RNA–Protein interactions for RNA: ENST00000583577.1

MKS1-212, Transcript of Meckel syndrome, type 1, humanhuman

TSL 2

Gene MKS1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1-212ENST00000583577 ROCK2O75116 1388 aaKnown RBP13.59□□□□□ -0.23
MKS1-212ENST00000583577 PPIP5K1Q6PFW1 1433 aa13.59□□□□□ -0.23
MKS1-212ENST00000583577 SOX12O15370 315 aa13.59□□□□□ -0.23
MKS1-212ENST00000583577 CCDC7Q96M83 1385 aa13.58□□□□□ -0.23
MKS1-212ENST00000583577 CPSF1Q10570 1443 aaKnown RBP13.58□□□□□ -0.24
MKS1-212ENST00000583577 COL23A1Q86Y22 540 aaPredicted RBP13.58□□□□□ -0.24
MKS1-212ENST00000583577 NMRK2Q9NPI5 230 aa13.58□□□□□ -0.24
MKS1-212ENST00000583577 PCDH10Q9P2E7 1040 aa13.58□□□□□ -0.24
MKS1-212ENST00000583577 IGSF1Q8N6C5 1336 aa13.58□□□□□ -0.24
MKS1-212ENST00000583577 LY75O60449 1722 aa13.57□□□□□ -0.24
MKS1-212ENST00000583577 QRICH2Q9H0J4 1663 aa13.56□□□□□ -0.24
MKS1-212ENST00000583577 HSPA1AP0DMV8 641 aaKnown RBP13.56□□□□□ -0.24
MKS1-212ENST00000583577 HSPA1BP0DMV9 641 aaKnown RBP13.56□□□□□ -0.24
MKS1-212ENST00000583577 C16orf71Q8IYS4 520 aaPredicted RBP13.56□□□□□ -0.24
MKS1-212ENST00000583577 RBM46Q8TBY0 533 aaKnown RBP13.56□□□□□ -0.24
MKS1-212ENST00000583577 ARHGEF25Q86VW2 580 aa13.55□□□□□ -0.24
MKS1-212ENST00000583577 SYTL4Q96C24 671 aaPredicted RBP13.55□□□□□ -0.24
MKS1-212ENST00000583577 CARD11Q9BXL7 1154 aa13.54□□□□□ -0.24
MKS1-212ENST00000583577 IL2RBP14784 551 aa13.53□□□□□ -0.24
MKS1-212ENST00000583577 SRPK2P78362 688 aaKnown RBP13.53□□□□□ -0.24
MKS1-212ENST00000583577 NLRP2Q9NX02 1062 aa13.53□□□□□ -0.24
MKS1-212ENST00000583577 CCNL1Q9UK58 526 aaPredicted RBP13.52□□□□□ -0.25
MKS1-212ENST00000583577 CENPJQ9HC77 1338 aaPredicted RBP13.52□□□□□ -0.25
MKS1-212ENST00000583577 DOT1LQ8TEK3 1739 aa13.51□□□□□ -0.25
MKS1-212ENST00000583577 FSTL1Q12841 308 aa13.51□□□□□ -0.25
MKS1-212ENST00000583577 DDX54Q8TDD1 881 aaKnown RBP13.51□□□□□ -0.25
MKS1-212ENST00000583577 SUPT16HQ9Y5B9 1047 aaKnown RBP13.51□□□□□ -0.25
MKS1-212ENST00000583577 CICQ96RK0 1608 aaPredicted RBP13.5□□□□□ -0.25
MKS1-212ENST00000583577 PRIM1P49642 420 aaKnown RBP13.5□□□□□ -0.25
MKS1-212ENST00000583577 KCNH5Q8NCM2 988 aa13.5□□□□□ -0.25
MKS1-212ENST00000583577 CABP2Q9NPB3 220 aa13.5□□□□□ -0.25
MKS1-212ENST00000583577 ANP32CO43423 234 aa13.49□□□□□ -0.25
MKS1-212ENST00000583577 N4BP2Q86UW6 1770 aaPredicted RBP13.49□□□□□ -0.25
MKS1-212ENST00000583577 C5P01031 1676 aa13.49□□□□□ -0.25
MKS1-212ENST00000583577 TAF1LQ8IZX4 1826 aa13.48□□□□□ -0.25
MKS1-212ENST00000583577 CABP1Q9NZU7 370 aa13.48□□□□□ -0.25
MKS1-212ENST00000583577 LTN1O94822 1766 aa13.47□□□□□ -0.25
MKS1-212ENST00000583577 USP54Q70EL1 1684 aa13.47□□□□□ -0.25
MKS1-212ENST00000583577 ARHGAP27Q6ZUM4 889 aa13.46□□□□□ -0.25
MKS1-212ENST00000583577 NFAT5O94916 1531 aa13.45□□□□□ -0.26
MKS1-212ENST00000583577 FAM161AQ3B820 660 aa13.45□□□□□ -0.26
MKS1-212ENST00000583577 FLAD1Q8NFF5 587 aa13.45□□□□□ -0.26
MKS1-212ENST00000583577 PKD1L3Q7Z443 1732 aa13.44□□□□□ -0.26
MKS1-212ENST00000583577 ERBB3P21860 1342 aa13.44□□□□□ -0.26
MKS1-212ENST00000583577 BCS1LQ9Y276 419 aa13.44□□□□□ -0.26
MKS1-212ENST00000583577 NSD2O96028 1365 aa13.44□□□□□ -0.26
MKS1-212ENST00000583577 ANKRD36BQ8N2N9 1353 aa13.44□□□□□ -0.26
MKS1-212ENST00000583577 PDE4DIPQ5VU43 2346 aa13.44□□□□□ -0.26
MKS1-212ENST00000583577 EVC2Q86UK5 1308 aa13.43□□□□□ -0.26
MKS1-212ENST00000583577 RRAGCQ9HB90 399 aa13.43□□□□□ -0.26
MKS1-212ENST00000583577 KCPQ6ZWJ8 1503 aa13.43□□□□□ -0.26
MKS1-212ENST00000583577 USP47Q96K76 1375 aa13.43□□□□□ -0.26
MKS1-212ENST00000583577 SBNO2Q9Y2G9 1366 aa13.43□□□□□ -0.26
MKS1-212ENST00000583577 TTC21BQ7Z4L5 1316 aa13.42□□□□□ -0.26
MKS1-212ENST00000583577 UBR3Q6ZT12 1888 aa13.42□□□□□ -0.26
MKS1-212ENST00000583577 C9orf131Q5VYM1 1079 aa13.42□□□□□ -0.26
MKS1-212ENST00000583577 SMIM5Q71RC9 77 aa13.42□□□□□ -0.26
MKS1-212ENST00000583577 SMC1BQ8NDV3 1235 aa13.42□□□□□ -0.26
MKS1-212ENST00000583577 ANKRD24Q8TF21 1146 aa13.42□□□□□ -0.26
MKS1-212ENST00000583577 TNRC6CQ9HCJ0 1690 aaKnown RBP13.42□□□□□ -0.26
MKS1-212ENST00000583577 ST20-MTHFSA0A0A6YYL1 179 aa13.41□□□□□ -0.26
MKS1-212ENST00000583577 SLC24A1O60721 1099 aa13.41□□□□□ -0.26
MKS1-212ENST00000583577 PHF14O94880 888 aa13.41□□□□□ -0.26
MKS1-212ENST00000583577 KIAA1551Q9HCM1 1747 aa13.41□□□□□ -0.26
MKS1-212ENST00000583577 KIF13BQ9NQT8 1826 aa13.41□□□□□ -0.26
MKS1-212ENST00000583577 KDM2BQ8NHM5 1336 aa13.4□□□□□ -0.26
MKS1-212ENST00000583577 NEFLP07196 543 aa13.4□□□□□ -0.26
MKS1-212ENST00000583577 DDX10Q13206 875 aaKnown RBP13.4□□□□□ -0.26
MKS1-212ENST00000583577 ERICH6BQ5W0A0 696 aa13.4□□□□□ -0.26
MKS1-212ENST00000583577 SBF1O95248 1867 aa13.4□□□□□ -0.26
MKS1-212ENST00000583577 C4BP0C0L5 1744 aa13.39□□□□□ -0.27
MKS1-212ENST00000583577 TOGARAM1Q9Y4F4 1720 aa13.39□□□□□ -0.27
MKS1-212ENST00000583577 A0A0G2JLW4 131 aa13.39□□□□□ -0.27
MKS1-212ENST00000583577 AK7Q96M32 723 aa13.39□□□□□ -0.27
MKS1-212ENST00000583577 PLEKHG2Q9H7P9 1386 aa13.39□□□□□ -0.27
MKS1-212ENST00000583577 PXDNLA1KZ92 1463 aa13.39□□□□□ -0.27
MKS1-212ENST00000583577 BRCA1P38398 1863 aaKnown RBP13.39□□□□□ -0.27
MKS1-212ENST00000583577 ARFGEF1Q9Y6D6 1849 aa13.39□□□□□ -0.27
MKS1-212ENST00000583577 FCHSD2O94868 740 aa13.38□□□□□ -0.27
MKS1-212ENST00000583577 AMIGO3Q86WK7 504 aa13.38□□□□□ -0.27
MKS1-212ENST00000583577 EIF4G2P78344 907 aaKnown RBP eCLIP13.37□□□□□ -0.27
MKS1-212ENST00000583577 RGPD2P0DJD1 1756 aa13.37□□□□□ -0.27
MKS1-212ENST00000583577 TTC21AQ8NDW8 1320 aa13.37□□□□□ -0.27
MKS1-212ENST00000583577 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.36□□□□□ -0.27
MKS1-212ENST00000583577 FOXN1O15353 648 aa13.36□□□□□ -0.27
MKS1-212ENST00000583577 LTV1Q96GA3 475 aaPredicted RBP13.36□□□□□ -0.27
MKS1-212ENST00000583577 RNF181Q9P0P0 153 aa13.36□□□□□ -0.27
MKS1-212ENST00000583577 C10orf71Q711Q0 1435 aa13.36□□□□□ -0.27
MKS1-212ENST00000583577 TMF1P82094 1093 aa13.35□□□□□ -0.27
MKS1-212ENST00000583577 TESK2Q96S53 571 aa13.35□□□□□ -0.27
MKS1-212ENST00000583577 ZNF692Q9BU19 519 aaPredicted RBP13.35□□□□□ -0.27
MKS1-212ENST00000583577 TNRC18O15417 2968 aaPredicted RBP13.35□□□□□ -0.27
MKS1-212ENST00000583577 FAM208AQ9UK61 1670 aaKnown RBP13.34□□□□□ -0.27
MKS1-212ENST00000583577 ZCRB1Q8TBF4 217 aaKnown RBP13.34□□□□□ -0.27
MKS1-212ENST00000583577 PRDM10Q9NQV6 1147 aa13.34□□□□□ -0.27
MKS1-212ENST00000583577 CCDC88AQ3V6T2 1871 aa13.33□□□□□ -0.27
MKS1-212ENST00000583577 MMP10P09238 476 aa13.33□□□□□ -0.28
MKS1-212ENST00000583577 HSPA5P11021 654 aaKnown RBP13.33□□□□□ -0.28
MKS1-212ENST00000583577 DPEP1P16444 411 aa13.33□□□□□ -0.28
MKS1-212ENST00000583577 HMGB2P26583 209 aaKnown RBP13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms