RNA–Protein interactions for RNA: ENST00000576601.1

CIITA-211, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 4

Gene CIITA, Length 626 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-211ENST00000576601 CICQ96RK0 1608 aaPredicted RBP19.83■□□□□ 0.76
CIITA-211ENST00000576601 ANKRD24Q8TF21 1146 aa19.82■□□□□ 0.76
CIITA-211ENST00000576601 SBNO2Q9Y2G9 1366 aa19.82■□□□□ 0.76
CIITA-211ENST00000576601 COL23A1Q86Y22 540 aaPredicted RBP19.8■□□□□ 0.76
CIITA-211ENST00000576601 KIAA1551Q9HCM1 1747 aa19.79■□□□□ 0.76
CIITA-211ENST00000576601 ZNF526Q8TF50 670 aaPredicted RBP19.79■□□□□ 0.76
CIITA-211ENST00000576601 SIN3AQ96ST3 1273 aa19.79■□□□□ 0.76
CIITA-211ENST00000576601 WDR90Q96KV7 1748 aa19.79■□□□□ 0.76
CIITA-211ENST00000576601 ITGB4P16144 1822 aa19.79■□□□□ 0.76
CIITA-211ENST00000576601 MSL1Q68DK7 614 aa19.78■□□□□ 0.76
CIITA-211ENST00000576601 NME9Q86XW9 330 aa19.78■□□□□ 0.76
CIITA-211ENST00000576601 L3MBTL2Q969R5 705 aa19.78■□□□□ 0.76
CIITA-211ENST00000576601 MEGF6O75095 1541 aa19.77■□□□□ 0.76
CIITA-211ENST00000576601 C4BP0C0L5 1744 aa19.77■□□□□ 0.76
CIITA-211ENST00000576601 PRIM1P49642 420 aaKnown RBP19.77■□□□□ 0.76
CIITA-211ENST00000576601 KIF13BQ9NQT8 1826 aa19.76■□□□□ 0.75
CIITA-211ENST00000576601 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.76■□□□□ 0.75
CIITA-211ENST00000576601 DDX54Q8TDD1 881 aaKnown RBP19.76■□□□□ 0.75
CIITA-211ENST00000576601 KIF3CO14782 793 aa19.75■□□□□ 0.75
CIITA-211ENST00000576601 CCNL1Q9UK58 526 aaPredicted RBP19.75■□□□□ 0.75
CIITA-211ENST00000576601 CD2APQ9Y5K6 639 aa19.75■□□□□ 0.75
CIITA-211ENST00000576601 SYTL4Q96C24 671 aaPredicted RBP19.74■□□□□ 0.75
CIITA-211ENST00000576601 MAP2P11137 1827 aaKnown RBP19.73■□□□□ 0.75
CIITA-211ENST00000576601 BRCA1P38398 1863 aaKnown RBP19.73■□□□□ 0.75
CIITA-211ENST00000576601 N4BP2Q86UW6 1770 aaPredicted RBP19.71■□□□□ 0.75
CIITA-211ENST00000576601 EDC4Q6P2E9 1401 aaKnown RBP19.7■□□□□ 0.74
CIITA-211ENST00000576601 MSH5O43196 834 aa19.7■□□□□ 0.74
CIITA-211ENST00000576601 DNAJC5GQ8N7S2 189 aa19.7■□□□□ 0.74
CIITA-211ENST00000576601 ROCK2O75116 1388 aaKnown RBP19.7■□□□□ 0.74
CIITA-211ENST00000576601 NEUROD1Q13562 356 aa19.69■□□□□ 0.74
CIITA-211ENST00000576601 AMIGO3Q86WK7 504 aa19.69■□□□□ 0.74
CIITA-211ENST00000576601 USP47Q96K76 1375 aa19.69■□□□□ 0.74
CIITA-211ENST00000576601 IP6K1Q92551 441 aa19.68■□□□□ 0.74
CIITA-211ENST00000576601 IGSF1Q8N6C5 1336 aa19.68■□□□□ 0.74
CIITA-211ENST00000576601 WWC3Q9ULE0 1092 aa19.67■□□□□ 0.74
CIITA-211ENST00000576601 A0A1W2PP64 1363 aa19.66■□□□□ 0.74
CIITA-211ENST00000576601 APLP1P51693 650 aa19.65■□□□□ 0.74
CIITA-211ENST00000576601 LTV1Q96GA3 475 aaPredicted RBP19.65■□□□□ 0.74
CIITA-211ENST00000576601 PKD1L3Q7Z443 1732 aa19.65■□□□□ 0.74
CIITA-211ENST00000576601 ZCRB1Q8TBF4 217 aaKnown RBP19.63■□□□□ 0.73
CIITA-211ENST00000576601 ARFGEF1Q9Y6D6 1849 aa19.62■□□□□ 0.73
CIITA-211ENST00000576601 PALLDQ8WX93 1383 aa19.62■□□□□ 0.73
CIITA-211ENST00000576601 MAP3K19Q56UN5 1328 aa19.61■□□□□ 0.73
CIITA-211ENST00000576601 PXDNLA1KZ92 1463 aa19.6■□□□□ 0.73
CIITA-211ENST00000576601 HOXC9P31274 260 aa19.6■□□□□ 0.73
CIITA-211ENST00000576601 SMIM5Q71RC9 77 aa19.6■□□□□ 0.73
CIITA-211ENST00000576601 COL13A1Q5TAT6 717 aaPredicted RBP19.59■□□□□ 0.73
CIITA-211ENST00000576601 FLAD1Q8NFF5 587 aa19.59■□□□□ 0.73
CIITA-211ENST00000576601 SLC12A5Q9H2X9 1139 aa19.59■□□□□ 0.73
CIITA-211ENST00000576601 SBF1O95248 1867 aa19.57■□□□□ 0.72
CIITA-211ENST00000576601 TOMM70O94826 608 aa19.57■□□□□ 0.72
CIITA-211ENST00000576601 FBLN1P23142 703 aa19.57■□□□□ 0.72
CIITA-211ENST00000576601 HDGFL2Q7Z4V5 671 aaPredicted RBP19.56■□□□□ 0.72
CIITA-211ENST00000576601 RTL1A6NKG5 1358 aa19.56■□□□□ 0.72
CIITA-211ENST00000576601 NBPF6Q5VWK0 638 aa19.55■□□□□ 0.72
CIITA-211ENST00000576601 NBPF4Q96M43 638 aa19.55■□□□□ 0.72
CIITA-211ENST00000576601 TNRC6CQ9HCJ0 1690 aaKnown RBP19.55■□□□□ 0.72
CIITA-211ENST00000576601 NSD3Q9BZ95 1437 aa19.54■□□□□ 0.72
CIITA-211ENST00000576601 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP19.54■□□□□ 0.72
CIITA-211ENST00000576601 HTRA3P83110 453 aa19.54■□□□□ 0.72
CIITA-211ENST00000576601 USHBP1Q8N6Y0 703 aa19.54■□□□□ 0.72
CIITA-211ENST00000576601 TMC1Q8TDI8 760 aa19.54■□□□□ 0.72
CIITA-211ENST00000576601 NMRK2Q9NPI5 230 aa19.54■□□□□ 0.72
CIITA-211ENST00000576601 C4AP0C0L4 1744 aa19.54■□□□□ 0.72
CIITA-211ENST00000576601 CGNL1Q0VF96 1302 aa19.53■□□□□ 0.72
CIITA-211ENST00000576601 KIF20BQ96Q89 1820 aa19.53■□□□□ 0.72
CIITA-211ENST00000576601 PHF14O94880 888 aa19.53■□□□□ 0.72
CIITA-211ENST00000576601 JMYQ8N9B5 988 aa19.53■□□□□ 0.72
CIITA-211ENST00000576601 COL5A3P25940 1745 aaPredicted RBP19.53■□□□□ 0.72
CIITA-211ENST00000576601 AK7Q96M32 723 aa19.52■□□□□ 0.72
CIITA-211ENST00000576601 C10orf71Q711Q0 1435 aa19.51■□□□□ 0.71
CIITA-211ENST00000576601 KLRG1Q96E93 195 aa19.51■□□□□ 0.71
CIITA-211ENST00000576601 PCDH11XQ9BZA7 1347 aa19.51■□□□□ 0.71
CIITA-211ENST00000576601 PCDH11YQ9BZA8 1340 aa19.51■□□□□ 0.71
CIITA-211ENST00000576601 TONSLQ96HA7 1378 aa19.5■□□□□ 0.71
CIITA-211ENST00000576601 CYP27B1O15528 508 aa19.5■□□□□ 0.71
CIITA-211ENST00000576601 SSFA2P28290 1259 aa19.5■□□□□ 0.71
CIITA-211ENST00000576601 MPRIPQ6WCQ1 1025 aa19.5■□□□□ 0.71
CIITA-211ENST00000576601 CARD11Q9BXL7 1154 aa19.5■□□□□ 0.71
CIITA-211ENST00000576601 TERF2IPQ9NYB0 399 aa19.5■□□□□ 0.71
CIITA-211ENST00000576601 ANKRD26Q9UPS8 1709 aa19.49■□□□□ 0.71
CIITA-211ENST00000576601 CAPN15O75808 1086 aa19.49■□□□□ 0.71
CIITA-211ENST00000576601 AMPHP49418 695 aa19.49■□□□□ 0.71
CIITA-211ENST00000576601 LINC00116Q8NCU8 138 aa19.49■□□□□ 0.71
CIITA-211ENST00000576601 MYH14Q7Z406 1995 aaKnown RBP19.49■□□□□ 0.71
CIITA-211ENST00000576601 ZNF831Q5JPB2 1677 aa19.49■□□□□ 0.71
CIITA-211ENST00000576601 RBM46Q8TBY0 533 aaKnown RBP19.47■□□□□ 0.71
CIITA-211ENST00000576601 RAPGEF4Q8WZA2 1011 aa19.47■□□□□ 0.71
CIITA-211ENST00000576601 COG3Q96JB2 828 aa19.47■□□□□ 0.71
CIITA-211ENST00000576601 KCPQ6ZWJ8 1503 aa19.46■□□□□ 0.71
CIITA-211ENST00000576601 NCAPD2Q15021 1401 aa19.46■□□□□ 0.71
CIITA-211ENST00000576601 RRS1Q15050 365 aaKnown RBP19.46■□□□□ 0.71
CIITA-211ENST00000576601 SMG6Q86US8 1419 aaKnown RBP19.45■□□□□ 0.7
CIITA-211ENST00000576601 MMP10P09238 476 aa19.45■□□□□ 0.7
CIITA-211ENST00000576601 PRELPP51888 382 aa19.45■□□□□ 0.7
CIITA-211ENST00000576601 PIGBQ92521 554 aa19.45■□□□□ 0.7
CIITA-211ENST00000576601 TATP17735 454 aaPredicted RBP19.44■□□□□ 0.7
CIITA-211ENST00000576601 HMGB2P26583 209 aaKnown RBP19.44■□□□□ 0.7
CIITA-211ENST00000576601 SMARCC1Q92922 1105 aaPredicted RBP19.44■□□□□ 0.7
CIITA-211ENST00000576601 ITPK1Q13572 414 aa19.43■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms