RNA–Protein interactions for RNA: ENST00000578916.2

PTPRM-210, Transcript of protein tyrosine phosphatase, receptor type M, humanhuman

TSL 3

Gene PTPRM, Length 604 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRM-210ENST00000578916 MSL1Q68DK7 614 aa12.98□□□□□ -0.33
PTPRM-210ENST00000578916 ZCRB1Q8TBF4 217 aaKnown RBP12.98□□□□□ -0.33
PTPRM-210ENST00000578916 COL24A1Q17RW2 1714 aa12.97□□□□□ -0.33
PTPRM-210ENST00000578916 KAT6BQ8WYB5 2073 aa12.97□□□□□ -0.33
PTPRM-210ENST00000578916 SLC12A5Q9H2X9 1139 aa12.97□□□□□ -0.33
PTPRM-210ENST00000578916 TERF2IPQ9NYB0 399 aa12.97□□□□□ -0.33
PTPRM-210ENST00000578916 EDC4Q6P2E9 1401 aaKnown RBP12.96□□□□□ -0.33
PTPRM-210ENST00000578916 MON2Q7Z3U7 1717 aa12.96□□□□□ -0.33
PTPRM-210ENST00000578916 USP47Q96K76 1375 aa12.96□□□□□ -0.33
PTPRM-210ENST00000578916 HSPA6P17066 643 aa12.96□□□□□ -0.33
PTPRM-210ENST00000578916 ZNF526Q8TF50 670 aaPredicted RBP12.96□□□□□ -0.33
PTPRM-210ENST00000578916 DAXXQ9UER7 740 aaPredicted RBP12.96□□□□□ -0.33
PTPRM-210ENST00000578916 CD2APQ9Y5K6 639 aa12.96□□□□□ -0.33
PTPRM-210ENST00000578916 CD163L1Q9NR16 1453 aa12.96□□□□□ -0.34
PTPRM-210ENST00000578916 NSD2O96028 1365 aa12.95□□□□□ -0.34
PTPRM-210ENST00000578916 LTN1O94822 1766 aa12.95□□□□□ -0.34
PTPRM-210ENST00000578916 HMGB2P26583 209 aaKnown RBP12.95□□□□□ -0.34
PTPRM-210ENST00000578916 USP54Q70EL1 1684 aa12.95□□□□□ -0.34
PTPRM-210ENST00000578916 AMPHP49418 695 aa12.94□□□□□ -0.34
PTPRM-210ENST00000578916 NEUROD1Q13562 356 aa12.94□□□□□ -0.34
PTPRM-210ENST00000578916 FLAD1Q8NFF5 587 aa12.94□□□□□ -0.34
PTPRM-210ENST00000578916 SIN3AQ96ST3 1273 aa12.94□□□□□ -0.34
PTPRM-210ENST00000578916 HOXC9P31274 260 aa12.93□□□□□ -0.34
PTPRM-210ENST00000578916 COG3Q96JB2 828 aa12.93□□□□□ -0.34
PTPRM-210ENST00000578916 A0A1W2PP64 1363 aa12.93□□□□□ -0.34
PTPRM-210ENST00000578916 TUBGCP6Q96RT7 1819 aa12.92□□□□□ -0.34
PTPRM-210ENST00000578916 CARD11Q9BXL7 1154 aa12.92□□□□□ -0.34
PTPRM-210ENST00000578916 MAP3K19Q56UN5 1328 aa12.91□□□□□ -0.34
PTPRM-210ENST00000578916 LY75O60449 1722 aa12.91□□□□□ -0.34
PTPRM-210ENST00000578916 DOT1LQ8TEK3 1739 aa12.91□□□□□ -0.34
PTPRM-210ENST00000578916 ADCY9O60503 1353 aa12.91□□□□□ -0.34
PTPRM-210ENST00000578916 FAM208AQ9UK61 1670 aaKnown RBP12.9□□□□□ -0.34
PTPRM-210ENST00000578916 MEGF6O75095 1541 aa12.9□□□□□ -0.34
PTPRM-210ENST00000578916 RAPGEF4Q8WZA2 1011 aa12.9□□□□□ -0.34
PTPRM-210ENST00000578916 WWC3Q9ULE0 1092 aa12.9□□□□□ -0.34
PTPRM-210ENST00000578916 CGNL1Q0VF96 1302 aa12.89□□□□□ -0.35
PTPRM-210ENST00000578916 FBLN1P23142 703 aa12.89□□□□□ -0.35
PTPRM-210ENST00000578916 NCBP3Q53F19 620 aaKnown RBP12.89□□□□□ -0.35
PTPRM-210ENST00000578916 NBPF6Q5VWK0 638 aa12.89□□□□□ -0.35
PTPRM-210ENST00000578916 NBPF4Q96M43 638 aa12.89□□□□□ -0.35
PTPRM-210ENST00000578916 PUS7Q96PZ0 661 aaKnown RBP12.89□□□□□ -0.35
PTPRM-210ENST00000578916 IGSF1Q8N6C5 1336 aa12.88□□□□□ -0.35
PTPRM-210ENST00000578916 TATP17735 454 aaPredicted RBP12.88□□□□□ -0.35
PTPRM-210ENST00000578916 USHBP1Q8N6Y0 703 aa12.88□□□□□ -0.35
PTPRM-210ENST00000578916 AK7Q96M32 723 aa12.88□□□□□ -0.35
PTPRM-210ENST00000578916 PALLDQ8WX93 1383 aa12.88□□□□□ -0.35
PTPRM-210ENST00000578916 PHF14O94880 888 aa12.87□□□□□ -0.35
PTPRM-210ENST00000578916 MPRIPQ6WCQ1 1025 aa12.87□□□□□ -0.35
PTPRM-210ENST00000578916 KIF3CO14782 793 aa12.86□□□□□ -0.35
PTPRM-210ENST00000578916 APLP1P51693 650 aa12.86□□□□□ -0.35
PTPRM-210ENST00000578916 SMARCC1Q92922 1105 aaPredicted RBP12.86□□□□□ -0.35
PTPRM-210ENST00000578916 SMG6Q86US8 1419 aaKnown RBP12.86□□□□□ -0.35
PTPRM-210ENST00000578916 PCDH11XQ9BZA7 1347 aa12.86□□□□□ -0.35
PTPRM-210ENST00000578916 PCDH11YQ9BZA8 1340 aa12.86□□□□□ -0.35
PTPRM-210ENST00000578916 RTL1A6NKG5 1358 aa12.85□□□□□ -0.35
PTPRM-210ENST00000578916 RRS1Q15050 365 aaKnown RBP12.85□□□□□ -0.35
PTPRM-210ENST00000578916 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.84□□□□□ -0.35
PTPRM-210ENST00000578916 KCNA4P22459 653 aa12.84□□□□□ -0.35
PTPRM-210ENST00000578916 SMIM5Q71RC9 77 aa12.84□□□□□ -0.35
PTPRM-210ENST00000578916 C5P01031 1676 aa12.83□□□□□ -0.35
PTPRM-210ENST00000578916 NSD3Q9BZ95 1437 aa12.83□□□□□ -0.36
PTPRM-210ENST00000578916 AMIGO3Q86WK7 504 aa12.83□□□□□ -0.36
PTPRM-210ENST00000578916 SSFA2P28290 1259 aa12.82□□□□□ -0.36
PTPRM-210ENST00000578916 CYP27B1O15528 508 aa12.81□□□□□ -0.36
PTPRM-210ENST00000578916 TOMM70O94826 608 aa12.81□□□□□ -0.36
PTPRM-210ENST00000578916 HSP90AB2PQ58FF8 381 aa12.81□□□□□ -0.36
PTPRM-210ENST00000578916 GGNBP2Q9H3C7 697 aa12.81□□□□□ -0.36
PTPRM-210ENST00000578916 RGPD2P0DJD1 1756 aa12.81□□□□□ -0.36
PTPRM-210ENST00000578916 C4BP0C0L5 1744 aa12.8□□□□□ -0.36
PTPRM-210ENST00000578916 DNAJC5GQ8N7S2 189 aa12.8□□□□□ -0.36
PTPRM-210ENST00000578916 PIGBQ92521 554 aa12.8□□□□□ -0.36
PTPRM-210ENST00000578916 LOC102724428A0A0B4J2F2 783 aa12.79□□□□□ -0.36
PTPRM-210ENST00000578916 FYB1O15117 783 aa12.79□□□□□ -0.36
PTPRM-210ENST00000578916 GNPATO15228 680 aa12.79□□□□□ -0.36
PTPRM-210ENST00000578916 SIK1P57059 783 aa12.79□□□□□ -0.36
PTPRM-210ENST00000578916 LINC00116Q8NCU8 138 aa12.79□□□□□ -0.36
PTPRM-210ENST00000578916 TESK2Q96S53 571 aa12.79□□□□□ -0.36
PTPRM-210ENST00000578916 BCS1LQ9Y276 419 aa12.79□□□□□ -0.36
PTPRM-210ENST00000578916 INSRP06213 1382 aa12.79□□□□□ -0.36
PTPRM-210ENST00000578916 ST20-MTHFSA0A0A6YYL1 179 aa12.78□□□□□ -0.36
PTPRM-210ENST00000578916 MMP10P09238 476 aa12.78□□□□□ -0.36
PTPRM-210ENST00000578916 ARHGAP27Q6ZUM4 889 aa12.78□□□□□ -0.36
PTPRM-210ENST00000578916 FLT4P35916 1363 aa12.78□□□□□ -0.36
PTPRM-210ENST00000578916 ATP6V1AP38606 617 aa12.77□□□□□ -0.37
PTPRM-210ENST00000578916 TGFB2P61812 414 aa12.77□□□□□ -0.37
PTPRM-210ENST00000578916 NKX1-1Q15270 411 aaPredicted RBP12.77□□□□□ -0.37
PTPRM-210ENST00000578916 TMOD3Q9NYL9 352 aa12.77□□□□□ -0.37
PTPRM-210ENST00000578916 SPG7Q9UQ90 795 aa12.77□□□□□ -0.37
PTPRM-210ENST00000578916 TAF1LQ8IZX4 1826 aa12.76□□□□□ -0.37
PTPRM-210ENST00000578916 A0A0G2JLW4 131 aa12.76□□□□□ -0.37
PTPRM-210ENST00000578916 C16orf71Q8IYS4 520 aaPredicted RBP12.76□□□□□ -0.37
PTPRM-210ENST00000578916 NMRK2Q9NPI5 230 aa12.76□□□□□ -0.37
PTPRM-210ENST00000578916 TOGARAM1Q9Y4F4 1720 aa12.76□□□□□ -0.37
PTPRM-210ENST00000578916 PXDNLA1KZ92 1463 aa12.75□□□□□ -0.37
PTPRM-210ENST00000578916 ITPK1Q13572 414 aa12.75□□□□□ -0.37
PTPRM-210ENST00000578916 TRAPPC3LQ5T215 181 aa12.75□□□□□ -0.37
PTPRM-210ENST00000578916 KIF24Q5T7B8 1368 aa12.75□□□□□ -0.37
PTPRM-210ENST00000578916 RBM46Q8TBY0 533 aaKnown RBP12.75□□□□□ -0.37
PTPRM-210ENST00000578916 TONSLQ96HA7 1378 aa12.75□□□□□ -0.37
PTPRM-210ENST00000578916 CICQ96RK0 1608 aaPredicted RBP12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms