RNA–Protein interactions for RNA: ENST00000575194.5

SPNS3-204, Transcript of sphingolipid transporter 3 (putative), humanhuman

TSL 1 (best)

Gene SPNS3, Length 1,721 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPNS3-204ENST00000575194 ARHGEF25Q86VW2 580 aa23.91■■□□□ 1.42
SPNS3-204ENST00000575194 CFAP44Q96MT7 982 aa23.91■■□□□ 1.42
SPNS3-204ENST00000575194 LTN1O94822 1766 aa23.91■■□□□ 1.42
SPNS3-204ENST00000575194 BRPF1P55201 1214 aaPredicted RBP23.9■■□□□ 1.42
SPNS3-204ENST00000575194 AEBP1Q8IUX7 1158 aa23.9■■□□□ 1.42
SPNS3-204ENST00000575194 KDRP35968 1356 aa23.9■■□□□ 1.42
SPNS3-204ENST00000575194 ATF7IPQ6VMQ6 1270 aa23.9■■□□□ 1.42
SPNS3-204ENST00000575194 IGSF1Q8N6C5 1336 aa23.88■■□□□ 1.41
SPNS3-204ENST00000575194 PDE4AP27815 886 aa23.87■■□□□ 1.41
SPNS3-204ENST00000575194 ZC3H6P61129 1189 aaKnown RBP23.87■■□□□ 1.41
SPNS3-204ENST00000575194 THUMPD2Q9BTF0 503 aaKnown RBP23.87■■□□□ 1.41
SPNS3-204ENST00000575194 MBIPQ9NS73 344 aa23.87■■□□□ 1.41
SPNS3-204ENST00000575194 TRIM27P14373 513 aa23.87■■□□□ 1.41
SPNS3-204ENST00000575194 DDX19BQ9UMR2 479 aa23.87■■□□□ 1.41
SPNS3-204ENST00000575194 CPDO75976 1380 aa23.86■■□□□ 1.41
SPNS3-204ENST00000575194 ANP32AP39687 249 aaKnown RBP23.86■■□□□ 1.41
SPNS3-204ENST00000575194 HAP1P54257 671 aaPredicted RBP23.86■■□□□ 1.41
SPNS3-204ENST00000575194 BACH2Q9BYV9 841 aa23.86■■□□□ 1.41
SPNS3-204ENST00000575194 TNNQ9UQP3 1299 aa23.86■■□□□ 1.41
SPNS3-204ENST00000575194 JCADQ9P266 1359 aa23.86■■□□□ 1.41
SPNS3-204ENST00000575194 NOB1Q9ULX3 412 aaKnown RBP23.85■■□□□ 1.41
SPNS3-204ENST00000575194 HOXC9P31274 260 aa23.84■■□□□ 1.41
SPNS3-204ENST00000575194 IP6K1Q92551 441 aa23.84■■□□□ 1.41
SPNS3-204ENST00000575194 KIAA0232Q92628 1395 aa23.84■■□□□ 1.41
SPNS3-204ENST00000575194 RWDD1Q9H446 243 aaPredicted RBP23.83■■□□□ 1.41
SPNS3-204ENST00000575194 COL18A1P39060 1754 aa23.83■■□□□ 1.41
SPNS3-204ENST00000575194 VAMP4O75379 141 aa23.82■■□□□ 1.4
SPNS3-204ENST00000575194 IGHDP01880 384 aa23.82■■□□□ 1.4
SPNS3-204ENST00000575194 GAS2L2Q8NHY3 880 aa23.81■■□□□ 1.4
SPNS3-204ENST00000575194 ARHGAP45Q92619 1136 aa23.81■■□□□ 1.4
SPNS3-204ENST00000575194 FAM83GA6ND36 823 aa23.81■■□□□ 1.4
SPNS3-204ENST00000575194 TWISTNBQ3B726 338 aaPredicted RBP23.81■■□□□ 1.4
SPNS3-204ENST00000575194 CHMP4BQ9H444 224 aaKnown RBP23.81■■□□□ 1.4
SPNS3-204ENST00000575194 AXIN2Q9Y2T1 843 aa23.81■■□□□ 1.4
SPNS3-204ENST00000575194 ITPRIPQ8IWB1 547 aa23.8■■□□□ 1.4
SPNS3-204ENST00000575194 FBXO41Q8TF61 875 aa23.8■■□□□ 1.4
SPNS3-204ENST00000575194 EYA1Q99502 592 aa23.8■■□□□ 1.4
SPNS3-204ENST00000575194 ABCC6O95255 1503 aa23.79■■□□□ 1.4
SPNS3-204ENST00000575194 ZBTB7CA1YPR0 619 aa23.79■■□□□ 1.4
SPNS3-204ENST00000575194 MRPL50Q8N5N7 158 aaKnown RBP23.79■■□□□ 1.4
SPNS3-204ENST00000575194 LRRC37A3O60309 1634 aa23.78■■□□□ 1.4
SPNS3-204ENST00000575194 RGPD5Q99666 1765 aa23.78■■□□□ 1.4
SPNS3-204ENST00000575194 CHRNA2Q15822 529 aa23.78■■□□□ 1.4
SPNS3-204ENST00000575194 RTF1Q92541 710 aaKnown RBP23.78■■□□□ 1.4
SPNS3-204ENST00000575194 PCDHB15Q9Y5E8 787 aa23.78■■□□□ 1.4
SPNS3-204ENST00000575194 HTATSF1O43719 755 aaKnown RBP23.77■■□□□ 1.4
SPNS3-204ENST00000575194 DCTN1Q14203 1278 aa23.77■■□□□ 1.4
SPNS3-204ENST00000575194 PRDM11Q9NQV5 511 aa23.77■■□□□ 1.4
SPNS3-204ENST00000575194 CHL1O00533 1208 aa23.76■■□□□ 1.39
SPNS3-204ENST00000575194 SPATA31A6Q5VVP1 1343 aa23.76■■□□□ 1.39
SPNS3-204ENST00000575194 CRB1P82279 1406 aa23.76■■□□□ 1.39
SPNS3-204ENST00000575194 VIRMAQ69YN4 1812 aaKnown RBP23.76■■□□□ 1.39
SPNS3-204ENST00000575194 FAM161AQ3B820 660 aa23.76■■□□□ 1.39
SPNS3-204ENST00000575194 SKAP1Q86WV1 359 aa23.76■■□□□ 1.39
SPNS3-204ENST00000575194 TMEM57Q8N5G2 664 aa23.76■■□□□ 1.39
SPNS3-204ENST00000575194 TSPYL6Q8N831 410 aa23.76■■□□□ 1.39
SPNS3-204ENST00000575194 LMO7Q8WWI1 1683 aa23.75■■□□□ 1.39
SPNS3-204ENST00000575194 NUTM2BA6NNL0 878 aaPredicted RBP23.74■■□□□ 1.39
SPNS3-204ENST00000575194 NUTM2EB1AL46 878 aaPredicted RBP23.74■■□□□ 1.39
SPNS3-204ENST00000575194 RGS3P49796 1198 aa23.74■■□□□ 1.39
SPNS3-204ENST00000575194 MTHFSDQ2M296 383 aaKnown RBP23.74■■□□□ 1.39
SPNS3-204ENST00000575194 NUTM2AQ8IVF1 878 aaPredicted RBP23.74■■□□□ 1.39
SPNS3-204ENST00000575194 C8orf58Q8NAV2 365 aa23.74■■□□□ 1.39
SPNS3-204ENST00000575194 MCM10Q7L590 875 aa23.73■■□□□ 1.39
SPNS3-204ENST00000575194 ERICH6Q7L0X2 663 aa23.73■■□□□ 1.39
SPNS3-204ENST00000575194 API5Q9BZZ5 524 aaKnown RBP23.73■■□□□ 1.39
SPNS3-204ENST00000575194 CAMTA1Q9Y6Y1 1673 aa23.73■■□□□ 1.39
SPNS3-204ENST00000575194 MSH5O43196 834 aa23.72■■□□□ 1.39
SPNS3-204ENST00000575194 HDAC1Q13547 482 aaPredicted RBP23.72■■□□□ 1.39
SPNS3-204ENST00000575194 ADAMTS2O95450 1211 aa23.71■■□□□ 1.39
SPNS3-204ENST00000575194 COL14A1Q05707 1796 aaKnown RBP23.71■■□□□ 1.39
SPNS3-204ENST00000575194 ANKRD24Q8TF21 1146 aa23.7■■□□□ 1.39
SPNS3-204ENST00000575194 LTV1Q96GA3 475 aaPredicted RBP23.7■■□□□ 1.39
SPNS3-204ENST00000575194 ABCC4O15439 1325 aa23.7■■□□□ 1.38
SPNS3-204ENST00000575194 ERBB3P21860 1342 aa23.7■■□□□ 1.38
SPNS3-204ENST00000575194 IPO9Q96P70 1041 aaKnown RBP23.7■■□□□ 1.38
SPNS3-204ENST00000575194 ZBTB40Q9NUA8 1239 aa23.7■■□□□ 1.38
SPNS3-204ENST00000575194 LRP6O75581 1613 aa23.69■■□□□ 1.38
SPNS3-204ENST00000575194 ELL2O00472 640 aaPredicted RBP23.69■■□□□ 1.38
SPNS3-204ENST00000575194 MAP3K5Q99683 1374 aa23.69■■□□□ 1.38
SPNS3-204ENST00000575194 GNAT3A8MTJ3 354 aa23.67■■□□□ 1.38
SPNS3-204ENST00000575194 RGPD2P0DJD1 1756 aa23.66■■□□□ 1.38
SPNS3-204ENST00000575194 NBPF6Q5VWK0 638 aa23.66■■□□□ 1.38
SPNS3-204ENST00000575194 NBPF4Q96M43 638 aa23.66■■□□□ 1.38
SPNS3-204ENST00000575194 BTG4Q9NY30 223 aa23.66■■□□□ 1.38
SPNS3-204ENST00000575194 COL5A2P05997 1499 aaPredicted RBP23.66■■□□□ 1.38
SPNS3-204ENST00000575194 C8orf34Q49A92 452 aa23.65■■□□□ 1.38
SPNS3-204ENST00000575194 ANP32EQ9BTT0 268 aa23.65■■□□□ 1.38
SPNS3-204ENST00000575194 BABAM1Q9NWV8 329 aa23.65■■□□□ 1.38
SPNS3-204ENST00000575194 TSPYL4Q9UJ04 414 aa23.65■■□□□ 1.38
SPNS3-204ENST00000575194 PDZRN3Q9UPQ7 1066 aa23.64■■□□□ 1.38
SPNS3-204ENST00000575194 PLCH1Q4KWH8 1693 aa23.64■■□□□ 1.37
SPNS3-204ENST00000575194 SOS1Q07889 1333 aaPredicted RBP23.63■■□□□ 1.37
SPNS3-204ENST00000575194 NPM2Q86SE8 214 aaKnown RBP23.63■■□□□ 1.37
SPNS3-204ENST00000575194 NOP58Q9Y2X3 529 aaKnown RBP23.63■■□□□ 1.37
SPNS3-204ENST00000575194 PTPRCP08575 1304 aa23.63■■□□□ 1.37
SPNS3-204ENST00000575194 WDR17Q8IZU2 1322 aa23.63■■□□□ 1.37
SPNS3-204ENST00000575194 FAM208AQ9UK61 1670 aaKnown RBP23.62■■□□□ 1.37
SPNS3-204ENST00000575194 NCAPD2Q15021 1401 aa23.62■■□□□ 1.37
SPNS3-204ENST00000575194 SLIT2O94813 1529 aa23.62■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms