RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 EZH2Q15910 746 aaKnown RBP26.44■■□□□ 1.82
SS18-209ENST00000578595 PKD1L3Q7Z443 1732 aa26.44■■□□□ 1.82
SS18-209ENST00000578595 RREB1Q92766 1687 aa26.44■■□□□ 1.82
SS18-209ENST00000578595 BTAF1O14981 1849 aa26.44■■□□□ 1.82
SS18-209ENST00000578595 EYA1Q99502 592 aa26.43■■□□□ 1.82
SS18-209ENST00000578595 RGPD3A6NKT7 1758 aaPredicted RBP26.42■■□□□ 1.82
SS18-209ENST00000578595 RGPD4Q7Z3J3 1758 aa26.42■■□□□ 1.82
SS18-209ENST00000578595 BCL9O00512 1426 aa26.41■■□□□ 1.82
SS18-209ENST00000578595 NUP188Q5SRE5 1749 aa26.41■■□□□ 1.82
SS18-209ENST00000578595 NPC1L1Q9UHC9 1359 aa26.41■■□□□ 1.82
SS18-209ENST00000578595 BCL11BQ9C0K0 894 aaPredicted RBP26.4■■□□□ 1.82
SS18-209ENST00000578595 MTHFSP49914 203 aa26.39■■□□□ 1.82
SS18-209ENST00000578595 PTF1AQ7RTS3 328 aa26.39■■□□□ 1.82
SS18-209ENST00000578595 SYTL4Q96C24 671 aaPredicted RBP26.38■■□□□ 1.81
SS18-209ENST00000578595 PCDH11XQ9BZA7 1347 aa26.38■■□□□ 1.81
SS18-209ENST00000578595 PCDH11YQ9BZA8 1340 aa26.38■■□□□ 1.81
SS18-209ENST00000578595 PARD3Q8TEW0 1356 aa26.37■■□□□ 1.81
SS18-209ENST00000578595 KCNQ2O43526 872 aa26.37■■□□□ 1.81
SS18-209ENST00000578595 NCAPD2Q15021 1401 aa26.37■■□□□ 1.81
SS18-209ENST00000578595 CAMKK2Q96RR4 588 aa26.36■■□□□ 1.81
SS18-209ENST00000578595 IGSF1Q8N6C5 1336 aa26.35■■□□□ 1.81
SS18-209ENST00000578595 SPG7Q9UQ90 795 aa26.34■■□□□ 1.81
SS18-209ENST00000578595 ITGB4P16144 1822 aa26.32■■□□□ 1.8
SS18-209ENST00000578595 PSDA5PKW4 1024 aaPredicted RBP26.3■■□□□ 1.8
SS18-209ENST00000578595 TOGARAM1Q9Y4F4 1720 aa26.3■■□□□ 1.8
SS18-209ENST00000578595 DDX10Q13206 875 aaKnown RBP26.29■■□□□ 1.8
SS18-209ENST00000578595 PLSCR1O15162 318 aa26.28■■□□□ 1.8
SS18-209ENST00000578595 DIAPH1O60610 1272 aaKnown RBP26.28■■□□□ 1.8
SS18-209ENST00000578595 IL13P35225 146 aa26.28■■□□□ 1.8
SS18-209ENST00000578595 PRIM1P49642 420 aaKnown RBP26.28■■□□□ 1.8
SS18-209ENST00000578595 SULT6B1Q6IMI4 303 aa26.28■■□□□ 1.8
SS18-209ENST00000578595 AEBP1Q8IUX7 1158 aa26.28■■□□□ 1.8
SS18-209ENST00000578595 CYP27B1O15528 508 aa26.27■■□□□ 1.8
SS18-209ENST00000578595 NBPF14Q5TI25 921 aa26.26■■□□□ 1.79
SS18-209ENST00000578595 CFAP53Q96M91 514 aa26.26■■□□□ 1.79
SS18-209ENST00000578595 R3HDM1Q15032 1099 aaKnown RBP26.25■■□□□ 1.79
SS18-209ENST00000578595 VIRMAQ69YN4 1812 aaKnown RBP26.24■■□□□ 1.79
SS18-209ENST00000578595 U2SURPO15042 1029 aaKnown RBP26.24■■□□□ 1.79
SS18-209ENST00000578595 HMOX1P09601 288 aa26.24■■□□□ 1.79
SS18-209ENST00000578595 PLEKHO1Q53GL0 409 aaPredicted RBP26.24■■□□□ 1.79
SS18-209ENST00000578595 COL3A1P02461 1466 aaPredicted RBP26.23■■□□□ 1.79
SS18-209ENST00000578595 TXNRD1Q16881 649 aa26.23■■□□□ 1.79
SS18-209ENST00000578595 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP26.23■■□□□ 1.79
SS18-209ENST00000578595 PPP2R1AP30153 589 aa26.22■■□□□ 1.79
SS18-209ENST00000578595 IFNL2Q8IZJ0 200 aa26.22■■□□□ 1.79
SS18-209ENST00000578595 ZNF530Q6P9A1 599 aaPredicted RBP26.21■■□□□ 1.79
SS18-209ENST00000578595 LY75O60449 1722 aa26.21■■□□□ 1.79
SS18-209ENST00000578595 MPRIPQ6WCQ1 1025 aa26.2■■□□□ 1.78
SS18-209ENST00000578595 KDRP35968 1356 aa26.2■■□□□ 1.78
SS18-209ENST00000578595 PLEKHG2Q9H7P9 1386 aa26.2■■□□□ 1.78
SS18-209ENST00000578595 PHKG2P15735 406 aa26.19■■□□□ 1.78
SS18-209ENST00000578595 AMOTQ4VCS5 1084 aa26.18■■□□□ 1.78
SS18-209ENST00000578595 C1orf141Q5JVX7 400 aa26.18■■□□□ 1.78
SS18-209ENST00000578595 PROM2Q8N271 834 aa26.16■■□□□ 1.78
SS18-209ENST00000578595 STK32BQ9NY57 414 aa26.15■■□□□ 1.78
SS18-209ENST00000578595 SCN11AQ9UI33 1791 aa26.15■■□□□ 1.78
SS18-209ENST00000578595 ANO8Q9HCE9 1232 aaPredicted RBP26.14■■□□□ 1.78
SS18-209ENST00000578595 TMOD3Q9NYL9 352 aa26.14■■□□□ 1.78
SS18-209ENST00000578595 NUDCQ9Y266 331 aa26.14■■□□□ 1.78
SS18-209ENST00000578595 HSP90AB1P08238 724 aaKnown RBP26.13■■□□□ 1.77
SS18-209ENST00000578595 NKX1-1Q15270 411 aaPredicted RBP26.13■■□□□ 1.77
SS18-209ENST00000578595 PAPPAQ13219 1627 aa26.11■■□□□ 1.77
SS18-209ENST00000578595 C5P01031 1676 aa26.11■■□□□ 1.77
SS18-209ENST00000578595 TAF1LQ8IZX4 1826 aa26.1■■□□□ 1.77
SS18-209ENST00000578595 KCNQ4P56696 695 aa26.1■■□□□ 1.77
SS18-209ENST00000578595 CCNL1Q9UK58 526 aaPredicted RBP26.1■■□□□ 1.77
SS18-209ENST00000578595 PALLDQ8WX93 1383 aa26.09■■□□□ 1.77
SS18-209ENST00000578595 U2AF1L5P0DN76 240 aaPredicted RBP26.09■■□□□ 1.77
SS18-209ENST00000578595 U2AF1Q01081 240 aaKnown RBP eCLIP26.09■■□□□ 1.772e-6■■■■□ 21.7
SS18-209ENST00000578595 DCAF5Q96JK2 942 aa26.09■■□□□ 1.77
SS18-209ENST00000578595 SLC27A3Q5K4L6 730 aa26.08■■□□□ 1.77
SS18-209ENST00000578595 TUBGCP6Q96RT7 1819 aa26.08■■□□□ 1.77
SS18-209ENST00000578595 KDM6AO15550 1401 aaPredicted RBP26.07■■□□□ 1.76
SS18-209ENST00000578595 RALBP1Q15311 655 aa26.07■■□□□ 1.76
SS18-209ENST00000578595 PIGBQ92521 554 aa26.07■■□□□ 1.76
SS18-209ENST00000578595 LRRC4BQ9NT99 713 aa26.07■■□□□ 1.76
SS18-209ENST00000578595 LRP5O75197 1615 aa26.06■■□□□ 1.76
SS18-209ENST00000578595 SMARCC1Q92922 1105 aaPredicted RBP26.06■■□□□ 1.76
SS18-209ENST00000578595 CASZ1Q86V15 1759 aa26.05■■□□□ 1.76
SS18-209ENST00000578595 CABP4P57796 275 aa26.05■■□□□ 1.76
SS18-209ENST00000578595 SLC15A2Q16348 729 aa26.05■■□□□ 1.76
SS18-209ENST00000578595 PRKAR2BP31323 418 aa26.04■■□□□ 1.76
SS18-209ENST00000578595 AKAP4Q5JQC9 854 aa26.04■■□□□ 1.76
SS18-209ENST00000578595 ZNF316A6NFI3 1004 aaPredicted RBP26.03■■□□□ 1.76
SS18-209ENST00000578595 MTHFSDQ2M296 383 aaKnown RBP26.03■■□□□ 1.76
SS18-209ENST00000578595 QSER1Q2KHR3 1735 aa26.02■■□□□ 1.76
SS18-209ENST00000578595 ERVV-2B6SEH9 535 aa26.02■■□□□ 1.76
SS18-209ENST00000578595 ZNF827Q17R98 1081 aa26.01■■□□□ 1.75
SS18-209ENST00000578595 RSPH6AQ9H0K4 717 aa26■■□□□ 1.75
SS18-209ENST00000578595 ASAP1Q9ULH1 1129 aa26■■□□□ 1.75
SS18-209ENST00000578595 MYBBP1AQ9BQG0 1328 aaKnown RBP25.99■■□□□ 1.75
SS18-209ENST00000578595 GAS2L2Q8NHY3 880 aa25.99■■□□□ 1.75
SS18-209ENST00000578595 C4BP0C0L5 1744 aa25.98■■□□□ 1.75
SS18-209ENST00000578595 NEFMP07197 916 aa25.98■■□□□ 1.75
SS18-209ENST00000578595 TFCP2L1Q9NZI6 479 aa25.98■■□□□ 1.75
SS18-209ENST00000578595 MAP3K5Q99683 1374 aa25.97■■□□□ 1.75
SS18-209ENST00000578595 DLG5Q8TDM6 1919 aa25.96■■□□□ 1.75
SS18-209ENST00000578595 RBM42Q9BTD8 480 aaKnown RBP25.96■■□□□ 1.75
SS18-209ENST00000578595 PDGFDQ9GZP0 370 aaPredicted RBP25.96■■□□□ 1.75
SS18-209ENST00000578595 ATG3Q9NT62 314 aa25.96■■□□□ 1.75
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms