RNA–Protein interactions for RNA: ENST00000580419.5

SMARCE1-216, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 1 (best) BASIC

Gene SMARCE1, Length 1,228 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-216ENST00000580419 NBPF4Q96M43 638 aa20.09■□□□□ 0.81
SMARCE1-216ENST00000580419 QSER1Q2KHR3 1735 aa20.09■□□□□ 0.81
SMARCE1-216ENST00000580419 NSD2O96028 1365 aa20.08■□□□□ 0.81
SMARCE1-216ENST00000580419 MEGF6O75095 1541 aa20.08■□□□□ 0.81
SMARCE1-216ENST00000580419 FBLN1P23142 703 aa20.08■□□□□ 0.81
SMARCE1-216ENST00000580419 LTV1Q96GA3 475 aaPredicted RBP20.08■□□□□ 0.81
SMARCE1-216ENST00000580419 MAP2P11137 1827 aaKnown RBP20.08■□□□□ 0.8
SMARCE1-216ENST00000580419 RAPGEF4Q8WZA2 1011 aa20.07■□□□□ 0.8
SMARCE1-216ENST00000580419 WASHC2AQ641Q2 1341 aa20.06■□□□□ 0.8
SMARCE1-216ENST00000580419 LY75O60449 1722 aa20.06■□□□□ 0.8
SMARCE1-216ENST00000580419 HSP90AB2PQ58FF8 381 aa20.06■□□□□ 0.8
SMARCE1-216ENST00000580419 DDX54Q8TDD1 881 aaKnown RBP20.05■□□□□ 0.8
SMARCE1-216ENST00000580419 ACSBG1Q96GR2 724 aa20.05■□□□□ 0.8
SMARCE1-216ENST00000580419 DOT1LQ8TEK3 1739 aa20.04■□□□□ 0.8
SMARCE1-216ENST00000580419 PKD1L3Q7Z443 1732 aa20.03■□□□□ 0.8
SMARCE1-216ENST00000580419 TATP17735 454 aaPredicted RBP20.03■□□□□ 0.8
SMARCE1-216ENST00000580419 CCER1Q8TC90 406 aaPredicted RBP20.03■□□□□ 0.8
SMARCE1-216ENST00000580419 MTFR1LQ9H019 292 aa20.03■□□□□ 0.8
SMARCE1-216ENST00000580419 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.03■□□□□ 0.83e-7■■■□□ 16.6
SMARCE1-216ENST00000580419 PCDH11XQ9BZA7 1347 aa20.02■□□□□ 0.8
SMARCE1-216ENST00000580419 PCDH11YQ9BZA8 1340 aa20.02■□□□□ 0.8
SMARCE1-216ENST00000580419 SLC16A10Q8TF71 515 aa20.02■□□□□ 0.8
SMARCE1-216ENST00000580419 PPP1R1BQ9UD71 204 aaPredicted RBP20.01■□□□□ 0.79
SMARCE1-216ENST00000580419 COL24A1Q17RW2 1714 aa20.01■□□□□ 0.79
SMARCE1-216ENST00000580419 HSPA5P11021 654 aaKnown RBP20■□□□□ 0.79
SMARCE1-216ENST00000580419 PTGER2P43116 358 aa20■□□□□ 0.79
SMARCE1-216ENST00000580419 PRIM1P49642 420 aaKnown RBP20■□□□□ 0.79
SMARCE1-216ENST00000580419 AKT1S1Q96B36 256 aa20■□□□□ 0.79
SMARCE1-216ENST00000580419 LRRC4BQ9NT99 713 aa20■□□□□ 0.79
SMARCE1-216ENST00000580419 SGIP1Q9BQI5 828 aa19.99■□□□□ 0.79
SMARCE1-216ENST00000580419 POLKQ9UBT6 870 aa19.99■□□□□ 0.79
SMARCE1-216ENST00000580419 EMILIN1Q9Y6C2 1016 aa19.99■□□□□ 0.79
SMARCE1-216ENST00000580419 MAP3K5Q99683 1374 aa19.98■□□□□ 0.79
SMARCE1-216ENST00000580419 NKX1-1Q15270 411 aaPredicted RBP19.98■□□□□ 0.79
SMARCE1-216ENST00000580419 PDGFDQ9GZP0 370 aaPredicted RBP19.97■□□□□ 0.79
SMARCE1-216ENST00000580419 CYP27B1O15528 508 aa19.94■□□□□ 0.78
SMARCE1-216ENST00000580419 ZBTB7AO95365 584 aa19.94■□□□□ 0.78
SMARCE1-216ENST00000580419 USHBP1Q8N6Y0 703 aa19.94■□□□□ 0.78
SMARCE1-216ENST00000580419 SPG7Q9UQ90 795 aa19.94■□□□□ 0.78
SMARCE1-216ENST00000580419 ITGB4P16144 1822 aa19.94■□□□□ 0.78
SMARCE1-216ENST00000580419 DCAF8L1A6NGE4 600 aa19.93■□□□□ 0.78
SMARCE1-216ENST00000580419 ZNF827Q17R98 1081 aa19.93■□□□□ 0.78
SMARCE1-216ENST00000580419 SYTL4Q96C24 671 aaPredicted RBP19.93■□□□□ 0.78
SMARCE1-216ENST00000580419 EYA1Q99502 592 aa19.93■□□□□ 0.78
SMARCE1-216ENST00000580419 PANK3Q9H999 370 aa19.93■□□□□ 0.78
SMARCE1-216ENST00000580419 TUBGCP6Q96RT7 1819 aa19.91■□□□□ 0.78
SMARCE1-216ENST00000580419 SMARCC1Q92922 1105 aaPredicted RBP19.91■□□□□ 0.78
SMARCE1-216ENST00000580419 TAF1LQ8IZX4 1826 aa19.9■□□□□ 0.78
SMARCE1-216ENST00000580419 CCNL1Q9UK58 526 aaPredicted RBP19.9■□□□□ 0.78
SMARCE1-216ENST00000580419 IGSF1Q8N6C5 1336 aa19.9■□□□□ 0.78
SMARCE1-216ENST00000580419 UTRNP46939 3433 aa19.89■□□□□ 0.78
SMARCE1-216ENST00000580419 PNPLA7Q6ZV29 1317 aa19.89■□□□□ 0.77
SMARCE1-216ENST00000580419 ATF5Q9Y2D1 282 aaPredicted RBP19.89■□□□□ 0.77
SMARCE1-216ENST00000580419 TOGARAM1Q9Y4F4 1720 aa19.89■□□□□ 0.77
SMARCE1-216ENST00000580419 C5P01031 1676 aa19.88■□□□□ 0.77
SMARCE1-216ENST00000580419 PPM1GO15355 546 aaPredicted RBP19.88■□□□□ 0.77
SMARCE1-216ENST00000580419 EIF4A2Q14240 407 aaKnown RBP19.88■□□□□ 0.77
SMARCE1-216ENST00000580419 FLAD1Q8NFF5 587 aa19.88■□□□□ 0.77
SMARCE1-216ENST00000580419 ARXQ96QS3 562 aa19.88■□□□□ 0.77
SMARCE1-216ENST00000580419 SYT17Q9BSW7 474 aa19.88■□□□□ 0.77
SMARCE1-216ENST00000580419 IFNL2Q8IZJ0 200 aa19.87■□□□□ 0.77
SMARCE1-216ENST00000580419 TFCP2L1Q9NZI6 479 aa19.87■□□□□ 0.77
SMARCE1-216ENST00000580419 KNSTRNQ9Y448 316 aa19.86■□□□□ 0.77
SMARCE1-216ENST00000580419 PALLDQ8WX93 1383 aa19.85■□□□□ 0.77
SMARCE1-216ENST00000580419 POLR3GLQ9BT43 218 aa19.85■□□□□ 0.77
SMARCE1-216ENST00000580419 ZNF831Q5JPB2 1677 aa19.84■□□□□ 0.77
SMARCE1-216ENST00000580419 FHDC1Q9C0D6 1143 aaPredicted RBP19.84■□□□□ 0.77
SMARCE1-216ENST00000580419 CHD4Q14839 1912 aa19.83■□□□□ 0.77
SMARCE1-216ENST00000580419 HSP90AB1P08238 724 aaKnown RBP19.83■□□□□ 0.77
SMARCE1-216ENST00000580419 PHKG2P15735 406 aa19.83■□□□□ 0.77
SMARCE1-216ENST00000580419 POLD1P28340 1107 aa19.83■□□□□ 0.77
SMARCE1-216ENST00000580419 AMER1Q5JTC6 1135 aaPredicted RBP19.83■□□□□ 0.77
SMARCE1-216ENST00000580419 MPRIPQ6WCQ1 1025 aa19.83■□□□□ 0.77
SMARCE1-216ENST00000580419 MORC1Q86VD1 984 aa19.83■□□□□ 0.77
SMARCE1-216ENST00000580419 KDRP35968 1356 aa19.83■□□□□ 0.76
SMARCE1-216ENST00000580419 AMOTQ4VCS5 1084 aa19.82■□□□□ 0.76
SMARCE1-216ENST00000580419 PIGBQ92521 554 aa19.82■□□□□ 0.76
SMARCE1-216ENST00000580419 NPC1L1Q9UHC9 1359 aa19.82■□□□□ 0.76
SMARCE1-216ENST00000580419 ERVV-2B6SEH9 535 aa19.81■□□□□ 0.76
SMARCE1-216ENST00000580419 KIF7Q2M1P5 1343 aa19.8■□□□□ 0.76
SMARCE1-216ENST00000580419 C4BP0C0L5 1744 aa19.8■□□□□ 0.76
SMARCE1-216ENST00000580419 UBR3Q6ZT12 1888 aa19.79■□□□□ 0.76
SMARCE1-216ENST00000580419 PER1O15534 1290 aaPredicted RBP19.79■□□□□ 0.76
SMARCE1-216ENST00000580419 PLEKHO1Q53GL0 409 aaPredicted RBP19.79■□□□□ 0.76
SMARCE1-216ENST00000580419 DCAF5Q96JK2 942 aa19.79■□□□□ 0.76
SMARCE1-216ENST00000580419 TMOD3Q9NYL9 352 aa19.79■□□□□ 0.76
SMARCE1-216ENST00000580419 GOLGB1Q14789 3259 aaKnown RBP19.79■□□□□ 0.76
SMARCE1-216ENST00000580419 YY1P25490 414 aa19.78■□□□□ 0.76
SMARCE1-216ENST00000580419 TNNT2P45379 298 aaPredicted RBP19.78■□□□□ 0.76
SMARCE1-216ENST00000580419 KCNQ4P56696 695 aa19.78■□□□□ 0.76
SMARCE1-216ENST00000580419 COL23A1Q86Y22 540 aaPredicted RBP19.78■□□□□ 0.76
SMARCE1-216ENST00000580419 LOC102724428A0A0B4J2F2 783 aa19.77■□□□□ 0.76
SMARCE1-216ENST00000580419 SIK1P57059 783 aa19.77■□□□□ 0.76
SMARCE1-216ENST00000580419 SSFA2P28290 1259 aa19.76■□□□□ 0.75
SMARCE1-216ENST00000580419 IL13P35225 146 aa19.75■□□□□ 0.75
SMARCE1-216ENST00000580419 AK7Q96M32 723 aa19.72■□□□□ 0.75
SMARCE1-216ENST00000580419 ATG3Q9NT62 314 aa19.72■□□□□ 0.75
SMARCE1-216ENST00000580419 CICQ96RK0 1608 aaPredicted RBP19.72■□□□□ 0.75
SMARCE1-216ENST00000580419 ASAP1Q9ULH1 1129 aa19.71■□□□□ 0.75
SMARCE1-216ENST00000580419 CD2APQ9Y5K6 639 aa19.71■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms