RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 USHBP1Q8N6Y0 703 aa13.68□□□□□ -0.22
SS18-217ENST00000580958 CABLES1Q8TDN4 633 aa13.68□□□□□ -0.22
SS18-217ENST00000580958 FANCIQ9NVI1 1328 aa13.67□□□□□ -0.22
SS18-217ENST00000580958 TSR2Q969E8 191 aaKnown RBP13.67□□□□□ -0.22
SS18-217ENST00000580958 THUMPD2Q9BTF0 503 aaKnown RBP13.67□□□□□ -0.22
SS18-217ENST00000580958 ABCC6O95255 1503 aa13.67□□□□□ -0.22
SS18-217ENST00000580958 LMO7Q8WWI1 1683 aa13.66□□□□□ -0.22
SS18-217ENST00000580958 PLIN1O60240 522 aa13.66□□□□□ -0.22
SS18-217ENST00000580958 NBPF6Q5VWK0 638 aa13.66□□□□□ -0.22
SS18-217ENST00000580958 ANKRD24Q8TF21 1146 aa13.66□□□□□ -0.22
SS18-217ENST00000580958 NBPF4Q96M43 638 aa13.66□□□□□ -0.22
SS18-217ENST00000580958 AHDC1Q5TGY3 1603 aaPredicted RBP13.65□□□□□ -0.22
SS18-217ENST00000580958 FAM83GA6ND36 823 aa13.65□□□□□ -0.22
SS18-217ENST00000580958 CALD1Q05682 793 aaKnown RBP13.65□□□□□ -0.22
SS18-217ENST00000580958 MTHFSDQ2M296 383 aaKnown RBP13.65□□□□□ -0.22
SS18-217ENST00000580958 LRRC59Q96AG4 307 aaKnown RBP13.65□□□□□ -0.22
SS18-217ENST00000580958 AXIN2Q9Y2T1 843 aa13.65□□□□□ -0.22
SS18-217ENST00000580958 LAS1LQ9Y4W2 734 aaKnown RBP13.65□□□□□ -0.22
SS18-217ENST00000580958 NCAPD2Q15021 1401 aa13.64□□□□□ -0.23
SS18-217ENST00000580958 LRRC37A3O60309 1634 aa13.64□□□□□ -0.23
SS18-217ENST00000580958 EXOSC9Q06265 439 aaKnown RBP13.64□□□□□ -0.23
SS18-217ENST00000580958 DCTN1Q14203 1278 aa13.64□□□□□ -0.23
SS18-217ENST00000580958 PIP4P2Q8N4L2 257 aa13.64□□□□□ -0.23
SS18-217ENST00000580958 PPP4R2Q9NY27 417 aa13.64□□□□□ -0.23
SS18-217ENST00000580958 PHLPP1O60346 1717 aa13.64□□□□□ -0.23
SS18-217ENST00000580958 KIAA0232Q92628 1395 aa13.63□□□□□ -0.23
SS18-217ENST00000580958 BCAR3O75815 825 aa13.63□□□□□ -0.23
SS18-217ENST00000580958 GNAI1P63096 354 aa13.63□□□□□ -0.23
SS18-217ENST00000580958 GAS2L2Q8NHY3 880 aa13.63□□□□□ -0.23
SS18-217ENST00000580958 IFT57Q9NWB7 429 aa13.63□□□□□ -0.23
SS18-217ENST00000580958 CPDO75976 1380 aa13.62□□□□□ -0.23
SS18-217ENST00000580958 ZNF853P0CG23 659 aa13.62□□□□□ -0.23
SS18-217ENST00000580958 CHRNA2Q15822 529 aa13.62□□□□□ -0.23
SS18-217ENST00000580958 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.62□□□□□ -0.23
SS18-217ENST00000580958 CT47B1P0C2W7 299 aaPredicted RBP13.61□□□□□ -0.23
SS18-217ENST00000580958 RARSP54136 660 aaKnown RBP13.61□□□□□ -0.23
SS18-217ENST00000580958 MCM10Q7L590 875 aa13.61□□□□□ -0.23
SS18-217ENST00000580958 EXOC6Q8TAG9 804 aa13.61□□□□□ -0.23
SS18-217ENST00000580958 ERBB3P21860 1342 aa13.61□□□□□ -0.23
SS18-217ENST00000580958 COL22A1Q8NFW1 1626 aaPredicted RBP13.61□□□□□ -0.23
SS18-217ENST00000580958 CRBNQ96SW2 442 aa13.6□□□□□ -0.23
SS18-217ENST00000580958 MAP3K5Q99683 1374 aa13.59□□□□□ -0.23
SS18-217ENST00000580958 CRB1P82279 1406 aa13.59□□□□□ -0.23
SS18-217ENST00000580958 HAP1P54257 671 aaPredicted RBP13.59□□□□□ -0.23
SS18-217ENST00000580958 C20orf194Q5TEA3 1177 aa13.59□□□□□ -0.23
SS18-217ENST00000580958 RTF1Q92541 710 aaKnown RBP13.59□□□□□ -0.23
SS18-217ENST00000580958 CFAP44Q96MT7 982 aa13.59□□□□□ -0.23
SS18-217ENST00000580958 MBIPQ9NS73 344 aa13.59□□□□□ -0.23
SS18-217ENST00000580958 COL16A1Q07092 1604 aaPredicted RBP13.58□□□□□ -0.24
SS18-217ENST00000580958 HTATSF1O43719 755 aaKnown RBP13.58□□□□□ -0.24
SS18-217ENST00000580958 PKD1L3Q7Z443 1732 aa13.57□□□□□ -0.24
SS18-217ENST00000580958 GNAT3A8MTJ3 354 aa13.57□□□□□ -0.24
SS18-217ENST00000580958 CSB-PGBD3P0DP91 1061 aa13.57□□□□□ -0.24
SS18-217ENST00000580958 CANXP27824 592 aaKnown RBP13.57□□□□□ -0.24
SS18-217ENST00000580958 FXR2P51116 673 aaKnown RBP eCLIP13.57□□□□□ -0.24
SS18-217ENST00000580958 B4GALNT3Q6L9W6 998 aa13.57□□□□□ -0.24
SS18-217ENST00000580958 BCL2L13Q9BXK5 485 aa13.57□□□□□ -0.24
SS18-217ENST00000580958 PRDM11Q9NQV5 511 aa13.57□□□□□ -0.24
SS18-217ENST00000580958 NLRP2Q9NX02 1062 aa13.57□□□□□ -0.24
SS18-217ENST00000580958 PARP4Q9UKK3 1724 aaKnown RBP13.56□□□□□ -0.24
SS18-217ENST00000580958 SIPA1L3O60292 1781 aaPredicted RBP13.56□□□□□ -0.24
SS18-217ENST00000580958 COL14A1Q05707 1796 aaKnown RBP13.56□□□□□ -0.24
SS18-217ENST00000580958 KDM3BQ7LBC6 1761 aa13.56□□□□□ -0.24
SS18-217ENST00000580958 SCN11AQ9UI33 1791 aa13.56□□□□□ -0.24
SS18-217ENST00000580958 PLEKHO1Q53GL0 409 aaPredicted RBP13.56□□□□□ -0.24
SS18-217ENST00000580958 CHL1O00533 1208 aa13.55□□□□□ -0.24
SS18-217ENST00000580958 ZNF530Q6P9A1 599 aaPredicted RBP13.55□□□□□ -0.24
SS18-217ENST00000580958 SSH1Q8WYL5 1049 aa13.55□□□□□ -0.24
SS18-217ENST00000580958 COL5A2P05997 1499 aaPredicted RBP13.55□□□□□ -0.24
SS18-217ENST00000580958 ADAMTS7Q9UKP4 1686 aa13.54□□□□□ -0.24
SS18-217ENST00000580958 AMOTQ4VCS5 1084 aa13.54□□□□□ -0.24
SS18-217ENST00000580958 TSPYL6Q8N831 410 aa13.54□□□□□ -0.24
SS18-217ENST00000580958 IL17REQ8NFR9 667 aa13.54□□□□□ -0.24
SS18-217ENST00000580958 SPDYE1Q8NFV5 336 aaPredicted RBP13.54□□□□□ -0.24
SS18-217ENST00000580958 FRAT1Q92837 279 aaPredicted RBP13.54□□□□□ -0.24
SS18-217ENST00000580958 SMC4Q9NTJ3 1288 aa13.54□□□□□ -0.24
SS18-217ENST00000580958 CACNA1FO60840 1977 aa13.54□□□□□ -0.24
SS18-217ENST00000580958 MEGF6O75095 1541 aa13.54□□□□□ -0.24
SS18-217ENST00000580958 TOM1O60784 492 aa13.53□□□□□ -0.24
SS18-217ENST00000580958 VAMP4O75379 141 aa13.53□□□□□ -0.24
SS18-217ENST00000580958 C8orf58Q8NAV2 365 aa13.53□□□□□ -0.24
SS18-217ENST00000580958 MIS18AQ9NYP9 233 aa13.53□□□□□ -0.24
SS18-217ENST00000580958 CLEC11AQ9Y240 323 aa13.53□□□□□ -0.24
SS18-217ENST00000580958 SSUH2Q9Y2M2 353 aa13.53□□□□□ -0.24
SS18-217ENST00000580958 ELL2O00472 640 aaPredicted RBP13.52□□□□□ -0.25
SS18-217ENST00000580958 TATP17735 454 aaPredicted RBP13.52□□□□□ -0.25
SS18-217ENST00000580958 PIP4K2BP78356 416 aa13.52□□□□□ -0.25
SS18-217ENST00000580958 PDE3AQ14432 1141 aa13.52□□□□□ -0.25
SS18-217ENST00000580958 TWISTNBQ3B726 338 aaPredicted RBP13.52□□□□□ -0.25
SS18-217ENST00000580958 ALDH1L2Q3SY69 923 aa13.52□□□□□ -0.25
SS18-217ENST00000580958 AKAP4Q5JQC9 854 aa13.52□□□□□ -0.25
SS18-217ENST00000580958 SP7Q8TDD2 431 aaPredicted RBP13.52□□□□□ -0.25
SS18-217ENST00000580958 PANK1Q8TE04 598 aa13.52□□□□□ -0.25
SS18-217ENST00000580958 RAPGEF4Q8WZA2 1011 aa13.52□□□□□ -0.25
SS18-217ENST00000580958 CCDC136Q96JN2 1154 aa13.52□□□□□ -0.25
SS18-217ENST00000580958 TSPYL4Q9UJ04 414 aa13.52□□□□□ -0.25
SS18-217ENST00000580958 TNNQ9UQP3 1299 aa13.52□□□□□ -0.25
SS18-217ENST00000580958 PLCH1Q4KWH8 1693 aa13.52□□□□□ -0.25
SS18-217ENST00000580958 SHANK3Q9BYB0 1731 aa13.51□□□□□ -0.25
SS18-217ENST00000580958 WDR17Q8IZU2 1322 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms