RNA–Protein interactions for RNA: ENST00000575338.1

SMG6-217, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 4

Gene SMG6, Length 546 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-217ENST00000575338 CHL1O00533 1208 aa8.61□□□□□ -1.03
SMG6-217ENST00000575338 SOX12O15370 315 aa8.61□□□□□ -1.03
SMG6-217ENST00000575338 HDAC1Q13547 482 aaPredicted RBP8.61□□□□□ -1.03
SMG6-217ENST00000575338 CADPS2Q86UW7 1296 aa8.61□□□□□ -1.03
SMG6-217ENST00000575338 C1orf167Q5SNV9 1468 aa8.61□□□□□ -1.03
SMG6-217ENST00000575338 NCAPD2Q15021 1401 aa8.61□□□□□ -1.03
SMG6-217ENST00000575338 MAP3K5Q99683 1374 aa8.61□□□□□ -1.03
SMG6-217ENST00000575338 LMTK3Q96Q04 1460 aa8.6□□□□□ -1.03
SMG6-217ENST00000575338 MRPL50Q8N5N7 158 aaKnown RBP8.6□□□□□ -1.03
SMG6-217ENST00000575338 EYA1Q99502 592 aa8.6□□□□□ -1.03
SMG6-217ENST00000575338 OVOS2A0A0G2JMS6 1433 aa8.6□□□□□ -1.03
SMG6-217ENST00000575338 MSH6P52701 1360 aa8.6□□□□□ -1.03
SMG6-217ENST00000575338 NPHP3Q7Z494 1330 aa8.59□□□□□ -1.03
SMG6-217ENST00000575338 STRCP1A6NGW2 1772 aa8.59□□□□□ -1.03
SMG6-217ENST00000575338 RLBP1P12271 317 aa8.59□□□□□ -1.03
SMG6-217ENST00000575338 AMOTQ4VCS5 1084 aa8.59□□□□□ -1.03
SMG6-217ENST00000575338 AEBP1Q8IUX7 1158 aa8.59□□□□□ -1.03
SMG6-217ENST00000575338 GCC1Q96CN9 775 aa8.59□□□□□ -1.03
SMG6-217ENST00000575338 IPO9Q96P70 1041 aaKnown RBP8.59□□□□□ -1.03
SMG6-217ENST00000575338 UPF2Q9HAU5 1272 aaKnown RBP8.59□□□□□ -1.03
SMG6-217ENST00000575338 ZBTB47Q9UFB7 747 aaPredicted RBP8.59□□□□□ -1.03
SMG6-217ENST00000575338 TSPYL4Q9UJ04 414 aa8.59□□□□□ -1.03
SMG6-217ENST00000575338 CRB1P82279 1406 aa8.59□□□□□ -1.03
SMG6-217ENST00000575338 RGPD2P0DJD1 1756 aa8.58□□□□□ -1.04
SMG6-217ENST00000575338 ABCC4O15439 1325 aa8.58□□□□□ -1.04
SMG6-217ENST00000575338 USP19O94966 1318 aa8.58□□□□□ -1.04
SMG6-217ENST00000575338 MTHFSDQ2M296 383 aaKnown RBP8.58□□□□□ -1.04
SMG6-217ENST00000575338 KRT28Q7Z3Y7 464 aa8.58□□□□□ -1.04
SMG6-217ENST00000575338 TMEM57Q8N5G2 664 aa8.58□□□□□ -1.04
SMG6-217ENST00000575338 STK31Q9BXU1 1019 aa8.58□□□□□ -1.04
SMG6-217ENST00000575338 ZBTB40Q9NUA8 1239 aa8.58□□□□□ -1.04
SMG6-217ENST00000575338 KDM3BQ7LBC6 1761 aa8.58□□□□□ -1.04
SMG6-217ENST00000575338 MED1Q15648 1581 aaPredicted RBP8.57□□□□□ -1.04
SMG6-217ENST00000575338 FAM83GA6ND36 823 aa8.57□□□□□ -1.04
SMG6-217ENST00000575338 IGHDP01880 384 aa8.57□□□□□ -1.04
SMG6-217ENST00000575338 RGS3P49796 1198 aa8.57□□□□□ -1.04
SMG6-217ENST00000575338 PLEKHO1Q53GL0 409 aaPredicted RBP8.57□□□□□ -1.04
SMG6-217ENST00000575338 FBXO41Q8TF61 875 aa8.57□□□□□ -1.04
SMG6-217ENST00000575338 THUMPD2Q9BTF0 503 aaKnown RBP8.57□□□□□ -1.04
SMG6-217ENST00000575338 DAXXQ9UER7 740 aaPredicted RBP8.57□□□□□ -1.04
SMG6-217ENST00000575338 NOP58Q9Y2X3 529 aaKnown RBP8.57□□□□□ -1.04
SMG6-217ENST00000575338 RGPD5Q99666 1765 aa8.57□□□□□ -1.04
SMG6-217ENST00000575338 TMEM94Q12767 1356 aa8.57□□□□□ -1.04
SMG6-217ENST00000575338 XIRP1Q702N8 1843 aaKnown RBP8.57□□□□□ -1.04
SMG6-217ENST00000575338 FOXO3O43524 673 aa8.56□□□□□ -1.04
SMG6-217ENST00000575338 GCP02774 474 aa8.56□□□□□ -1.04
SMG6-217ENST00000575338 HOXB7P09629 217 aa8.56□□□□□ -1.04
SMG6-217ENST00000575338 TAF7Q15545 349 aaPredicted RBP8.56□□□□□ -1.04
SMG6-217ENST00000575338 CCDC30Q5VVM6 783 aa8.56□□□□□ -1.04
SMG6-217ENST00000575338 NUTM2GQ5VZR2 741 aa8.56□□□□□ -1.04
SMG6-217ENST00000575338 MCM10Q7L590 875 aa8.56□□□□□ -1.04
SMG6-217ENST00000575338 ARHGEF25Q86VW2 580 aa8.56□□□□□ -1.04
SMG6-217ENST00000575338 C8orf58Q8NAV2 365 aa8.56□□□□□ -1.04
SMG6-217ENST00000575338 ANP32EQ9BTT0 268 aa8.56□□□□□ -1.04
SMG6-217ENST00000575338 PCDHB15Q9Y5E8 787 aa8.56□□□□□ -1.04
SMG6-217ENST00000575338 CRYBG1Q9Y4K1 1723 aa8.56□□□□□ -1.04
SMG6-217ENST00000575338 PXDNLA1KZ92 1463 aa8.56□□□□□ -1.04
SMG6-217ENST00000575338 TNS3Q68CZ2 1445 aa8.55□□□□□ -1.04
SMG6-217ENST00000575338 CCT4P50991 539 aaKnown RBP8.55□□□□□ -1.04
SMG6-217ENST00000575338 DCTN1Q14203 1278 aa8.55□□□□□ -1.04
SMG6-217ENST00000575338 AKAP4Q5JQC9 854 aa8.55□□□□□ -1.04
SMG6-217ENST00000575338 C1orf141Q5JVX7 400 aa8.55□□□□□ -1.04
SMG6-217ENST00000575338 INTS3Q68E01 1043 aaKnown RBP8.55□□□□□ -1.04
SMG6-217ENST00000575338 LMOD2Q6P5Q4 547 aa8.55□□□□□ -1.04
SMG6-217ENST00000575338 SMC5Q8IY18 1101 aa8.55□□□□□ -1.04
SMG6-217ENST00000575338 TSPYL6Q8N831 410 aa8.55□□□□□ -1.04
SMG6-217ENST00000575338 ORAI2Q96SN7 254 aa8.55□□□□□ -1.04
SMG6-217ENST00000575338 SIPA1L3O60292 1781 aaPredicted RBP8.55□□□□□ -1.04
SMG6-217ENST00000575338 STRCQ7RTU9 1775 aa8.55□□□□□ -1.04
SMG6-217ENST00000575338 SCN11AQ9UI33 1791 aa8.54□□□□□ -1.04
SMG6-217ENST00000575338 CEMIPQ8WUJ3 1361 aa8.54□□□□□ -1.04
SMG6-217ENST00000575338 ELL2O00472 640 aaPredicted RBP8.54□□□□□ -1.04
SMG6-217ENST00000575338 ZBTB7BO15156 539 aaPredicted RBP8.54□□□□□ -1.04
SMG6-217ENST00000575338 HMMRO75330 724 aa8.54□□□□□ -1.04
SMG6-217ENST00000575338 RPAP2Q8IXW5 612 aaPredicted RBP8.54□□□□□ -1.04
SMG6-217ENST00000575338 LTV1Q96GA3 475 aaPredicted RBP8.54□□□□□ -1.04
SMG6-217ENST00000575338 PDZRN3Q9UPQ7 1066 aa8.54□□□□□ -1.04
SMG6-217ENST00000575338 PARP4Q9UKK3 1724 aaKnown RBP8.54□□□□□ -1.04
SMG6-217ENST00000575338 ADAMTS7Q9UKP4 1686 aa8.53□□□□□ -1.04
SMG6-217ENST00000575338 TEFQ10587 303 aa8.53□□□□□ -1.04
SMG6-217ENST00000575338 C8orf34Q49A92 452 aa8.53□□□□□ -1.04
SMG6-217ENST00000575338 ANKRD24Q8TF21 1146 aa8.53□□□□□ -1.04
SMG6-217ENST00000575338 TNNQ9UQP3 1299 aa8.53□□□□□ -1.04
SMG6-217ENST00000575338 COL18A1P39060 1754 aa8.53□□□□□ -1.04
SMG6-217ENST00000575338 ZBTB7CA1YPR0 619 aa8.52□□□□□ -1.05
SMG6-217ENST00000575338 NPM2Q86SE8 214 aaKnown RBP8.52□□□□□ -1.05
SMG6-217ENST00000575338 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP8.52□□□□□ -1.05
SMG6-217ENST00000575338 HDAC5Q9UQL6 1122 aa8.52□□□□□ -1.05
SMG6-217ENST00000575338 PKD1L3Q7Z443 1732 aa8.51□□□□□ -1.05
SMG6-217ENST00000575338 CPDO75976 1380 aa8.51□□□□□ -1.05
SMG6-217ENST00000575338 SLC4A2P04920 1241 aa8.51□□□□□ -1.05
SMG6-217ENST00000575338 GNAI3P08754 354 aa8.51□□□□□ -1.05
SMG6-217ENST00000575338 NUCB1Q02818 461 aa8.51□□□□□ -1.05
SMG6-217ENST00000575338 BECN1Q14457 450 aa8.51□□□□□ -1.05
SMG6-217ENST00000575338 NBPF6Q5VWK0 638 aa8.51□□□□□ -1.05
SMG6-217ENST00000575338 ZNF530Q6P9A1 599 aaPredicted RBP8.51□□□□□ -1.05
SMG6-217ENST00000575338 CHD1LQ86WJ1 897 aa8.51□□□□□ -1.05
SMG6-217ENST00000575338 RAPGEF4Q8WZA2 1011 aa8.51□□□□□ -1.05
SMG6-217ENST00000575338 RBM33Q96EV2 1170 aaKnown RBP8.51□□□□□ -1.05
SMG6-217ENST00000575338 NBPF4Q96M43 638 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms