RNA–Protein interactions for RNA: ENST00000581570.5

SS18-219, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-219ENST00000581570 COL24A1Q17RW2 1714 aa18.12■□□□□ 0.49
SS18-219ENST00000581570 NEUROD1Q13562 356 aa18.12■□□□□ 0.49
SS18-219ENST00000581570 ZCRB1Q8TBF4 217 aaKnown RBP18.12■□□□□ 0.49
SS18-219ENST00000581570 TERF2IPQ9NYB0 399 aa18.12■□□□□ 0.49
SS18-219ENST00000581570 EDC4Q6P2E9 1401 aaKnown RBP18.12■□□□□ 0.49
SS18-219ENST00000581570 USP54Q70EL1 1684 aa18.12■□□□□ 0.49
SS18-219ENST00000581570 MSL1Q68DK7 614 aa18.11■□□□□ 0.49
SS18-219ENST00000581570 NSD2O96028 1365 aa18.11■□□□□ 0.49
SS18-219ENST00000581570 ATP10DQ9P241 1426 aa18.11■□□□□ 0.49
SS18-219ENST00000581570 LTN1O94822 1766 aa18.11■□□□□ 0.49
SS18-219ENST00000581570 GPBP1L1Q9HC44 474 aaPredicted RBP18.1■□□□□ 0.49
SS18-219ENST00000581570 GOLGB1Q14789 3259 aaKnown RBP18.09■□□□□ 0.49
SS18-219ENST00000581570 CD2APQ9Y5K6 639 aa18.09■□□□□ 0.49
SS18-219ENST00000581570 USP47Q96K76 1375 aa18.08■□□□□ 0.49
SS18-219ENST00000581570 AMPHP49418 695 aa18.08■□□□□ 0.48
SS18-219ENST00000581570 A0A1W2PP64 1363 aa18.07■□□□□ 0.48
SS18-219ENST00000581570 MAP3K19Q56UN5 1328 aa18.07■□□□□ 0.48
SS18-219ENST00000581570 HOXC9P31274 260 aa18.07■□□□□ 0.48
SS18-219ENST00000581570 CARD11Q9BXL7 1154 aa18.07■□□□□ 0.48
SS18-219ENST00000581570 HSPA6P17066 643 aa18.06■□□□□ 0.48
SS18-219ENST00000581570 COG3Q96JB2 828 aa18.06■□□□□ 0.48
SS18-219ENST00000581570 TUBGCP6Q96RT7 1819 aa18.06■□□□□ 0.48
SS18-219ENST00000581570 CEP350Q5VT06 3117 aa18.06■□□□□ 0.48
SS18-219ENST00000581570 FBLN1P23142 703 aa18.05■□□□□ 0.48
SS18-219ENST00000581570 FLAD1Q8NFF5 587 aa18.05■□□□□ 0.48
SS18-219ENST00000581570 ZNF526Q8TF50 670 aaPredicted RBP18.05■□□□□ 0.48
SS18-219ENST00000581570 LY75O60449 1722 aa18.04■□□□□ 0.48
SS18-219ENST00000581570 HMGB2P26583 209 aaKnown RBP18.04■□□□□ 0.48
SS18-219ENST00000581570 PUS7Q96PZ0 661 aaKnown RBP18.04■□□□□ 0.48
SS18-219ENST00000581570 MEGF6O75095 1541 aa18.03■□□□□ 0.48
SS18-219ENST00000581570 DOT1LQ8TEK3 1739 aa18.03■□□□□ 0.48
SS18-219ENST00000581570 NBPF6Q5VWK0 638 aa18.02■□□□□ 0.48
SS18-219ENST00000581570 NBPF4Q96M43 638 aa18.02■□□□□ 0.48
SS18-219ENST00000581570 FAM208AQ9UK61 1670 aaKnown RBP18.02■□□□□ 0.47
SS18-219ENST00000581570 CGNL1Q0VF96 1302 aa18.01■□□□□ 0.47
SS18-219ENST00000581570 RAPGEF4Q8WZA2 1011 aa18.01■□□□□ 0.47
SS18-219ENST00000581570 ADCY9O60503 1353 aa18.01■□□□□ 0.47
SS18-219ENST00000581570 USHBP1Q8N6Y0 703 aa18■□□□□ 0.47
SS18-219ENST00000581570 TATP17735 454 aaPredicted RBP17.99■□□□□ 0.47
SS18-219ENST00000581570 RRS1Q15050 365 aaKnown RBP17.98■□□□□ 0.47
SS18-219ENST00000581570 MPRIPQ6WCQ1 1025 aa17.98■□□□□ 0.47
SS18-219ENST00000581570 PPP4R3CPQ6ZMV5 832 aa17.98■□□□□ 0.47
SS18-219ENST00000581570 AK7Q96M32 723 aa17.98■□□□□ 0.47
SS18-219ENST00000581570 WWC3Q9ULE0 1092 aa17.98■□□□□ 0.47
SS18-219ENST00000581570 PALLDQ8WX93 1383 aa17.98■□□□□ 0.47
SS18-219ENST00000581570 IGSF1Q8N6C5 1336 aa17.98■□□□□ 0.47
SS18-219ENST00000581570 RTL1A6NKG5 1358 aa17.96■□□□□ 0.47
SS18-219ENST00000581570 SMARCC1Q92922 1105 aaPredicted RBP17.96■□□□□ 0.47
SS18-219ENST00000581570 PCDH11XQ9BZA7 1347 aa17.96■□□□□ 0.46
SS18-219ENST00000581570 PCDH11YQ9BZA8 1340 aa17.96■□□□□ 0.46
SS18-219ENST00000581570 PHF14O94880 888 aa17.95■□□□□ 0.46
SS18-219ENST00000581570 KIF3CO14782 793 aa17.94■□□□□ 0.46
SS18-219ENST00000581570 SMIM5Q71RC9 77 aa17.94■□□□□ 0.46
SS18-219ENST00000581570 AMIGO3Q86WK7 504 aa17.94■□□□□ 0.46
SS18-219ENST00000581570 SMG6Q86US8 1419 aaKnown RBP17.94■□□□□ 0.46
SS18-219ENST00000581570 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.93■□□□□ 0.46
SS18-219ENST00000581570 RGPD2P0DJD1 1756 aa17.93■□□□□ 0.46
SS18-219ENST00000581570 CYP27B1O15528 508 aa17.92■□□□□ 0.46
SS18-219ENST00000581570 TESK2Q96S53 571 aa17.92■□□□□ 0.46
SS18-219ENST00000581570 GGNBP2Q9H3C7 697 aa17.92■□□□□ 0.46
SS18-219ENST00000581570 C5P01031 1676 aa17.92■□□□□ 0.46
SS18-219ENST00000581570 FYB1O15117 783 aa17.91■□□□□ 0.46
SS18-219ENST00000581570 HSP90AB2PQ58FF8 381 aa17.91■□□□□ 0.46
SS18-219ENST00000581570 NSD3Q9BZ95 1437 aa17.9■□□□□ 0.46
SS18-219ENST00000581570 ST20-MTHFSA0A0A6YYL1 179 aa17.9■□□□□ 0.46
SS18-219ENST00000581570 SLC24A1O60721 1099 aa17.9■□□□□ 0.46
SS18-219ENST00000581570 SSFA2P28290 1259 aa17.9■□□□□ 0.46
SS18-219ENST00000581570 APLP1P51693 650 aa17.9■□□□□ 0.46
SS18-219ENST00000581570 PIGBQ92521 554 aa17.9■□□□□ 0.46
SS18-219ENST00000581570 INSRP06213 1382 aa17.9■□□□□ 0.46
SS18-219ENST00000581570 C4BP0C0L5 1744 aa17.88■□□□□ 0.45
SS18-219ENST00000581570 LOC102724428A0A0B4J2F2 783 aa17.87■□□□□ 0.45
SS18-219ENST00000581570 SIK1P57059 783 aa17.87■□□□□ 0.45
SS18-219ENST00000581570 LINC00116Q8NCU8 138 aa17.87■□□□□ 0.45
SS18-219ENST00000581570 TOMM70O94826 608 aa17.86■□□□□ 0.45
SS18-219ENST00000581570 NKX1-1Q15270 411 aaPredicted RBP17.86■□□□□ 0.45
SS18-219ENST00000581570 TAF1LQ8IZX4 1826 aa17.86■□□□□ 0.45
SS18-219ENST00000581570 FLT4P35916 1363 aa17.85■□□□□ 0.45
SS18-219ENST00000581570 DNAJC5GQ8N7S2 189 aa17.85■□□□□ 0.45
SS18-219ENST00000581570 TONSLQ96HA7 1378 aa17.84■□□□□ 0.45
SS18-219ENST00000581570 GNPATO15228 680 aa17.84■□□□□ 0.45
SS18-219ENST00000581570 MMP10P09238 476 aa17.84■□□□□ 0.45
SS18-219ENST00000581570 SPG7Q9UQ90 795 aa17.84■□□□□ 0.45
SS18-219ENST00000581570 KIF24Q5T7B8 1368 aa17.83■□□□□ 0.45
SS18-219ENST00000581570 ATP6V1AP38606 617 aa17.83■□□□□ 0.44
SS18-219ENST00000581570 TGFB2P61812 414 aa17.83■□□□□ 0.44
SS18-219ENST00000581570 ITPK1Q13572 414 aa17.83■□□□□ 0.44
SS18-219ENST00000581570 TMOD3Q9NYL9 352 aa17.83■□□□□ 0.44
SS18-219ENST00000581570 BCS1LQ9Y276 419 aa17.83■□□□□ 0.44
SS18-219ENST00000581570 TOGARAM1Q9Y4F4 1720 aa17.82■□□□□ 0.44
SS18-219ENST00000581570 ARHGAP27Q6ZUM4 889 aa17.82■□□□□ 0.44
SS18-219ENST00000581570 ASAP1Q9ULH1 1129 aa17.82■□□□□ 0.44
SS18-219ENST00000581570 A0A0G2JLW4 131 aa17.81■□□□□ 0.44
SS18-219ENST00000581570 UBR3Q6ZT12 1888 aa17.81■□□□□ 0.44
SS18-219ENST00000581570 TMF1P82094 1093 aa17.8■□□□□ 0.44
SS18-219ENST00000581570 MAPK8IP2Q13387 824 aaPredicted RBP17.8■□□□□ 0.44
SS18-219ENST00000581570 NMRK2Q9NPI5 230 aa17.8■□□□□ 0.44
SS18-219ENST00000581570 EMILIN1Q9Y6C2 1016 aa17.8■□□□□ 0.44
SS18-219ENST00000581570 PXDNLA1KZ92 1463 aa17.8■□□□□ 0.44
SS18-219ENST00000581570 TRAPPC3LQ5T215 181 aa17.79■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms