RNA–Protein interactions for RNA: ENST00000576713.6

NPLOC4-219, Transcript of NPL4 homolog, ubiquitin recognition factor, humanhuman

TSL 5

Gene NPLOC4, Length 571 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPLOC4-219ENST00000576713 TMC1Q8TDI8 760 aa13.25□□□□□ -0.29
NPLOC4-219ENST00000576713 PUS7Q96PZ0 661 aaKnown RBP13.25□□□□□ -0.29
NPLOC4-219ENST00000576713 ARHGEF10O15013 1369 aa13.24□□□□□ -0.29
NPLOC4-219ENST00000576713 KTN1Q86UP2 1357 aaKnown RBP13.23□□□□□ -0.29
NPLOC4-219ENST00000576713 TTC21BQ7Z4L5 1316 aa13.23□□□□□ -0.29
NPLOC4-219ENST00000576713 DPYSL4O14531 572 aa13.23□□□□□ -0.29
NPLOC4-219ENST00000576713 SEMA3EO15041 775 aa13.22□□□□□ -0.29
NPLOC4-219ENST00000576713 MEX3CQ5U5Q3 659 aaKnown RBP13.22□□□□□ -0.29
NPLOC4-219ENST00000576713 MAMSTRQ6ZN01 415 aa13.21□□□□□ -0.29
NPLOC4-219ENST00000576713 C8orf37Q96NL8 207 aa13.21□□□□□ -0.29
NPLOC4-219ENST00000576713 USP19O94966 1318 aa13.2□□□□□ -0.3
NPLOC4-219ENST00000576713 AFF2P51816 1311 aa13.2□□□□□ -0.3
NPLOC4-219ENST00000576713 SLIT3O75094 1523 aa13.2□□□□□ -0.3
NPLOC4-219ENST00000576713 ZNF772Q68DY9 489 aaPredicted RBP13.2□□□□□ -0.3
NPLOC4-219ENST00000576713 NME9Q86XW9 330 aa13.2□□□□□ -0.3
NPLOC4-219ENST00000576713 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.2□□□□□ -0.3
NPLOC4-219ENST00000576713 ABTB2Q8N961 1025 aa13.2□□□□□ -0.3
NPLOC4-219ENST00000576713 OXER1Q8TDS5 423 aa13.2□□□□□ -0.3
NPLOC4-219ENST00000576713 CARD14Q9BXL6 1004 aa13.2□□□□□ -0.3
NPLOC4-219ENST00000576713 SCUBE2Q9NQ36 999 aa13.2□□□□□ -0.3
NPLOC4-219ENST00000576713 ANKRD36BQ8N2N9 1353 aa13.2□□□□□ -0.3
NPLOC4-219ENST00000576713 TESPA1A2RU30 521 aaPredicted RBP13.19□□□□□ -0.3
NPLOC4-219ENST00000576713 UPF1Q92900 1129 aaKnown RBP eCLIP13.19□□□□□ -0.3
NPLOC4-219ENST00000576713 EDC4Q6P2E9 1401 aaKnown RBP13.19□□□□□ -0.3
NPLOC4-219ENST00000576713 NINLQ9Y2I6 1382 aa13.19□□□□□ -0.3
NPLOC4-219ENST00000576713 KIF7Q2M1P5 1343 aa13.18□□□□□ -0.3
NPLOC4-219ENST00000576713 BCL9LQ86UU0 1499 aa13.18□□□□□ -0.3
NPLOC4-219ENST00000576713 POLR3GLQ9BT43 218 aa13.18□□□□□ -0.3
NPLOC4-219ENST00000576713 BRD4O60885 1362 aaPredicted RBP13.18□□□□□ -0.3
NPLOC4-219ENST00000576713 SLIT2O94813 1529 aa13.18□□□□□ -0.3
NPLOC4-219ENST00000576713 PLCH1Q4KWH8 1693 aa13.18□□□□□ -0.3
NPLOC4-219ENST00000576713 USP54Q70EL1 1684 aa13.18□□□□□ -0.3
NPLOC4-219ENST00000576713 FAM83GA6ND36 823 aa13.17□□□□□ -0.3
NPLOC4-219ENST00000576713 SPDYE16A6NNV3 312 aaPredicted RBP13.17□□□□□ -0.3
NPLOC4-219ENST00000576713 SLC34A2O95436 690 aa13.17□□□□□ -0.3
NPLOC4-219ENST00000576713 MAP3K9P80192 1104 aa13.17□□□□□ -0.3
NPLOC4-219ENST00000576713 PDIA6Q15084 440 aa13.17□□□□□ -0.3
NPLOC4-219ENST00000576713 HDGFL2Q7Z4V5 671 aaPredicted RBP13.17□□□□□ -0.3
NPLOC4-219ENST00000576713 SLAIN1Q8ND83 568 aa13.17□□□□□ -0.3
NPLOC4-219ENST00000576713 KIAA0232Q92628 1395 aa13.17□□□□□ -0.3
NPLOC4-219ENST00000576713 OVOS2A0A0J9YW53 1432 aa13.16□□□□□ -0.3
NPLOC4-219ENST00000576713 OVOS2Q6IE36 1432 aa13.16□□□□□ -0.3
NPLOC4-219ENST00000576713 FNBP4Q8N3X1 1017 aaPredicted RBP13.16□□□□□ -0.3
NPLOC4-219ENST00000576713 NGLY1Q96IV0 654 aa13.16□□□□□ -0.3
NPLOC4-219ENST00000576713 TERF2IPQ9NYB0 399 aa13.16□□□□□ -0.3
NPLOC4-219ENST00000576713 NFAT5O94916 1531 aa13.16□□□□□ -0.3
NPLOC4-219ENST00000576713 NRAPQ86VF7 1730 aa13.16□□□□□ -0.3
NPLOC4-219ENST00000576713 WASHC2AQ641Q2 1341 aa13.15□□□□□ -0.3
NPLOC4-219ENST00000576713 TTC21AQ8NDW8 1320 aa13.15□□□□□ -0.3
NPLOC4-219ENST00000576713 ZC3H6P61129 1189 aaKnown RBP13.15□□□□□ -0.3
NPLOC4-219ENST00000576713 CHRNA2Q15822 529 aa13.15□□□□□ -0.3
NPLOC4-219ENST00000576713 CDCA8Q53HL2 280 aa13.15□□□□□ -0.3
NPLOC4-219ENST00000576713 PTCD2Q8WV60 388 aaKnown RBP13.15□□□□□ -0.3
NPLOC4-219ENST00000576713 USP31Q70CQ4 1352 aa13.15□□□□□ -0.3
NPLOC4-219ENST00000576713 LMO7Q8WWI1 1683 aa13.15□□□□□ -0.31
NPLOC4-219ENST00000576713 NSD3Q9BZ95 1437 aa13.14□□□□□ -0.31
NPLOC4-219ENST00000576713 GCP02774 474 aa13.14□□□□□ -0.31
NPLOC4-219ENST00000576713 NLRP13Q86W25 1043 aa13.14□□□□□ -0.31
NPLOC4-219ENST00000576713 CCDC7Q96M83 1385 aa13.14□□□□□ -0.31
NPLOC4-219ENST00000576713 CDK12Q9NYV4 1490 aaPredicted RBP13.14□□□□□ -0.31
NPLOC4-219ENST00000576713 EP400Q96L91 3159 aa13.13□□□□□ -0.31
NPLOC4-219ENST00000576713 COL14A1Q05707 1796 aaKnown RBP13.13□□□□□ -0.31
NPLOC4-219ENST00000576713 FBLN1P23142 703 aa13.13□□□□□ -0.31
NPLOC4-219ENST00000576713 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.13□□□□□ -0.31
NPLOC4-219ENST00000576713 USP21Q9UK80 565 aa13.13□□□□□ -0.31
NPLOC4-219ENST00000576713 CAMTA1Q9Y6Y1 1673 aa13.12□□□□□ -0.31
NPLOC4-219ENST00000576713 FYB1O15117 783 aa13.12□□□□□ -0.31
NPLOC4-219ENST00000576713 RXRBP28702 533 aa13.12□□□□□ -0.31
NPLOC4-219ENST00000576713 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.12□□□□□ -0.31
NPLOC4-219ENST00000576713 ATRNO75882 1429 aa13.12□□□□□ -0.31
NPLOC4-219ENST00000576713 COL18A1P39060 1754 aa13.12□□□□□ -0.31
NPLOC4-219ENST00000576713 NWD2Q9ULI1 1742 aa13.11□□□□□ -0.31
NPLOC4-219ENST00000576713 CPDO75976 1380 aa13.11□□□□□ -0.31
NPLOC4-219ENST00000576713 TPRNQ4KMQ1 711 aa13.11□□□□□ -0.31
NPLOC4-219ENST00000576713 GGNBP2Q9H3C7 697 aa13.11□□□□□ -0.31
NPLOC4-219ENST00000576713 QTRT2Q9H974 415 aaKnown RBP13.11□□□□□ -0.31
NPLOC4-219ENST00000576713 PANK3Q9H999 370 aa13.11□□□□□ -0.31
NPLOC4-219ENST00000576713 BTG4Q9NY30 223 aa13.11□□□□□ -0.31
NPLOC4-219ENST00000576713 KIF20BQ96Q89 1820 aa13.11□□□□□ -0.31
NPLOC4-219ENST00000576713 GLI3P10071 1580 aa13.11□□□□□ -0.31
NPLOC4-219ENST00000576713 TBC1D12O60347 775 aa13.1□□□□□ -0.31
NPLOC4-219ENST00000576713 PRKCSHP14314 528 aaPredicted RBP13.1□□□□□ -0.31
NPLOC4-219ENST00000576713 PRDM11Q9NQV5 511 aa13.1□□□□□ -0.31
NPLOC4-219ENST00000576713 TULP1O00294 542 aaPredicted RBP13.09□□□□□ -0.31
NPLOC4-219ENST00000576713 RGS12O14924 1447 aa13.09□□□□□ -0.31
NPLOC4-219ENST00000576713 MLLT3P42568 568 aaPredicted RBP13.09□□□□□ -0.31
NPLOC4-219ENST00000576713 RBM6P78332 1123 aaKnown RBP13.09□□□□□ -0.31
NPLOC4-219ENST00000576713 ARHGEF25Q86VW2 580 aa13.09□□□□□ -0.31
NPLOC4-219ENST00000576713 UNC5CLQ8IV45 518 aa13.09□□□□□ -0.31
NPLOC4-219ENST00000576713 AXIN2Q9Y2T1 843 aa13.09□□□□□ -0.31
NPLOC4-219ENST00000576713 ZBTB7CA1YPR0 619 aa13.08□□□□□ -0.32
NPLOC4-219ENST00000576713 SMYD5Q6GMV2 418 aa13.08□□□□□ -0.32
NPLOC4-219ENST00000576713 HOXB3P14651 431 aaPredicted RBP13.07□□□□□ -0.32
NPLOC4-219ENST00000576713 LHX8Q68G74 356 aa13.07□□□□□ -0.32
NPLOC4-219ENST00000576713 OTUD5Q96G74 571 aa13.07□□□□□ -0.32
NPLOC4-219ENST00000576713 TRPC5Q9UL62 973 aaPredicted RBP13.07□□□□□ -0.32
NPLOC4-219ENST00000576713 COL5A2P05997 1499 aaPredicted RBP13.07□□□□□ -0.32
NPLOC4-219ENST00000576713 LTN1O94822 1766 aa13.07□□□□□ -0.32
NPLOC4-219ENST00000576713 PEAK1Q9H792 1746 aa13.06□□□□□ -0.32
NPLOC4-219ENST00000576713 EVI5O60447 810 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms