RNA–Protein interactions for RNA: ENST00000578501.5

CSNK1D-208, Transcript of casein kinase 1 delta, human

TSL 2

Gene CSNK1D, Length 1,124 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CSNK1D-208	ENST00000578501	C1QTNF8	P60827	252 aa		18.68	■□□□□ 0.58
CSNK1D-208	ENST00000578501	AMER1	Q5JTC6	1135 aa	Predicted RBP	18.68	■□□□□ 0.58
CSNK1D-208	ENST00000578501	PER1	O15534	1290 aa	Predicted RBP	18.67	■□□□□ 0.58
CSNK1D-208	ENST00000578501	NBPF6	Q5VWK0	638 aa		18.67	■□□□□ 0.58
CSNK1D-208	ENST00000578501	NBPF4	Q96M43	638 aa		18.67	■□□□□ 0.58
CSNK1D-208	ENST00000578501	SYT17	Q9BSW7	474 aa		18.67	■□□□□ 0.58
CSNK1D-208	ENST00000578501	STK32B	Q9NY57	414 aa		18.67	■□□□□ 0.58
CSNK1D-208	ENST00000578501	CASZ1	Q86V15	1759 aa		18.66	■□□□□ 0.58
CSNK1D-208	ENST00000578501	ATF5	Q9Y2D1	282 aa	Predicted RBP	18.66	■□□□□ 0.58
CSNK1D-208	ENST00000578501	PPM1G	O15355	546 aa	Predicted RBP	18.65	■□□□□ 0.58
CSNK1D-208	ENST00000578501	MORC1	Q86VD1	984 aa		18.65	■□□□□ 0.58
CSNK1D-208	ENST00000578501	MAP2	P11137	1827 aa	Known RBP	18.65	■□□□□ 0.58
CSNK1D-208	ENST00000578501	TNNT2	P45379	298 aa	Predicted RBP	18.64	■□□□□ 0.57
CSNK1D-208	ENST00000578501	PROM2	Q8N271	834 aa		18.64	■□□□□ 0.57
CSNK1D-208	ENST00000578501	FHDC1	Q9C0D6	1143 aa	Predicted RBP	18.64	■□□□□ 0.57
CSNK1D-208	ENST00000578501	PDGFD	Q9GZP0	370 aa	Predicted RBP	18.64	■□□□□ 0.57
CSNK1D-208	ENST00000578501	MTFR1L	Q9H019	292 aa		18.64	■□□□□ 0.57
CSNK1D-208	ENST00000578501	SLC15A2	Q16348	729 aa		18.63	■□□□□ 0.57
CSNK1D-208	ENST00000578501	TXNRD1	Q16881	649 aa		18.62	■□□□□ 0.57
CSNK1D-208	ENST00000578501	IFFO2	Q5TF58	517 aa		18.62	■□□□□ 0.57
CSNK1D-208	ENST00000578501	NCAPD2	Q15021	1401 aa		18.62	■□□□□ 0.57
CSNK1D-208	ENST00000578501	RGPD2	P0DJD1	1756 aa		18.62	■□□□□ 0.57
CSNK1D-208	ENST00000578501	SBF2	Q86WG5	1849 aa		18.61	■□□□□ 0.57
CSNK1D-208	ENST00000578501	NPC1L1	Q9UHC9	1359 aa		18.61	■□□□□ 0.57
CSNK1D-208	ENST00000578501	MEGF6	O75095	1541 aa		18.6	■□□□□ 0.57
CSNK1D-208	ENST00000578501	ZCRB1	Q8TBF4	217 aa	Known RBP	18.6	■□□□□ 0.57
CSNK1D-208	ENST00000578501	RAPGEF4	Q8WZA2	1011 aa		18.6	■□□□□ 0.57
CSNK1D-208	ENST00000578501	PTF1A	Q7RTS3	328 aa		18.59	■□□□□ 0.57
CSNK1D-208	ENST00000578501	USHBP1	Q8N6Y0	703 aa		18.59	■□□□□ 0.57
CSNK1D-208	ENST00000578501	TAT	P17735	454 aa	Predicted RBP	18.58	■□□□□ 0.56
CSNK1D-208	ENST00000578501	EIF4A2	Q14240	407 aa	Known RBP	18.58	■□□□□ 0.56
CSNK1D-208	ENST00000578501	EYA1	Q99502	592 aa		18.58	■□□□□ 0.56
CSNK1D-208	ENST00000578501	DDX54	Q8TDD1	881 aa	Known RBP	18.57	■□□□□ 0.56
CSNK1D-208	ENST00000578501	ARX	Q96QS3	562 aa		18.57	■□□□□ 0.56
CSNK1D-208	ENST00000578501	SGIP1	Q9BQI5	828 aa		18.57	■□□□□ 0.56
CSNK1D-208	ENST00000578501	CHD4	Q14839	1912 aa		18.57	■□□□□ 0.56
CSNK1D-208	ENST00000578501	MAP3K5	Q99683	1374 aa		18.55	■□□□□ 0.56
CSNK1D-208	ENST00000578501	PLEKHG2	Q9H7P9	1386 aa		18.55	■□□□□ 0.56
CSNK1D-208	ENST00000578501	NHS	Q6T4R5	1651 aa		18.54	■□□□□ 0.56
CSNK1D-208	ENST00000578501	GIGYF1	O75420	1035 aa	Predicted RBP	18.54	■□□□□ 0.56
CSNK1D-208	ENST00000578501	GPR162	Q16538	588 aa		18.54	■□□□□ 0.56
CSNK1D-208	ENST00000578501	CC2D1B	Q5T0F9	858 aa	Known RBP	18.54	■□□□□ 0.56
CSNK1D-208	ENST00000578501	IGSF1	Q8N6C5	1336 aa		18.53	■□□□□ 0.56
CSNK1D-208	ENST00000578501	SHANK3	Q9BYB0	1731 aa		18.53	■□□□□ 0.56
CSNK1D-208	ENST00000578501	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	18.53	■□□□□ 0.56
CSNK1D-208	ENST00000578501	PCDH11X	Q9BZA7	1347 aa		18.52	■□□□□ 0.56
CSNK1D-208	ENST00000578501	PCDH11Y	Q9BZA8	1340 aa		18.52	■□□□□ 0.56
CSNK1D-208	ENST00000578501	ACSBG1	Q96GR2	724 aa		18.52	■□□□□ 0.56
CSNK1D-208	ENST00000578501	MTHFS	P49914	203 aa		18.51	■□□□□ 0.55
CSNK1D-208	ENST00000578501	SPG7	Q9UQ90	795 aa		18.5	■□□□□ 0.55
CSNK1D-208	ENST00000578501	IL13	P35225	146 aa		18.49	■□□□□ 0.55
CSNK1D-208	ENST00000578501	PKD1L3	Q7Z443	1732 aa		18.49	■□□□□ 0.55
CSNK1D-208	ENST00000578501	CYP27B1	O15528	508 aa		18.48	■□□□□ 0.55
CSNK1D-208	ENST00000578501	PRIM1	P49642	420 aa	Known RBP	18.48	■□□□□ 0.55
CSNK1D-208	ENST00000578501	SLC16A10	Q8TF71	515 aa		18.48	■□□□□ 0.55
CSNK1D-208	ENST00000578501	UTRN	P46939	3433 aa		18.48	■□□□□ 0.55
CSNK1D-208	ENST00000578501	ZEB1	P37275	1124 aa	Predicted RBP	18.47	■□□□□ 0.55
CSNK1D-208	ENST00000578501	NKX1-1	Q15270	411 aa	Predicted RBP	18.47	■□□□□ 0.55
CSNK1D-208	ENST00000578501	POLD1	P28340	1107 aa		18.46	■□□□□ 0.55
CSNK1D-208	ENST00000578501	KDR	P35968	1356 aa		18.45	■□□□□ 0.54
CSNK1D-208	ENST00000578501	BTAF1	O14981	1849 aa		18.45	■□□□□ 0.54
CSNK1D-208	ENST00000578501	SYTL4	Q96C24	671 aa	Predicted RBP	18.44	■□□□□ 0.54
CSNK1D-208	ENST00000578501	DOT1L	Q8TEK3	1739 aa		18.43	■□□□□ 0.54
CSNK1D-208	ENST00000578501	DIAPH1	O60610	1272 aa	Known RBP	18.43	■□□□□ 0.54
CSNK1D-208	ENST00000578501	AMOT	Q4VCS5	1084 aa		18.43	■□□□□ 0.54
CSNK1D-208	ENST00000578501	SULT6B1	Q6IMI4	303 aa		18.43	■□□□□ 0.54
CSNK1D-208	ENST00000578501	IFNL2	Q8IZJ0	200 aa		18.43	■□□□□ 0.54
CSNK1D-208	ENST00000578501	PHKG2	P15735	406 aa		18.42	■□□□□ 0.54
CSNK1D-208	ENST00000578501	PLEKHO1	Q53GL0	409 aa	Predicted RBP	18.42	■□□□□ 0.54
CSNK1D-208	ENST00000578501	AEBP1	Q8IUX7	1158 aa		18.42	■□□□□ 0.54
CSNK1D-208	ENST00000578501	PELP1	Q8IZL8	1130 aa	Known RBP	18.42	■□□□□ 0.54
CSNK1D-208	ENST00000578501	KLHL34	Q8N239	644 aa		18.42	■□□□□ 0.54
CSNK1D-208	ENST00000578501	GRIN3B	O60391	1043 aa		18.41	■□□□□ 0.54
CSNK1D-208	ENST00000578501	CNGB1	Q14028	1251 aa	Predicted RBP	18.41	■□□□□ 0.54
CSNK1D-208	ENST00000578501	SLC27A3	Q5K4L6	730 aa		18.41	■□□□□ 0.54
CSNK1D-208	ENST00000578501	KAT6B	Q8WYB5	2073 aa		18.41	■□□□□ 0.54
CSNK1D-208	ENST00000578501	ZNF827	Q17R98	1081 aa		18.4	■□□□□ 0.54
CSNK1D-208	ENST00000578501	HSP90AB1	P08238	724 aa	Known RBP	18.39	■□□□□ 0.53
CSNK1D-208	ENST00000578501	COL3A1	P02461	1466 aa	Predicted RBP	18.39	■□□□□ 0.53
CSNK1D-208	ENST00000578501	PAPPA	Q13219	1627 aa		18.38	■□□□□ 0.53
CSNK1D-208	ENST00000578501	PPP2R1A	P30153	589 aa		18.38	■□□□□ 0.53
CSNK1D-208	ENST00000578501	AKT1S1	Q96B36	256 aa		18.38	■□□□□ 0.53
CSNK1D-208	ENST00000578501	CFAP53	Q96M91	514 aa		18.37	■□□□□ 0.53
CSNK1D-208	ENST00000578501	LRRC4B	Q9NT99	713 aa		18.37	■□□□□ 0.53
CSNK1D-208	ENST00000578501	HMGB2	P26583	209 aa	Known RBP	18.36	■□□□□ 0.53
CSNK1D-208	ENST00000578501	ZNF530	Q6P9A1	599 aa	Predicted RBP	18.36	■□□□□ 0.53
CSNK1D-208	ENST00000578501	MPRIP	Q6WCQ1	1025 aa		18.36	■□□□□ 0.53
CSNK1D-208	ENST00000578501	DCAF5	Q96JK2	942 aa		18.36	■□□□□ 0.53
CSNK1D-208	ENST00000578501	TOGARAM1	Q9Y4F4	1720 aa		18.36	■□□□□ 0.53
CSNK1D-208	ENST00000578501	LY75	O60449	1722 aa		18.35	■□□□□ 0.53
CSNK1D-208	ENST00000578501	ERVV-2	B6SEH9	535 aa		18.35	■□□□□ 0.53
CSNK1D-208	ENST00000578501	PIGB	Q92521	554 aa		18.35	■□□□□ 0.53
CSNK1D-208	ENST00000578501	SMARCC1	Q92922	1105 aa	Predicted RBP	18.35	■□□□□ 0.53
CSNK1D-208	ENST00000578501	TFCP2L1	Q9NZI6	479 aa		18.35	■□□□□ 0.53
CSNK1D-208	ENST00000578501	HMOX1	P09601	288 aa		18.34	■□□□□ 0.53
CSNK1D-208	ENST00000578501	C1orf141	Q5JVX7	400 aa		18.34	■□□□□ 0.53
CSNK1D-208	ENST00000578501	TMOD3	Q9NYL9	352 aa		18.34	■□□□□ 0.53
CSNK1D-208	ENST00000578501	ITGB4	P16144	1822 aa		18.33	■□□□□ 0.53
CSNK1D-208	ENST00000578501	PALLD	Q8WX93	1383 aa		18.32	■□□□□ 0.52
CSNK1D-208	ENST00000578501	PNPLA7	Q6ZV29	1317 aa		18.32	■□□□□ 0.52

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