RNA–Protein interactions for RNA: ENST00000582981.5

TOP3A-214, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 2

Gene TOP3A, Length 3,239 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-214ENST00000582981 MAPK8IP2Q13387 824 aaPredicted RBP12.89□□□□□ -0.35
TOP3A-214ENST00000582981 NOL7Q9UMY1 257 aaKnown RBP12.89□□□□□ -0.35
TOP3A-214ENST00000582981 NEXMIFQ5QGS0 1516 aa12.89□□□□□ -0.35
TOP3A-214ENST00000582981 FOXO3O43524 673 aa12.88□□□□□ -0.35
TOP3A-214ENST00000582981 BAG4O95429 457 aaKnown RBP12.88□□□□□ -0.35
TOP3A-214ENST00000582981 ARAP3Q8WWN8 1544 aa12.88□□□□□ -0.35
TOP3A-214ENST00000582981 PTMAP06454 111 aaKnown RBP12.88□□□□□ -0.35
TOP3A-214ENST00000582981 SNX21Q969T3 373 aa12.88□□□□□ -0.35
TOP3A-214ENST00000582981 GCC1Q96CN9 775 aa12.88□□□□□ -0.35
TOP3A-214ENST00000582981 ZNF428Q96B54 188 aa12.88□□□□□ -0.35
TOP3A-214ENST00000582981 IL13P35225 146 aa12.87□□□□□ -0.35
TOP3A-214ENST00000582981 SASS6Q6UVJ0 657 aa12.87□□□□□ -0.35
TOP3A-214ENST00000582981 CSPP1Q1MSJ5 1256 aa12.87□□□□□ -0.35
TOP3A-214ENST00000582981 PLCD3Q8N3E9 789 aa12.87□□□□□ -0.35
TOP3A-214ENST00000582981 EXOC6BQ9Y2D4 811 aa12.87□□□□□ -0.35
TOP3A-214ENST00000582981 PRPF40AO75400 957 aaKnown RBP12.86□□□□□ -0.35
TOP3A-214ENST00000582981 SDSP20132 328 aa12.86□□□□□ -0.35
TOP3A-214ENST00000582981 RNF214Q8ND24 703 aa12.86□□□□□ -0.35
TOP3A-214ENST00000582981 PTPRMP28827 1452 aa12.86□□□□□ -0.35
TOP3A-214ENST00000582981 ZNF500O60304 480 aaPredicted RBP12.86□□□□□ -0.35
TOP3A-214ENST00000582981 G2E3Q7L622 706 aa12.86□□□□□ -0.35
TOP3A-214ENST00000582981 SPDYE4A6NLX3 237 aa12.86□□□□□ -0.35
TOP3A-214ENST00000582981 UTP14CQ5TAP6 766 aaKnown RBP12.86□□□□□ -0.35
TOP3A-214ENST00000582981 COG3Q96JB2 828 aa12.86□□□□□ -0.35
TOP3A-214ENST00000582981 RBSNQ9H1K0 784 aa12.86□□□□□ -0.35
TOP3A-214ENST00000582981 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.86□□□□□ -0.35
TOP3A-214ENST00000582981 ZKSCAN5Q9Y2L8 839 aa12.86□□□□□ -0.35
TOP3A-214ENST00000582981 FAM135BQ49AJ0 1406 aa12.85□□□□□ -0.35
TOP3A-214ENST00000582981 MYO5BQ9ULV0 1848 aa12.85□□□□□ -0.35
TOP3A-214ENST00000582981 NCOA3Q9Y6Q9 1424 aa12.85□□□□□ -0.35
TOP3A-214ENST00000582981 ZMYM3Q14202 1370 aa12.85□□□□□ -0.35
TOP3A-214ENST00000582981 IFT57Q9NWB7 429 aa12.85□□□□□ -0.35
TOP3A-214ENST00000582981 NSFL1CQ9UNZ2 370 aaKnown RBP12.85□□□□□ -0.35
TOP3A-214ENST00000582981 LMTK2Q8IWU2 1503 aa12.85□□□□□ -0.35
TOP3A-214ENST00000582981 ABCC4O15439 1325 aa12.85□□□□□ -0.35
TOP3A-214ENST00000582981 HSP90AB2PQ58FF8 381 aa12.84□□□□□ -0.35
TOP3A-214ENST00000582981 TTC22Q5TAA0 569 aa12.84□□□□□ -0.35
TOP3A-214ENST00000582981 LARP6Q9BRS8 491 aaKnown RBP12.84□□□□□ -0.35
TOP3A-214ENST00000582981 SLC52A1Q9NWF4 448 aa12.84□□□□□ -0.35
TOP3A-214ENST00000582981 MSH6P52701 1360 aa12.84□□□□□ -0.35
TOP3A-214ENST00000582981 PTMSP20962 102 aa12.84□□□□□ -0.35
TOP3A-214ENST00000582981 CFAP44Q96MT7 982 aa12.84□□□□□ -0.35
TOP3A-214ENST00000582981 SLC4A2P04920 1241 aa12.84□□□□□ -0.35
TOP3A-214ENST00000582981 PRIM1P49642 420 aaKnown RBP12.84□□□□□ -0.35
TOP3A-214ENST00000582981 GDPD2Q9HCC8 539 aa12.84□□□□□ -0.35
TOP3A-214ENST00000582981 KLHL40Q2TBA0 621 aa12.83□□□□□ -0.36
TOP3A-214ENST00000582981 NUDT16Q96DE0 195 aaKnown RBP12.83□□□□□ -0.36
TOP3A-214ENST00000582981 PNPLA6Q8IY17 1366 aa12.83□□□□□ -0.36
TOP3A-214ENST00000582981 HECW2Q9P2P5 1572 aa12.83□□□□□ -0.36
TOP3A-214ENST00000582981 ZSCAN23Q3MJ62 389 aa12.83□□□□□ -0.36
TOP3A-214ENST00000582981 API5Q9BZZ5 524 aaKnown RBP12.83□□□□□ -0.36
TOP3A-214ENST00000582981 CIZ1Q9ULV3 898 aaPredicted RBP12.83□□□□□ -0.36
TOP3A-214ENST00000582981 PIK3C2BO00750 1634 aa12.83□□□□□ -0.36
TOP3A-214ENST00000582981 ZBTB22O15209 634 aa12.83□□□□□ -0.36
TOP3A-214ENST00000582981 MAP4K4O95819 1239 aaPredicted RBP12.83□□□□□ -0.36
TOP3A-214ENST00000582981 NUTM2GQ5VZR2 741 aa12.83□□□□□ -0.36
TOP3A-214ENST00000582981 CEP85Q6P2H3 762 aa12.83□□□□□ -0.36
TOP3A-214ENST00000582981 CGNQ9P2M7 1197 aaKnown RBP12.83□□□□□ -0.36
TOP3A-214ENST00000582981 CDK11BP21127 795 aaKnown RBP12.82□□□□□ -0.36
TOP3A-214ENST00000582981 USP26Q9BXU7 913 aa12.82□□□□□ -0.36
TOP3A-214ENST00000582981 ZNF853P0CG23 659 aa12.82□□□□□ -0.36
TOP3A-214ENST00000582981 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.82□□□□□ -0.36
TOP3A-214ENST00000582981 RILPL2Q969X0 211 aa12.82□□□□□ -0.36
TOP3A-214ENST00000582981 UPF3BQ9BZI7 483 aaKnown RBP12.82□□□□□ -0.36
TOP3A-214ENST00000582981 EIF4A2Q14240 407 aaKnown RBP12.81□□□□□ -0.36
TOP3A-214ENST00000582981 AEBP2Q6ZN18 517 aaPredicted RBP12.81□□□□□ -0.36
TOP3A-214ENST00000582981 DCTPP1Q9H773 170 aa12.81□□□□□ -0.36
TOP3A-214ENST00000582981 NEURL4Q96JN8 1562 aa12.81□□□□□ -0.36
TOP3A-214ENST00000582981 USP32Q8NFA0 1604 aa12.81□□□□□ -0.36
TOP3A-214ENST00000582981 PUS7Q96PZ0 661 aaKnown RBP12.81□□□□□ -0.36
TOP3A-214ENST00000582981 RIMS2Q9UQ26 1411 aa12.81□□□□□ -0.36
TOP3A-214ENST00000582981 NEK4P51957 841 aa12.81□□□□□ -0.36
TOP3A-214ENST00000582981 HS1BP3Q53T59 392 aa12.81□□□□□ -0.36
TOP3A-214ENST00000582981 CFAP74Q9C0B2 1584 aa12.8□□□□□ -0.36
TOP3A-214ENST00000582981 MLH3Q9UHC1 1453 aa12.8□□□□□ -0.36
TOP3A-214ENST00000582981 SYCE3A1L190 88 aa12.8□□□□□ -0.36
TOP3A-214ENST00000582981 WASLO00401 505 aaPredicted RBP12.8□□□□□ -0.36
TOP3A-214ENST00000582981 ATP2B3Q16720 1220 aa12.8□□□□□ -0.36
TOP3A-214ENST00000582981 TRIM6-TRIM34B2RNG4 842 aa12.8□□□□□ -0.36
TOP3A-214ENST00000582981 PALD1Q9ULE6 856 aa12.8□□□□□ -0.36
TOP3A-214ENST00000582981 MED14O60244 1454 aa12.79□□□□□ -0.36
TOP3A-214ENST00000582981 PTCH1Q13635 1447 aa12.79□□□□□ -0.36
TOP3A-214ENST00000582981 KIF20AO95235 890 aa12.79□□□□□ -0.36
TOP3A-214ENST00000582981 LTV1Q96GA3 475 aaPredicted RBP12.79□□□□□ -0.36
TOP3A-214ENST00000582981 MAP2P11137 1827 aaKnown RBP12.79□□□□□ -0.36
TOP3A-214ENST00000582981 INTS3Q68E01 1043 aaKnown RBP12.79□□□□□ -0.36
TOP3A-214ENST00000582981 GPT2Q8TD30 523 aa12.79□□□□□ -0.36
TOP3A-214ENST00000582981 GTPBP4Q9BZE4 634 aaKnown RBP12.79□□□□□ -0.36
TOP3A-214ENST00000582981 IL1RAPL2Q9NP60 686 aa12.79□□□□□ -0.36
TOP3A-214ENST00000582981 LMBRD1Q9NUN5 540 aa12.79□□□□□ -0.36
TOP3A-214ENST00000582981 CCDC39Q9UFE4 941 aa12.79□□□□□ -0.36
TOP3A-214ENST00000582981 ZDHHC9Q9Y397 364 aa12.79□□□□□ -0.36
TOP3A-214ENST00000582981 RABEP1Q15276 862 aa12.79□□□□□ -0.36
TOP3A-214ENST00000582981 ANKRD44Q8N8A2 993 aa12.79□□□□□ -0.36
TOP3A-214ENST00000582981 ARHGAP45Q92619 1136 aa12.79□□□□□ -0.36
TOP3A-214ENST00000582981 METP08581 1390 aa12.78□□□□□ -0.36
TOP3A-214ENST00000582981 ARHGEF40Q8TER5 1519 aa12.78□□□□□ -0.36
TOP3A-214ENST00000582981 KIAA2012Q0VF49 1180 aa12.78□□□□□ -0.36
TOP3A-214ENST00000582981 ZNF771Q7L3S4 317 aaPredicted RBP12.78□□□□□ -0.36
TOP3A-214ENST00000582981 ZNF830Q96NB3 372 aaPredicted RBP12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms