RNA–Protein interactions for RNA: ENST00000574701.5

LITAF-213, Transcript of lipopolysaccharide induced TNF factor, human

TSL 4

Gene LITAF, Length 553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LITAF-213	ENST00000574701	PKD1L3	Q7Z443	1732 aa		32.7	■■■□□ 2.83
LITAF-213	ENST00000574701	BCL9	O00512	1426 aa		32.69	■■■□□ 2.82
LITAF-213	ENST00000574701	EP400	Q96L91	3159 aa		32.69	■■■□□ 2.82
LITAF-213	ENST00000574701	RALBP1	Q15311	655 aa		32.69	■■■□□ 2.82
LITAF-213	ENST00000574701	TNS1	Q9HBL0	1735 aa	Known RBP	32.68	■■■□□ 2.82
LITAF-213	ENST00000574701	DDX54	Q8TDD1	881 aa	Known RBP	32.68	■■■□□ 2.82
LITAF-213	ENST00000574701	SBF2	Q86WG5	1849 aa		32.67	■■■□□ 2.82
LITAF-213	ENST00000574701	TRIM37	O94972	964 aa		32.67	■■■□□ 2.82
LITAF-213	ENST00000574701	PLEKHG2	Q9H7P9	1386 aa		32.67	■■■□□ 2.82
LITAF-213	ENST00000574701	PCDH11X	Q9BZA7	1347 aa		32.66	■■■□□ 2.82
LITAF-213	ENST00000574701	PCDH11Y	Q9BZA8	1340 aa		32.66	■■■□□ 2.82
LITAF-213	ENST00000574701	SULT6B1	Q6IMI4	303 aa		32.63	■■■□□ 2.81
LITAF-213	ENST00000574701	SPG7	Q9UQ90	795 aa		32.63	■■■□□ 2.81
LITAF-213	ENST00000574701	BAG6	P46379	1132 aa		32.62	■■■□□ 2.81
LITAF-213	ENST00000574701	KDR	P35968	1356 aa		32.61	■■■□□ 2.81
LITAF-213	ENST00000574701	NHS	Q6T4R5	1651 aa		32.61	■■■□□ 2.81
LITAF-213	ENST00000574701	AEBP1	Q8IUX7	1158 aa		32.6	■■■□□ 2.81
LITAF-213	ENST00000574701	U2SURP	O15042	1029 aa	Known RBP	32.59	■■■□□ 2.81
LITAF-213	ENST00000574701	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	32.59	■■■□□ 2.81
LITAF-213	ENST00000574701	NUDC	Q9Y266	331 aa		32.59	■■■□□ 2.81
LITAF-213	ENST00000574701	DOT1L	Q8TEK3	1739 aa		32.57	■■■□□ 2.81
LITAF-213	ENST00000574701	MYBBP1A	Q9BQG0	1328 aa	Known RBP	32.56	■■■□□ 2.8
LITAF-213	ENST00000574701	HMOX1	P09601	288 aa		32.56	■■■□□ 2.8
LITAF-213	ENST00000574701	APBA3	O96018	575 aa		32.55	■■■□□ 2.8
LITAF-213	ENST00000574701	PLEKHO1	Q53GL0	409 aa	Predicted RBP	32.55	■■■□□ 2.8
LITAF-213	ENST00000574701	ACSBG1	Q96GR2	724 aa		32.55	■■■□□ 2.8
LITAF-213	ENST00000574701	BCL11B	Q9C0K0	894 aa	Predicted RBP	32.55	■■■□□ 2.8
LITAF-213	ENST00000574701	KAT6B	Q8WYB5	2073 aa		32.55	■■■□□ 2.8
LITAF-213	ENST00000574701	AMOT	Q4VCS5	1084 aa		32.54	■■■□□ 2.8
LITAF-213	ENST00000574701	DEFB132	Q7Z7B7	95 aa		32.54	■■■□□ 2.8
LITAF-213	ENST00000574701	CYP27B1	O15528	508 aa		32.52	■■■□□ 2.8
LITAF-213	ENST00000574701	PRKRIP1	Q9H875	184 aa	Predicted RBP	32.52	■■■□□ 2.8
LITAF-213	ENST00000574701	IFNL2	Q8IZJ0	200 aa		32.5	■■■□□ 2.79
LITAF-213	ENST00000574701	RGPD3	A6NKT7	1758 aa	Predicted RBP	32.48	■■■□□ 2.79
LITAF-213	ENST00000574701	RGPD4	Q7Z3J3	1758 aa		32.48	■■■□□ 2.79
LITAF-213	ENST00000574701	EN1	Q05925	392 aa	Predicted RBP	32.48	■■■□□ 2.79
LITAF-213	ENST00000574701	BTAF1	O14981	1849 aa		32.47	■■■□□ 2.79
LITAF-213	ENST00000574701	KCNQ2	O43526	872 aa		32.47	■■■□□ 2.79
LITAF-213	ENST00000574701	PHKG2	P15735	406 aa		32.47	■■■□□ 2.79
LITAF-213	ENST00000574701	ZNF530	Q6P9A1	599 aa	Predicted RBP	32.47	■■■□□ 2.79
LITAF-213	ENST00000574701	SYTL4	Q96C24	671 aa	Predicted RBP	32.47	■■■□□ 2.79
LITAF-213	ENST00000574701	U2AF1L5	P0DN76	240 aa	Predicted RBP	32.46	■■■□□ 2.79
LITAF-213	ENST00000574701	U2AF1	Q01081	240 aa	Known RBP eCLIP	32.46	■■■□□ 2.79
LITAF-213	ENST00000574701	PTF1A	Q7RTS3	328 aa		32.45	■■■□□ 2.79
LITAF-213	ENST00000574701	TOGARAM1	Q9Y4F4	1720 aa		32.44	■■■□□ 2.78
LITAF-213	ENST00000574701	C1orf141	Q5JVX7	400 aa		32.44	■■■□□ 2.78
LITAF-213	ENST00000574701	HSP90AB1	P08238	724 aa	Known RBP	32.43	■■■□□ 2.78
LITAF-213	ENST00000574701	NKX1-1	Q15270	411 aa	Predicted RBP	32.43	■■■□□ 2.78
LITAF-213	ENST00000574701	PRIM1	P49642	420 aa	Known RBP	32.42	■■■□□ 2.78
LITAF-213	ENST00000574701	RREB1	Q92766	1687 aa		32.41	■■■□□ 2.78
LITAF-213	ENST00000574701	EZH2	Q15910	746 aa	Known RBP	32.41	■■■□□ 2.78
LITAF-213	ENST00000574701	CAMKK2	Q96RR4	588 aa		32.4	■■■□□ 2.78
LITAF-213	ENST00000574701	PLSCR1	O15162	318 aa		32.39	■■■□□ 2.78
LITAF-213	ENST00000574701	ANP32C	O43423	234 aa		32.39	■■■□□ 2.78
LITAF-213	ENST00000574701	RSPH6A	Q9H0K4	717 aa		32.39	■■■□□ 2.78
LITAF-213	ENST00000574701	ITGB4	P16144	1822 aa		32.39	■■■□□ 2.78
LITAF-213	ENST00000574701	PRKAR2B	P31323	418 aa		32.38	■■■□□ 2.77
LITAF-213	ENST00000574701	FCHSD2	O94868	740 aa		32.36	■■■□□ 2.77
LITAF-213	ENST00000574701	DCAF5	Q96JK2	942 aa		32.36	■■■□□ 2.77
LITAF-213	ENST00000574701	AKAP4	Q5JQC9	854 aa		32.35	■■■□□ 2.77
LITAF-213	ENST00000574701	NUP188	Q5SRE5	1749 aa		32.34	■■■□□ 2.77
LITAF-213	ENST00000574701	MTHFSD	Q2M296	383 aa	Known RBP	32.34	■■■□□ 2.77
LITAF-213	ENST00000574701	GAS2L2	Q8NHY3	880 aa		32.34	■■■□□ 2.77
LITAF-213	ENST00000574701	NEFM	P07197	916 aa		32.33	■■■□□ 2.77
LITAF-213	ENST00000574701	MPRIP	Q6WCQ1	1025 aa		32.33	■■■□□ 2.77
LITAF-213	ENST00000574701	TMOD3	Q9NYL9	352 aa		32.32	■■■□□ 2.76
LITAF-213	ENST00000574701	KDM6A	O15550	1401 aa	Predicted RBP	32.32	■■■□□ 2.76
LITAF-213	ENST00000574701	SCN11A	Q9UI33	1791 aa		32.31	■■■□□ 2.76
LITAF-213	ENST00000574701	PNN	Q9H307	717 aa	Known RBP	32.3	■■■□□ 2.76
LITAF-213	ENST00000574701	VIRMA	Q69YN4	1812 aa	Known RBP	32.29	■■■□□ 2.76
LITAF-213	ENST00000574701	ERVV-2	B6SEH9	535 aa		32.28	■■■□□ 2.76
LITAF-213	ENST00000574701	WDR43	Q15061	677 aa	Known RBP eCLIP	32.28	■■■□□ 2.76
LITAF-213	ENST00000574701	TXNRD1	Q16881	649 aa		32.27	■■■□□ 2.76
LITAF-213	ENST00000574701	MAP3K5	Q99683	1374 aa		32.27	■■■□□ 2.76
LITAF-213	ENST00000574701	LY75	O60449	1722 aa		32.26	■■■□□ 2.76
LITAF-213	ENST00000574701	CABP4	P57796	275 aa		32.25	■■■□□ 2.75
LITAF-213	ENST00000574701	PHACTR3	Q96KR7	559 aa		32.25	■■■□□ 2.75
LITAF-213	ENST00000574701	PIGB	Q92521	554 aa		32.24	■■■□□ 2.75
LITAF-213	ENST00000574701	MAPK8IP3	Q9UPT6	1336 aa		32.24	■■■□□ 2.75
LITAF-213	ENST00000574701	NBPF14	Q5TI25	921 aa		32.23	■■■□□ 2.75
LITAF-213	ENST00000574701	SMARCC1	Q92922	1105 aa	Predicted RBP	32.23	■■■□□ 2.75
LITAF-213	ENST00000574701	PALLD	Q8WX93	1383 aa		32.22	■■■□□ 2.75
LITAF-213	ENST00000574701	ADAMTS7	Q9UKP4	1686 aa		32.22	■■■□□ 2.75
LITAF-213	ENST00000574701	GNAT3	A8MTJ3	354 aa		32.22	■■■□□ 2.75
LITAF-213	ENST00000574701	RNMT	O43148	476 aa	Known RBP	32.21	■■■□□ 2.75
LITAF-213	ENST00000574701	SLC27A3	Q5K4L6	730 aa		32.2	■■■□□ 2.75
LITAF-213	ENST00000574701	PROM2	Q8N271	834 aa		32.2	■■■□□ 2.75
LITAF-213	ENST00000574701	MRC1	P22897	1456 aa		32.2	■■■□□ 2.75
LITAF-213	ENST00000574701	PLEKHF1	Q96S99	279 aa		32.18	■■■□□ 2.74
LITAF-213	ENST00000574701	SLC52A2	Q9HAB3	445 aa		32.16	■■■□□ 2.74
LITAF-213	ENST00000574701	LGR6	Q9HBX8	967 aa		32.16	■■■□□ 2.74
LITAF-213	ENST00000574701	CCNL1	Q9UK58	526 aa	Predicted RBP	32.16	■■■□□ 2.74
LITAF-213	ENST00000574701	RTF1	Q92541	710 aa	Known RBP	32.15	■■■□□ 2.74
LITAF-213	ENST00000574701	PAPPA	Q13219	1627 aa		32.15	■■■□□ 2.74
LITAF-213	ENST00000574701	NFATC2IP	Q8NCF5	419 aa		32.14	■■■□□ 2.74
LITAF-213	ENST00000574701	MRS2	Q9HD23	443 aa		32.13	■■■□□ 2.73
LITAF-213	ENST00000574701	ASAP1	Q9ULH1	1129 aa		32.13	■■■□□ 2.73
LITAF-213	ENST00000574701	DLG5	Q8TDM6	1919 aa		32.12	■■■□□ 2.73
LITAF-213	ENST00000574701	HMGB2	P26583	209 aa	Known RBP	32.12	■■■□□ 2.73
LITAF-213	ENST00000574701	STK32B	Q9NY57	414 aa		32.12	■■■□□ 2.73

Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms