RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 PRIM1P49642 420 aaKnown RBP24.03■■□□□ 1.44
VPS53-218ENST00000575207 NLRP2Q9NX02 1062 aa24.03■■□□□ 1.44
VPS53-218ENST00000575207 ERBB3P21860 1342 aa24.03■■□□□ 1.44
VPS53-218ENST00000575207 PRDM10Q9NQV6 1147 aa24.02■■□□□ 1.44
VPS53-218ENST00000575207 PLEKHG2Q9H7P9 1386 aa24.02■■□□□ 1.44
VPS53-218ENST00000575207 SYTL4Q96C24 671 aaPredicted RBP24.01■■□□□ 1.43
VPS53-218ENST00000575207 KDM2BQ8NHM5 1336 aa24■■□□□ 1.43
VPS53-218ENST00000575207 NFAT5O94916 1531 aa23.99■■□□□ 1.43
VPS53-218ENST00000575207 SOX12O15370 315 aa23.98■■□□□ 1.43
VPS53-218ENST00000575207 ARHGAP27Q6ZUM4 889 aa23.98■■□□□ 1.43
VPS53-218ENST00000575207 DDX54Q8TDD1 881 aaKnown RBP23.98■■□□□ 1.43
VPS53-218ENST00000575207 PXDNLA1KZ92 1463 aa23.98■■□□□ 1.43
VPS53-218ENST00000575207 HMGB2P26583 209 aaKnown RBP23.97■■□□□ 1.43
VPS53-218ENST00000575207 SRPK2P78362 688 aaKnown RBP23.97■■□□□ 1.43
VPS53-218ENST00000575207 KCPQ6ZWJ8 1503 aa23.97■■□□□ 1.43
VPS53-218ENST00000575207 RRAGCQ9HB90 399 aa23.97■■□□□ 1.43
VPS53-218ENST00000575207 C9orf131Q5VYM1 1079 aa23.96■■□□□ 1.43
VPS53-218ENST00000575207 CABP1Q9NZU7 370 aa23.96■■□□□ 1.43
VPS53-218ENST00000575207 USP54Q70EL1 1684 aa23.95■■□□□ 1.43
VPS53-218ENST00000575207 BCS1LQ9Y276 419 aa23.95■■□□□ 1.42
VPS53-218ENST00000575207 STAC3Q96MF2 364 aa23.94■■□□□ 1.42
VPS53-218ENST00000575207 QRICH2Q9H0J4 1663 aa23.93■■□□□ 1.42
VPS53-218ENST00000575207 FOXN1O15353 648 aa23.93■■□□□ 1.42
VPS53-218ENST00000575207 MLLT1Q03111 559 aaPredicted RBP23.93■■□□□ 1.42
VPS53-218ENST00000575207 CABP2Q9NPB3 220 aa23.93■■□□□ 1.42
VPS53-218ENST00000575207 KDM2AQ9Y2K7 1162 aa23.93■■□□□ 1.42
VPS53-218ENST00000575207 USP47Q96K76 1375 aa23.92■■□□□ 1.42
VPS53-218ENST00000575207 RGS19P49795 217 aa23.91■■□□□ 1.42
VPS53-218ENST00000575207 TGFB2P61812 414 aa23.91■■□□□ 1.42
VPS53-218ENST00000575207 C5P01031 1676 aa23.91■■□□□ 1.42
VPS53-218ENST00000575207 DOT1LQ8TEK3 1739 aa23.9■■□□□ 1.42
VPS53-218ENST00000575207 TTC21BQ7Z4L5 1316 aa23.9■■□□□ 1.42
VPS53-218ENST00000575207 TNRC6CQ9HCJ0 1690 aaKnown RBP23.9■■□□□ 1.42
VPS53-218ENST00000575207 DCAF11Q8TEB1 546 aa23.9■■□□□ 1.42
VPS53-218ENST00000575207 AMIGO3Q86WK7 504 aa23.89■■□□□ 1.41
VPS53-218ENST00000575207 ABHD8Q96I13 439 aa23.89■■□□□ 1.41
VPS53-218ENST00000575207 KIAA1551Q9HCM1 1747 aa23.89■■□□□ 1.41
VPS53-218ENST00000575207 KIF13BQ9NQT8 1826 aa23.87■■□□□ 1.41
VPS53-218ENST00000575207 ANKRD24Q8TF21 1146 aa23.86■■□□□ 1.41
VPS53-218ENST00000575207 PKD1L3Q7Z443 1732 aa23.86■■□□□ 1.41
VPS53-218ENST00000575207 KIAA1210Q9ULL0 1709 aa23.86■■□□□ 1.41
VPS53-218ENST00000575207 TTC21AQ8NDW8 1320 aa23.85■■□□□ 1.41
VPS53-218ENST00000575207 A0A0G2JLW4 131 aa23.85■■□□□ 1.41
VPS53-218ENST00000575207 TAF1LQ8IZX4 1826 aa23.84■■□□□ 1.41
VPS53-218ENST00000575207 CTCFP49711 727 aaPredicted RBP23.84■■□□□ 1.41
VPS53-218ENST00000575207 PPARGC1BQ86YN6 1023 aaKnown RBP23.84■■□□□ 1.41
VPS53-218ENST00000575207 TOGARAM1Q9Y4F4 1720 aa23.84■■□□□ 1.41
VPS53-218ENST00000575207 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP23.83■■□□□ 1.41
VPS53-218ENST00000575207 FCHSD2O94868 740 aa23.83■■□□□ 1.41
VPS53-218ENST00000575207 SMIM5Q71RC9 77 aa23.83■■□□□ 1.41
VPS53-218ENST00000575207 ZNF692Q9BU19 519 aaPredicted RBP23.83■■□□□ 1.41
VPS53-218ENST00000575207 AK7Q96M32 723 aa23.82■■□□□ 1.4
VPS53-218ENST00000575207 N4BP2Q86UW6 1770 aaPredicted RBP23.82■■□□□ 1.4
VPS53-218ENST00000575207 NSD3Q9BZ95 1437 aa23.82■■□□□ 1.4
VPS53-218ENST00000575207 C4BP0C0L5 1744 aa23.8■■□□□ 1.4
VPS53-218ENST00000575207 SSFA2P28290 1259 aa23.8■■□□□ 1.4
VPS53-218ENST00000575207 RNF181Q9P0P0 153 aa23.8■■□□□ 1.4
VPS53-218ENST00000575207 UBR3Q6ZT12 1888 aa23.79■■□□□ 1.4
VPS53-218ENST00000575207 PHF14O94880 888 aa23.79■■□□□ 1.4
VPS53-218ENST00000575207 VEGFAP15692 232 aaPredicted RBP23.79■■□□□ 1.4
VPS53-218ENST00000575207 MMP10P09238 476 aa23.78■■□□□ 1.4
VPS53-218ENST00000575207 CREBZFQ9NS37 354 aa23.78■■□□□ 1.4
VPS53-218ENST00000575207 MKRN1Q9UHC7 482 aaKnown RBP23.78■■□□□ 1.4
VPS53-218ENST00000575207 DPEP1P16444 411 aa23.77■■□□□ 1.4
VPS53-218ENST00000575207 BRCA1P38398 1863 aaKnown RBP23.77■■□□□ 1.4
VPS53-218ENST00000575207 PALLDQ8WX93 1383 aa23.77■■□□□ 1.4
VPS53-218ENST00000575207 ARFGEF1Q9Y6D6 1849 aa23.75■■□□□ 1.39
VPS53-218ENST00000575207 ZCRB1Q8TBF4 217 aaKnown RBP23.75■■□□□ 1.39
VPS53-218ENST00000575207 AIDAQ96BJ3 306 aa23.75■■□□□ 1.39
VPS53-218ENST00000575207 ZC3H4Q9UPT8 1303 aaKnown RBP23.75■■□□□ 1.39
VPS53-218ENST00000575207 LBX1P52954 281 aa23.74■■□□□ 1.39
VPS53-218ENST00000575207 DCAF5Q96JK2 942 aa23.74■■□□□ 1.39
VPS53-218ENST00000575207 CENPJQ9HC77 1338 aaPredicted RBP23.74■■□□□ 1.39
VPS53-218ENST00000575207 USP31Q70CQ4 1352 aa23.74■■□□□ 1.39
VPS53-218ENST00000575207 KCNA3P22001 575 aa23.73■■□□□ 1.39
VPS53-218ENST00000575207 PDE4DIPQ5VU43 2346 aa23.72■■□□□ 1.39
VPS53-218ENST00000575207 TNRC18O15417 2968 aaPredicted RBP23.71■■□□□ 1.39
VPS53-218ENST00000575207 LTN1O94822 1766 aa23.7■■□□□ 1.39
VPS53-218ENST00000575207 CNTNAP1P78357 1384 aa23.7■■□□□ 1.38
VPS53-218ENST00000575207 WBP1LQ9NX94 342 aa23.7■■□□□ 1.38
VPS53-218ENST00000575207 SBF1O95248 1867 aa23.69■■□□□ 1.38
VPS53-218ENST00000575207 GLTPD2A6NH11 291 aa23.69■■□□□ 1.38
VPS53-218ENST00000575207 CCDC85CA6NKD9 419 aa23.69■■□□□ 1.38
VPS53-218ENST00000575207 PIM2Q9P1W9 311 aa23.67■■□□□ 1.38
VPS53-218ENST00000575207 CCDC87Q9NVE4 849 aa23.66■■□□□ 1.38
VPS53-218ENST00000575207 FAM208AQ9UK61 1670 aaKnown RBP23.66■■□□□ 1.38
VPS53-218ENST00000575207 SMARCC1Q92922 1105 aaPredicted RBP23.65■■□□□ 1.38
VPS53-218ENST00000575207 HSPA8P11142 646 aaKnown RBP23.64■■□□□ 1.37
VPS53-218ENST00000575207 DALRD3Q5D0E6 543 aaKnown RBP23.64■■□□□ 1.37
VPS53-218ENST00000575207 NLGN1Q8N2Q7 840 aa23.64■■□□□ 1.37
VPS53-218ENST00000575207 IP6K1Q92551 441 aa23.64■■□□□ 1.37
VPS53-218ENST00000575207 KDM6AO15550 1401 aaPredicted RBP23.64■■□□□ 1.37
VPS53-218ENST00000575207 MEGF6O75095 1541 aa23.64■■□□□ 1.37
VPS53-218ENST00000575207 KTN1Q86UP2 1357 aaKnown RBP23.63■■□□□ 1.37
VPS53-218ENST00000575207 POTECB2RU33 542 aa23.62■■□□□ 1.37
VPS53-218ENST00000575207 NBPF1Q3BBV0 1214 aa23.62■■□□□ 1.37
VPS53-218ENST00000575207 MPRIPQ6WCQ1 1025 aa23.61■■□□□ 1.37
VPS53-218ENST00000575207 LINC00116Q8NCU8 138 aa23.61■■□□□ 1.37
VPS53-218ENST00000575207 VEGFBP49765 207 aa23.6■■□□□ 1.37
VPS53-218ENST00000575207 LTV1Q96GA3 475 aaPredicted RBP23.6■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 93 ms