aa		12.3	□□□□□ -0.44
NUP85-223	ENST00000583877	TESK2	Q96S53	571 aa		12.3	□□□□□ -0.44
NUP85-223	ENST00000583877	ANKRD26	Q9UPS8	1709 aa		12.29	□□□□□ -0.44
NUP85-223	ENST00000583877	MSL1	Q68DK7	614 aa		12.29	□□□□□ -0.44
NUP85-223	ENST00000583877	RAPGEF4	Q8WZA2	1011 aa		12.29	□□□□□ -0.44
NUP85-223	ENST00000583877	TONSL	Q96HA7	1378 aa		12.29	□□□□□ -0.44
NUP85-223	ENST00000583877	TAT	P17735	454 aa	Predicted RBP	12.28	□□□□□ -0.44
NUP85-223	ENST00000583877	RRS1	Q15050	365 aa	Known RBP	12.28	□□□□□ -0.44
NUP85-223	ENST00000583877	USHBP1	Q8N6Y0	703 aa		12.28	□□□□□ -0.44
NUP85-223	ENST00000583877	PCDH11X	Q9BZA7	1347 aa		12.28	□□□□□ -0.44
NUP85-223	ENST00000583877	PCDH11Y	Q9BZA8	1340 aa		12.28	□□□□□ -0.44
NUP85-223	ENST00000583877	ADCY9	O60503	1353 aa		12.28	□□□□□ -0.44
NUP85-223	ENST00000583877	PALLD	Q8WX93	1383 aa		12.28	□□□□□ -0.44
NUP85-223	ENST00000583877	ST20-MTHFS	A0A0A6YYL1	179 aa		12.27	□□□□□ -0.45
NUP85-223	ENST00000583877	FYB1	O15117	783 aa		12.27	□□□□□ -0.45
NUP85-223	ENST00000583877	FBXO3	Q9UK99	471 aa		12.27	□□□□□ -0.45
NUP85-223	ENST00000583877	INSR	P06213	1382 aa		12.27	□□□□□ -0.45
NUP85-223	ENST00000583877	N4BP2	Q86UW6	1770 aa	Predicted RBP	12.26	□□□□□ -0.45
NUP85-223	ENST00000583877	BRCA1	P38398	1863 aa	Known RBP	12.26	□□□□□ -0.45
NUP85-223	ENST00000583877	GPBP1L1	Q9HC44	474 aa	Predicted RBP	12.26	□□□□□ -0.45
NUP85-223	ENST00000583877	KIF24	Q5T7B8	1368 aa		12.26	□□□□□ -0.45
NUP85-223	ENST00000583877	NSD3	Q9BZ95	1437 aa		12.26	□□□□□ -0.45
NUP85-223	ENST00000583877	KIAA1551	Q9HCM1	1747 aa		12.25	□□□□□ -0.45
NUP85-223	ENST00000583877	MPRIP	Q6WCQ1	1025 aa		12.25	□□□□□ -0.45
NUP85-223	ENST00000583877	SMARCC1	Q92922	1105 aa	Predicted RBP	12.25	□□□□□ -0.45
NUP85-223	ENST00000583877	GGNBP2	Q9H3C7	697 aa		12.25	□□□□□ -0.45
NUP85-223	ENST00000583877	FLT4	P35916	1363 aa		12.25	□□□□□ -0.45
NUP85-223	ENST00000583877	AK7	Q96M32	723 aa		12.24	□□□□□ -0.45
NUP85-223	ENST00000583877	CIC	Q96RK0	1608 aa	Predicted RBP	12.24	□□□□□ -0.45

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